BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0245.p (415 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754859.1| menaquinone via futalosine step 2 [Collimona... 561 e-158 ref|YP_047659.1| phosphorylase family protein [Acinetobacter sp.... 285 7e-75 ref|YP_004155546.1| mta/sah nucleosidase [Variovorax paradoxus E... 220 4e-55 ref|YP_004416369.1| methylthioadenosine nucleosidase [Pusillimon... 218 1e-54 ref|YP_002944550.1| adenosylhomocysteine nucleosidase [Variovora... 212 1e-52 >ref|YP_004754859.1| menaquinone via futalosine step 2 [Collimonas fungivorans Ter331] gb|AEK64036.1| Menaquinone via futalosine step 2 [Collimonas fungivorans Ter331] Length = 352 Score = 561 bits (1447), Expect = e-158, Method: Compositional matrix adjust. Identities = 274/347 (78%), Positives = 301/347 (86%), Gaps = 3/347 (0%) Query: 66 KGTSLSAP--LSSLLNKLSCALLALAAVFISTTAHAEQK-RCLSECKPRIGIVSAFGAEA 122 KG LSAP + +L CA+LA AA+ + A + K CLSECKPRIGIVSAFGAEA Sbjct: 2 KGKPLSAPAPVLKMLRLAVCAVLAGAALMTTAGAAPQAKSHCLSECKPRIGIVSAFGAEA 61 Query: 123 DILLEQTQRKHDWRINGNRFTTGVLRGNPVVIVLSGVSMVNAAMVTQLMLDHFHIERLLM 182 DILLEQTQ+K +W+INGNRFTTG LRGN VVIVLSGVS+VNA MVTQLM+DHF +ERLLM Sbjct: 62 DILLEQTQKKREWKINGNRFTTGELRGNQVVIVLSGVSVVNATMVTQLMMDHFRVERLLM 121 Query: 183 SGIAGGVNPANHVGDVVVPESWAMPMEVYWNGDGSLPAACGEAGDVSCLGLKLATENGKA 242 SGIAGGV+PA+HVGDV VPESWAMPMEVYWNGDGSLPA CG AGDVSCLG+KLA +NGK Sbjct: 122 SGIAGGVDPASHVGDVTVPESWAMPMEVYWNGDGSLPAPCGAAGDVSCLGVKLAADNGKP 181 Query: 243 RSDFQFDAPGGKVSSGLFMRDSFVMNAANAPQGEFRFEFQADAQMLAVARDLKPVLATCG 302 R DF+FD P G VSSGLFMRD+FVMN NAPQGEFRFEFQAD +MLA+AR LKP LA CG Sbjct: 182 RPDFKFDTPNGPVSSGLFMRDNFVMNETNAPQGEFRFEFQADPEMLALARTLKPALAKCG 241 Query: 303 PKNPALCVAVQPALIVGGRGISGSAFLANAGYRSYLYDTLQAQLVDMETAAFAQVAYANG 362 PKNP+LCV+VQP L VGGRG+SGSAFLAN GYR+YL+D LQAQ+VDMETAAFAQVAYAN Sbjct: 242 PKNPSLCVSVQPELRVGGRGVSGSAFLANPGYRAYLFDNLQAQVVDMETAAFAQVAYANR 301 Query: 363 VPFIAFRSVSDLAGGNDFKDVGAFFGSGLAETNEASVTLAFLEAWGR 409 VPFIAFRS+SDLAGGNDFKDVGAFFGSGLAETNEASVTLAFLEAW R Sbjct: 302 VPFIAFRSLSDLAGGNDFKDVGAFFGSGLAETNEASVTLAFLEAWSR 348 >ref|YP_047659.1| phosphorylase family protein [Acinetobacter sp. ADP1] emb|CAG69837.1| putative phosphorylase family protein [Acinetobacter sp. ADP1] Length = 349 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 148/323 (45%), Positives = 202/323 (62%), Gaps = 38/323 (11%) Query: 105 LSECKPRIGIVSAFGAEADILLEQTQRKHDWRINGNRFTTGVLRGNPVVIVLSGVSMVNA 164 L++ PR+ I++AFG EAD+L+E T+ K ++ ING +F TG L G VVI LSG+SM NA Sbjct: 42 LTDSTPRLAIIAAFGQEADLLIESTKDKKEYIINGRKFVTGTLEGAEVVITLSGISMTNA 101 Query: 165 AMVTQLMLDHFHIERLLMSGIAGGVNPANHVGDVVVPESWAMPMEVYWNGDGSLPAACGE 224 AM TQ++ DHF+++ ++ SGIAG +NP HVGDVV+ +SW P EVY+N LP+ACG+ Sbjct: 102 AMTTQMITDHFNLKGIVFSGIAGSLNPDLHVGDVVIAKSWLAPNEVYYNNTKDLPSACGK 161 Query: 225 AGDVSCLGLKLATENGKARSDFQFDAPGGKVSSGLFMRDSFVMNAANAPQ---------- 274 GD+SCLG+KLA + P K F+R++ VMN++N Sbjct: 162 PGDISCLGIKLAD-----------NVPAWK---NQFLRETNVMNSSNYKSVALTSKFGDT 207 Query: 275 ------GEFRFEFQADAQML-AVARDLKPVLATCGPKNPALCVAV---QPALIVGGRGIS 324 GE R +F D++ML + + KP P +C P +++G RGIS Sbjct: 208 DVPMAYGEMRVDFPVDSKMLNMIDKVQKPTETKLEP----ICSGANCYHPKIVIGQRGIS 263 Query: 325 GSAFLANAGYRSYLYDTLQAQLVDMETAAFAQVAYANGVPFIAFRSVSDLAGGNDFKDVG 384 AFLANA YR YL+ L VDMETAA AQVAY+N +PFIAFRS+SDLAG + +V Sbjct: 264 SGAFLANAEYREYLHKNLLGDCVDMETAAVAQVAYSNNIPFIAFRSLSDLAGADHDPNVA 323 Query: 385 AFFGSGLAETNEASVTLAFLEAW 407 AFFGSG+A+ N A +T+AF++ W Sbjct: 324 AFFGSGIAQRNAAKLTMAFIDQW 346 >ref|YP_004155546.1| mta/sah nucleosidase [Variovorax paradoxus EPS] gb|ADU37435.1| MTA/SAH nucleosidase [Variovorax paradoxus EPS] Length = 316 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 131/312 (41%), Positives = 176/312 (56%), Gaps = 53/312 (16%) Query: 110 PRIGIVSAFGAEADILLEQTQRKHDWRINGNRFTTGVLRGNPVVIVLSGVSMVNAAMVTQ 169 PRI ++SAF E +LL + Q +NG FTTG L G PVV+ LSG+SM NA M TQ Sbjct: 43 PRIAVISAFEPELKLLLARVQGPAKHSVNGVEFTTGTLEGKPVVLFLSGISMTNATMNTQ 102 Query: 170 LMLDHFHIERLLMSGIAGGVNPANHVGDVVVPESWAMPMEVYWNGDGSLPAACGEAGDVS 229 L+L+ F + ++ SGIAGGVNP+ HVGDV VP W +EV Sbjct: 103 LVLNRFRVTSIVFSGIAGGVNPSLHVGDVTVPAQWGQYLEVL------------------ 144 Query: 230 CLGLKLATENGKARSDFQFDAPGGKVSSGLFMRDSFVMN------------AANAPQGEF 277 +A E APG K ++ F++D+ N +A P+ E Sbjct: 145 -----MARET----------APG-KYTAPPFIKDATFPNFGMVHPRPVEVRSAAKPEIER 188 Query: 278 RFEFQADAQMLAVARDLKPV-LATCGPKNPALCVAVQPALIVGGRGISGSAFLANAGYRS 336 +F F+ D +ML VAR ++ V LA C + C+A +P L++GG G+SG AF+ N +R Sbjct: 189 KFWFEVDPKMLEVARSIRTVDLANC---SAGKCLARKPQLVIGGNGVSGQAFMDNKAFRE 245 Query: 337 YLYDTLQAQLVDMETAAFAQVAYANGVPFIAFRSVSDLAGGNDFK-DVGAFFGSGLAETN 395 Y + T QA ++DMETAA VAY+NGVP+IAFRS+SDLAGG + ++G F G+A N Sbjct: 246 YTFKTFQANVLDMETAAVGMVAYSNGVPYIAFRSLSDLAGGGSGENEMGTFM--GIAADN 303 Query: 396 EASVTLAFLEAW 407 A V LAFL AW Sbjct: 304 SAKVMLAFLAAW 315 >ref|YP_004416369.1| methylthioadenosine nucleosidase [Pusillimonas sp. T7-7] gb|AEC19745.1| methylthioadenosine nucleosidase [Pusillimonas sp. T7-7] Length = 311 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/304 (43%), Positives = 175/304 (57%), Gaps = 31/304 (10%) Query: 110 PRIGIVSAFGAEADILLEQTQRKHDWRINGNRFTTGVLRGNPVVIVLSGVSMVNAAMVTQ 169 PRI ++SAF E +LL++T + + +NG FTTGVL+G PVV+ LSG+SM NAAM TQ Sbjct: 35 PRIAVISAFEPELSLLLDKTDQTRQFSVNGITFTTGVLQGKPVVLFLSGISMTNAAMTTQ 94 Query: 170 LMLDHFHIERLLMSGIAGGVNPANHVGDVVVPESWAMPMEVYWNGDGSLPAACGEAGDVS 229 L LD F+I ++ SGIAGGVNP H+GDVVV W +EV Sbjct: 95 LALDRFNISHIVFSGIAGGVNPDLHIGDVVVAARWGQYLEVL------------------ 136 Query: 230 CLGLKLATENGKARSDFQFDAPG--GKVSSGLFMRDSFVMNAANAPQGEFRFEFQADAQM 287 +A E A F AP G + G+ + +A PQ +F F D M Sbjct: 137 -----MARE--VAPGVFDPSAPNELGFANYGMMRTRPVKVVSAGQPQVHKKFWFDVDPDM 189 Query: 288 LAVARDLKPV-LATCGPKNPALCVAVQPALIVGGRGISGSAFLANAGYRSYLYDTLQAQL 346 LAVA+ L + L +C + + C+ QP L+VGG G+SG+AF+ NA YR Y++ T QA + Sbjct: 190 LAVAQSLNGIELQSC--DSGSQCLQRQPRLMVGGNGVSGAAFVDNAEYRKYVFKTFQANV 247 Query: 347 VDMETAAFAQVAYANGVPFIAFRSVSDLAGGNDFKDVGAFFGSGLAETNEASVTLAFLEA 406 +DME+AA A VAY N VPFI FRS+SDLAGG + + F +A N A V LAFL+A Sbjct: 248 LDMESAACAMVAYTNAVPFIVFRSLSDLAGGGEGANEMHTF-MDIAADNSAKVLLAFLKA 306 Query: 407 WGRA 410 W A Sbjct: 307 WSAA 310 >ref|YP_002944550.1| adenosylhomocysteine nucleosidase [Variovorax paradoxus S110] gb|ACS19284.1| Adenosylhomocysteine nucleosidase [Variovorax paradoxus S110] Length = 314 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/304 (43%), Positives = 169/304 (55%), Gaps = 37/304 (12%) Query: 110 PRIGIVSAFGAEADILLEQTQRKHDWRINGNRFTTGVLRGNPVVIVLSGVSMVNAAMVTQ 169 PRI +VSAF E +LL + Q+ +NG FTTG L G PVV+ LSG+SM NA M TQ Sbjct: 41 PRIAVVSAFQPELTLLLNRLQQPAKHSVNGVEFTTGTLEGKPVVLFLSGISMTNATMNTQ 100 Query: 170 LMLDHFHIERLLMSGIAGGVNPANHVGDVVVPESWAMPMEVYWNGDGSLPAACGEAGDVS 229 L+LD F + ++ SGIAGGVNP HVGDV VP W +EV Sbjct: 101 LVLDRFRVTHIVFSGIAGGVNPQLHVGDVTVPAQWGQYLEVL------------------ 142 Query: 230 CLGLKLATENGKARSDFQFDAPGGKVSS-----GLFMRDSFVMNAANAPQGEFRFEFQAD 284 +A E + F AP + G+ + +A PQ +F F+AD Sbjct: 143 -----MARETAPGK----FTAPPFITDATLPNFGMMHPRPVEVRSAAHPQIVRKFWFEAD 193 Query: 285 AQMLAVARDLKPV-LATCGPKNPALCVAVQPALIVGGRGISGSAFLANAGYRSYLYDTLQ 343 +ML VAR ++ V LA C C+A +P L+VGG G+SG AF+ N R Y + T Q Sbjct: 194 PKMLEVARSIRNVDLANCSAGK---CLARKPHLVVGGNGVSGQAFMDNKALREYTFKTFQ 250 Query: 344 AQLVDMETAAFAQVAYANGVPFIAFRSVSDLAGGNDFKDVGAFFGSGLAETNEASVTLAF 403 A ++DMETAA VAY+NGVP+IAFRS+SDLAGG + ++ F G+A N A V LAF Sbjct: 251 ANVLDMETAAVGMVAYSNGVPYIAFRSLSDLAGGGEGENEMGTF-MGIAADNSAKVMLAF 309 Query: 404 LEAW 407 L AW Sbjct: 310 LAAW 313