BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0256.p         (164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001632271.1| hypothetical protein Bpet3660 [Bordetella pe...   193   8e-48
ref|YP_004353609.1| hypothetical protein PSEBR_a2326 [Pseudomona...   189   2e-46
ref|YP_454821.1| hypothetical protein SG1141 [Sodalis glossinidi...   171   4e-41
ref|YP_004349475.1| hypothetical protein bgla_2g15170 [Burkholde...   157   5e-37
ref|YP_760891.1| DoxX family protein [Hyphomonas neptunium ATCC ...   146   1e-33

>ref|YP_001632271.1| hypothetical protein Bpet3660 [Bordetella petrii DSM 12804]
 emb|CAP44003.1| conserved hypothetical protein [Bordetella petrii]
          Length = 169

 Score =  193 bits (490), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 99/155 (63%), Positives = 116/155 (74%)

Query: 10  APGAGRFIFPALMRWYARGEGLTYALLRFGYGAIIFTHGLPKALGVSHGSMADPMAGSIR 69
           A G+ R + PAL   YAR E + Y LLR  +G I+ THGLPKALG SHGSMADPM GSI 
Sbjct: 15  ATGSERLLVPALGPLYARAEPVLYGLLRLMFGIIMVTHGLPKALGTSHGSMADPMGGSIN 74

Query: 70  LIGEVMGLPFAPQLAFLVMLLETVGAAMLALGLLTRPLALLMFVEMIAISYAMGPTWPWI 129
           LI  VMGLPFAPQLAFLVMLLET+G  MLA+G  TRP+AL + V+M  I Y +GPTWPWI
Sbjct: 75  LIQNVMGLPFAPQLAFLVMLLETLGGIMLAVGFWTRPVALAIAVQMAGICYVLGPTWPWI 134

Query: 130 DRGIEYPVLLGLAALYMMLRGGGAWSLDSRIRYEI 164
           DRGIE+PVL+   ALYM  RGGGAW++D R+   +
Sbjct: 135 DRGIEFPVLMLCLALYMAARGGGAWAVDRRLGISV 169


>ref|YP_004353609.1| hypothetical protein PSEBR_a2326 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gb|AEA68605.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 169

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 111/136 (81%)

Query: 26  ARGEGLTYALLRFGYGAIIFTHGLPKALGVSHGSMADPMAGSIRLIGEVMGLPFAPQLAF 85
           AR E   YA LR  +  ++FTHGLPK L  +HGSMADPM+ SI LI  VMGLPFA QLAF
Sbjct: 34  ARFEPHLYAALRIVFAVVLFTHGLPKVLRTAHGSMADPMSASINLIQNVMGLPFAAQLAF 93

Query: 86  LVMLLETVGAAMLALGLLTRPLALLMFVEMIAISYAMGPTWPWIDRGIEYPVLLGLAALY 145
           LVMLLETVGA MLA+GL TR +ALL+ +EM+AISYA+GPTWPWIDRGIE+PVL+G  ALY
Sbjct: 94  LVMLLETVGALMLAMGLGTRLVALLIAIEMVAISYALGPTWPWIDRGIEFPVLMGFLALY 153

Query: 146 MMLRGGGAWSLDSRIR 161
           ++ RGGGA+SLDSR R
Sbjct: 154 IVARGGGAYSLDSRQR 169


>ref|YP_454821.1| hypothetical protein SG1141 [Sodalis glossinidius str. 'morsitans']
 dbj|BAE74416.1| hypothetical protein [Sodalis glossinidius str. 'morsitans']
          Length = 173

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 108/145 (74%), Gaps = 3/145 (2%)

Query: 19  PALMRWYAR---GEGLTYALLRFGYGAIIFTHGLPKALGVSHGSMADPMAGSIRLIGEVM 75
           P L R+ AR   GE   YALLR  +  ++ TH LPKALG S GSM++PMA SI L+   M
Sbjct: 27  PQLSRFSARLREGESALYALLRIVFALLLLTHDLPKALGTSQGSMSNPMARSIELMQNAM 86

Query: 76  GLPFAPQLAFLVMLLETVGAAMLALGLLTRPLALLMFVEMIAISYAMGPTWPWIDRGIEY 135
           GLPFAP LAF++MLLET GA +LA+G  TR +ALL   ++  ISYA+GPTWPW +RGIE+
Sbjct: 87  GLPFAPLLAFMIMLLETGGAVLLAIGFCTRLVALLFVAQIAGISYALGPTWPWFERGIEF 146

Query: 136 PVLLGLAALYMMLRGGGAWSLDSRI 160
           PVL+G  ALYM+ RGGGAW+LD+R+
Sbjct: 147 PVLMGFLALYMVARGGGAWALDARL 171


>ref|YP_004349475.1| hypothetical protein bgla_2g15170 [Burkholderia gladioli BSR3]
 gb|AEA63963.1| hypothetical protein bgla_2g15170 [Burkholderia gladioli BSR3]
          Length = 150

 Score =  157 bits (397), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 97/125 (77%)

Query: 34  ALLRFGYGAIIFTHGLPKALGVSHGSMADPMAGSIRLIGEVMGLPFAPQLAFLVMLLETV 93
           A+LR   GAI+ THGLPK L  +HG+MADPMA SIRLI +  GLPFA QLA LVML+ET 
Sbjct: 16  AVLRISLGAILLTHGLPKLLHTAHGAMADPMANSIRLIRDGAGLPFAEQLAVLVMLIETA 75

Query: 94  GAAMLALGLLTRPLALLMFVEMIAISYAMGPTWPWIDRGIEYPVLLGLAALYMMLRGGGA 153
           GA +L LGL TR +A  +  EMI I++ +GPTWPW++RGIEYPVL+G  AL ++L GGGA
Sbjct: 76  GAVLLMLGLGTRAVACAICAEMIGIAWVLGPTWPWLERGIEYPVLMGAVALSIVLSGGGA 135

Query: 154 WSLDS 158
           WSLD+
Sbjct: 136 WSLDA 140


>ref|YP_760891.1| DoxX family protein [Hyphomonas neptunium ATCC 15444]
 gb|ABI76224.1| DoxX family protein [Hyphomonas neptunium ATCC 15444]
          Length = 148

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 100/142 (70%)

Query: 19  PALMRWYARGEGLTYALLRFGYGAIIFTHGLPKALGVSHGSMADPMAGSIRLIGEVMGLP 78
           P+L   Y R   ++YALLR  +G  I THG+PK L   HGSMADPMAG+  LI   + LP
Sbjct: 3   PSLGPLYDRATPISYALLRIAFGLTILTHGIPKILNRPHGSMADPMAGTTHLIETALHLP 62

Query: 79  FAPQLAFLVMLLETVGAAMLALGLLTRPLALLMFVEMIAISYAMGPTWPWIDRGIEYPVL 138
           FAPQLAF V LLET GAA +ALG  TR LA ++ V+M  I  A+GPT+PWIDRGIEYPV+
Sbjct: 63  FAPQLAFFVALLETFGAAAVALGAATRLLAPMLAVQMAFICVAIGPTYPWIDRGIEYPVI 122

Query: 139 LGLAALYMMLRGGGAWSLDSRI 160
           LG  AL +  +GGG WS+DS I
Sbjct: 123 LGFIALLISFQGGGRWSVDSWI 144