BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0249.p (434 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776299.1| FAD-dependent pyridine nucleotide-disulfide ... 548 e-154 ref|YP_004750830.1| putative flavoprotein FAD oxidoreductase [Co... 543 e-152 ref|YP_004228587.1| FAD-dependent pyridine nucleotide-disulfide ... 535 e-150 ref|YP_003750198.1| nirb nh2 domain (NADH binding fad binding) [... 534 e-149 emb|CCA86831.1| nirB NH2 domain (NADH binding FAD binding) [Rals... 533 e-149 >ref|YP_003776299.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ64391.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 413 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 269/312 (86%), Positives = 287/312 (91%), Gaps = 1/312 (0%) Query: 10 SAKKPSLVVIGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSPVLAGDKSID 69 S +PSLVV+GNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRI+LSPVLAGDKSID Sbjct: 8 STARPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSID 67 Query: 70 DIMLNTRDWYVQNNITLHAGDPVEKIDRRRRTVRSQAGVEIKYDRLLLATGSKPFIIPVP 129 DIMLN R WY N ITLHAGDPV IDRR+RTV +++G+ ++YDRLLLATGS PFIIPVP Sbjct: 68 DIMLNPRAWYDDNGITLHAGDPVVHIDRRQRTVHAKSGLTVQYDRLLLATGSTPFIIPVP 127 Query: 130 GHELPGVIAFRDIQDVHIMLDVARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVHVTDS 189 GH+LPGVIAFRDIQDV ML AR HRHAVVIGGGLLGLEAANGL+RQGMDVTVVHVTD+ Sbjct: 128 GHQLPGVIAFRDIQDVDAMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHVTDA 187 Query: 190 LMNQQLDKPAAALLKKALEMKGLRFLLNAQTEAIVGPDRVTAVRFKDGSEIPADLVVMTA 249 LMNQQLDKPAAALLKKALE KGLRFLLNA TE IVGPDRVTAVRFKDGS IPADLVVMTA Sbjct: 188 LMNQQLDKPAAALLKKALEDKGLRFLLNAHTEEIVGPDRVTAVRFKDGSSIPADLVVMTA 247 Query: 250 GVRPNIGLAKEAGLHCDRAIVVDDTLQTYDPRIYAVGECVQHRQATFGLVAPIWDQARVC 309 GVRPNI LAK AGLHC+RAI+VDDTLQTYDPR+YAVGECVQHR+ATFGLVAPIWDQARVC Sbjct: 248 GVRPNIALAKAAGLHCERAIIVDDTLQTYDPRVYAVGECVQHRKATFGLVAPIWDQARVC 307 Query: 310 GAHLAGGSGWRR 321 GAHLA G+G RR Sbjct: 308 GAHLA-GAGHRR 318 >ref|YP_004750830.1| putative flavoprotein FAD oxidoreductase [Collimonas fungivorans Ter331] gb|AEK60007.1| putative flavoprotein FAD oxidoreductase [Collimonas fungivorans Ter331] Length = 442 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 268/321 (83%), Positives = 292/321 (90%), Gaps = 1/321 (0%) Query: 1 MTIVPAPVASAKKPSLVVIGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSP 60 M I ++A+KP+L VIGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSP Sbjct: 28 MNIANDTPSTARKPALAVIGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSP 87 Query: 61 VLAGDKSIDDIMLNTRDWYVQNNITLHAGDPVEKIDRRRRTVRSQAGVEIKYDRLLLATG 120 +LAGDKS+DDIMLNT +WY Q+ ITLHAGDPV IDR+RR VRS+AG+E++YDRLLLATG Sbjct: 88 LLAGDKSMDDIMLNTPEWYRQHGITLHAGDPVTGIDRQRRIVRSRAGIELRYDRLLLATG 147 Query: 121 SKPFIIPVPGHELPGVIAFRDIQDVHIMLDVARNHRHAVVIGGGLLGLEAANGLLRQGMD 180 SKPFIIPVPGH+LPGVIAFRDIQDV ML AR+HRHAVVIGGGLLGLEAANGLLRQGMD Sbjct: 148 SKPFIIPVPGHQLPGVIAFRDIQDVETMLAAARSHRHAVVIGGGLLGLEAANGLLRQGMD 207 Query: 181 VTVVHVTDSLMNQQLDKPAAALLKKALEMKGLRFLLNAQTEAIVGPDRVTAVRFKDGSEI 240 VTVVHV DSLM +QLDK AA LLKKALE KGLRFLLNAQT I+G ++VTAVRFKDG+EI Sbjct: 208 VTVVHVMDSLMERQLDKSAAVLLKKALEQKGLRFLLNAQTAEIIGAEQVTAVRFKDGTEI 267 Query: 241 PADLVVMTAGVRPNIGLAKEAGLHCDRAIVVDDTLQTYDPRIYAVGECVQHRQATFGLVA 300 PADLVVMTAGVRPNI LA++AGLHC+RAIVVDDTLQTYDPRIYAVGECVQHR ATFGLVA Sbjct: 268 PADLVVMTAGVRPNIELAQQAGLHCERAIVVDDTLQTYDPRIYAVGECVQHRMATFGLVA 327 Query: 301 PIWDQARVCGAHLAGGSGWRR 321 PIWDQARVCGAHLA G+G RR Sbjct: 328 PIWDQARVCGAHLA-GAGHRR 347 >ref|YP_004228587.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Burkholderia sp. CCGE1001] gb|ADX55527.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Burkholderia sp. CCGE1001] Length = 423 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 260/316 (82%), Positives = 287/316 (90%), Gaps = 1/316 (0%) Query: 6 APVASAKKPSLVVIGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSPVLAGD 65 A A+ +P LVVIGNGMAGMRTVEELLKLAPDLY+ITVFGAEP+GNYNRILLSPVLAG+ Sbjct: 13 ASFAAPARPRLVVIGNGMAGMRTVEELLKLAPDLYEITVFGAEPYGNYNRILLSPVLAGE 72 Query: 66 KSIDDIMLNTRDWYVQNNITLHAGDPVEKIDRRRRTVRSQAGVEIKYDRLLLATGSKPFI 125 K++DDI+LNTRDWY +N I LHAGDPV IDR RR VRSQ+GV++ YDRLL+ATGSKPF+ Sbjct: 73 KTVDDIILNTRDWYEENGIRLHAGDPVVAIDRSRRIVRSQSGVQVTYDRLLIATGSKPFL 132 Query: 126 IPVPGHELPGVIAFRDIQDVHIMLDVARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVH 185 IPVPGH+LPGVIAFRDIQDV ML+ +RNHRHAVVIGGGLLGLEAANGL+RQGM VTVVH Sbjct: 133 IPVPGHDLPGVIAFRDIQDVETMLEASRNHRHAVVIGGGLLGLEAANGLMRQGMSVTVVH 192 Query: 186 VTDSLMNQQLDKPAAALLKKALEMKGLRFLLNAQTEAIVGPDRVTAVRFKDGSEIPADLV 245 VTDSLM +QLD+ A+ LL++ALE KGLRFLL A T AIVGPDRVTAVRF DGSEIPADLV Sbjct: 193 VTDSLMERQLDRSASVLLQQALERKGLRFLLKANTAAIVGPDRVTAVRFDDGSEIPADLV 252 Query: 246 VMTAGVRPNIGLAKEAGLHCDRAIVVDDTLQTYDPRIYAVGECVQHRQATFGLVAPIWDQ 305 VMTAGVRPNI LAK+AGLHC+RAIVVDDTLQTYDPR+YAVGECVQHR ATFGLVAPIWDQ Sbjct: 253 VMTAGVRPNIELAKQAGLHCERAIVVDDTLQTYDPRVYAVGECVQHRTATFGLVAPIWDQ 312 Query: 306 ARVCGAHLAGGSGWRR 321 ARVCGAHLA G+G RR Sbjct: 313 ARVCGAHLA-GAGHRR 327 >ref|YP_003750198.1| nirb nh2 domain (NADH binding fad binding) [Ralstonia solanacearum PSI07] emb|CBJ35576.1| nirB NH2 domain (NADH binding FAD binding) [Ralstonia solanacearum PSI07] emb|CCA79867.1| nirB NH2 domain (NADH binding FAD binding) [blood disease bacterium R229] Length = 409 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 261/314 (83%), Positives = 285/314 (90%), Gaps = 1/314 (0%) Query: 8 VASAKKPSLVVIGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSPVLAGDKS 67 ++ A +P LVVIGNGMAGMRTVEELLKLAPDLYDITVFG EPHGNYNRILLSPVLAG+K Sbjct: 1 MSRAARPKLVVIGNGMAGMRTVEELLKLAPDLYDITVFGEEPHGNYNRILLSPVLAGEKR 60 Query: 68 IDDIMLNTRDWYVQNNITLHAGDPVEKIDRRRRTVRSQAGVEIKYDRLLLATGSKPFIIP 127 +DDIMLNTR WY +N ITLHAGDPV IDR RRTVRS+ GVE++YDRLL+ATGS+PFI+P Sbjct: 61 VDDIMLNTRAWYEENGITLHAGDPVVAIDRPRRTVRSRGGVEVRYDRLLMATGSRPFILP 120 Query: 128 VPGHELPGVIAFRDIQDVHIMLDVARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVHVT 187 VPGH LPGVIAFRDIQDV ML+ ARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVH++ Sbjct: 121 VPGHMLPGVIAFRDIQDVETMLEAARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVHIS 180 Query: 188 DSLMNQQLDKPAAALLKKALEMKGLRFLLNAQTEAIVGPDRVTAVRFKDGSEIPADLVVM 247 D+LM +QLDKPAAALLK ALE KGLRFLL AQT ++G DRV+AVRFKDG+EIPADLVVM Sbjct: 181 DTLMERQLDKPAAALLKVALEAKGLRFLLGAQTTELIGTDRVSAVRFKDGTEIPADLVVM 240 Query: 248 TAGVRPNIGLAKEAGLHCDRAIVVDDTLQTYDPRIYAVGECVQHRQATFGLVAPIWDQAR 307 TAGVRPNI LA+ AGLHC+RAIVVDDTLQTYDPRIYAVGECVQHR ATFGLVAPIWDQAR Sbjct: 241 TAGVRPNIELARSAGLHCERAIVVDDTLQTYDPRIYAVGECVQHRSATFGLVAPIWDQAR 300 Query: 308 VCGAHLAGGSGWRR 321 VC AHLA G+G RR Sbjct: 301 VCAAHLA-GAGHRR 313 >emb|CCA86831.1| nirB NH2 domain (NADH binding FAD binding) [Ralstonia syzygii R24] Length = 409 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 260/314 (82%), Positives = 284/314 (90%), Gaps = 1/314 (0%) Query: 8 VASAKKPSLVVIGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSPVLAGDKS 67 ++ A +P LVVIGNGMAGMRTVEELLKLAPDLYDITVFG EPHGNYNRILLSPVLAG+K Sbjct: 1 MSRAARPKLVVIGNGMAGMRTVEELLKLAPDLYDITVFGEEPHGNYNRILLSPVLAGEKR 60 Query: 68 IDDIMLNTRDWYVQNNITLHAGDPVEKIDRRRRTVRSQAGVEIKYDRLLLATGSKPFIIP 127 +DDIMLNTR WY +N ITLHAGDP IDR RRTVRS+ GVE++YDRLL+ATGS+PFI+P Sbjct: 61 VDDIMLNTRAWYEENGITLHAGDPAVAIDRPRRTVRSRGGVEVRYDRLLMATGSRPFILP 120 Query: 128 VPGHELPGVIAFRDIQDVHIMLDVARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVHVT 187 VPGH LPGVIAFRDIQDV ML+ ARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVH++ Sbjct: 121 VPGHMLPGVIAFRDIQDVETMLEAARNHRHAVVIGGGLLGLEAANGLLRQGMDVTVVHIS 180 Query: 188 DSLMNQQLDKPAAALLKKALEMKGLRFLLNAQTEAIVGPDRVTAVRFKDGSEIPADLVVM 247 D+LM +QLDKPAAALLK ALE KGLRFLL AQT ++G DRV+AVRFKDG+EIPADLVVM Sbjct: 181 DTLMERQLDKPAAALLKVALEAKGLRFLLGAQTTELIGTDRVSAVRFKDGTEIPADLVVM 240 Query: 248 TAGVRPNIGLAKEAGLHCDRAIVVDDTLQTYDPRIYAVGECVQHRQATFGLVAPIWDQAR 307 TAGVRPNI LA+ AGLHC+RAIVVDDTLQTYDPRIYAVGECVQHR ATFGLVAPIWDQAR Sbjct: 241 TAGVRPNIELARSAGLHCERAIVVDDTLQTYDPRIYAVGECVQHRSATFGLVAPIWDQAR 300 Query: 308 VCGAHLAGGSGWRR 321 VC AHLA G+G RR Sbjct: 301 VCAAHLA-GAGHRR 313