BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0240.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774569.1| GntR family transcription regulator protein ... 316 2e-84 ref|ZP_06841409.1| transcriptional regulator, GntR family [Burkh... 297 9e-79 ref|YP_001889983.1| GntR family transcriptional regulator [Burkh... 297 9e-79 ref|ZP_03268524.1| transcriptional regulator, GntR family [Burkh... 297 1e-78 ref|YP_003609853.1| GntR family transcriptional regulator [Burkh... 295 5e-78 >ref|YP_003774569.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62661.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 169/221 (76%), Positives = 190/221 (85%) Query: 12 LDRSRHAAPQVFERLREAIITMQLTPGTVLSRAELALQFGLSQTPIRDALMKLGEEGLVD 71 LDRSRHAAPQVFE LRE II M+L P TVL RAELA Q+GLSQTPIRDAL+KLGEEGLVD Sbjct: 16 LDRSRHAAPQVFEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIRDALIKLGEEGLVD 75 Query: 72 IFPQHATVVRAVDIAMARQAHFLRRSIELEIVHTLAAAPNPALIVRLQASIAKQKILADS 131 IFPQHATVV AV++ +ARQAHFLRRSIELEIVHTLAA + AL+ RL+ SI Q++LA Sbjct: 76 IFPQHATVVSAVNVTLARQAHFLRRSIELEIVHTLAAQADAALVNRLRDSIEVQRVLAGR 135 Query: 132 EDYSEFVEADQAFHRQMYEAANIPDLWAMVRRHSGHLDRLRALHVPIPGKARAVLRDHIA 191 E+Y+EFV ADQAFHRQMYEAA +P+LW+MVRR SGHLDRLR LHVPIPGK VLRDH A Sbjct: 136 ENYAEFVLADQAFHRQMYEAAQVPELWSMVRRQSGHLDRLRNLHVPIPGKTARVLRDHAA 195 Query: 192 IVDAIAAGDPIAAQDALRTHLSNTLSHLDDIRERFPHYLKD 232 IVDAIAAGDP AAQ ALR HLS TL+ L++IR+RFPHY+KD Sbjct: 196 IVDAIAAGDPAAAQAALREHLSGTLAQLEEIRQRFPHYVKD 236 >ref|ZP_06841409.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gb|EFG70935.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 234 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 147/228 (64%), Positives = 179/228 (78%) Query: 5 SPLPQHQLDRSRHAAPQVFERLREAIITMQLTPGTVLSRAELALQFGLSQTPIRDALMKL 64 SP +LDRSRHAAPQVFERLRE I++++L PGTVLSRA+LA+Q+GLSQTP+RDALMKL Sbjct: 6 SPSTATRLDRSRHAAPQVFERLREMILSLELAPGTVLSRADLAIQYGLSQTPVRDALMKL 65 Query: 65 GEEGLVDIFPQHATVVRAVDIAMARQAHFLRRSIELEIVHTLAAAPNPALIVRLQASIAK 124 GEEGLVDIFPQHATVV +++ A QAHFLRRSIELE+V TLA + AL +L+A+IA+ Sbjct: 66 GEEGLVDIFPQHATVVSQINVTSALQAHFLRRSIELEVVRTLAEQRDAALTGQLRATIAR 125 Query: 125 QKILADSEDYSEFVEADQAFHRQMYEAANIPDLWAMVRRHSGHLDRLRALHVPIPGKARA 184 Q L D ++Y +F DQAFHRQMYEAA +P LW +VRR SGH+DRLR LH+P+ GK A Sbjct: 126 QMELRDLKNYEQFSVLDQAFHRQMYEAAGVPQLWDLVRRLSGHIDRLRRLHLPVEGKTMA 185 Query: 185 VLRDHIAIVDAIAAGDPIAAQDALRTHLSNTLSHLDDIRERFPHYLKD 232 V+RDH IV+AI GD AAQ ALR HLS TL+ +D IR P++L D Sbjct: 186 VVRDHTEIVEAIEKGDVEAAQAALRKHLSGTLNQVDQIRNSHPNFLTD 233 >ref|YP_001889983.1| GntR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD20612.1| transcriptional regulator, GntR family [Burkholderia phytofirmans PsJN] Length = 234 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 150/230 (65%), Positives = 178/230 (77%) Query: 3 SPSPLPQHQLDRSRHAAPQVFERLREAIITMQLTPGTVLSRAELALQFGLSQTPIRDALM 62 + SP +LDRSRHAAPQVFERLRE I++++L PGTVLSRA+LA Q+GLSQTP+RDALM Sbjct: 4 NASPTRATRLDRSRHAAPQVFERLREMILSLELAPGTVLSRADLATQYGLSQTPVRDALM 63 Query: 63 KLGEEGLVDIFPQHATVVRAVDIAMARQAHFLRRSIELEIVHTLAAAPNPALIVRLQASI 122 KLGEEGLVDIFPQHATVV +++ A QAHFLRRSIELEIV TLA + ALI +L+A+I Sbjct: 64 KLGEEGLVDIFPQHATVVSQINVTSALQAHFLRRSIELEIVRTLAEQRDAALIAQLRATI 123 Query: 123 AKQKILADSEDYSEFVEADQAFHRQMYEAANIPDLWAMVRRHSGHLDRLRALHVPIPGKA 182 A Q + D ++ +F DQAFHRQMYEAA +P LW +VRR SGH+DRLR LH+P+ GK Sbjct: 124 AGQMEVRDPKNIEQFSLLDQAFHRQMYEAAGVPQLWDLVRRLSGHIDRLRRLHLPVEGKT 183 Query: 183 RAVLRDHIAIVDAIAAGDPIAAQDALRTHLSNTLSHLDDIRERFPHYLKD 232 AV+RDH IVDAI GD AAQ ALR HLS TLS +D IR R P +L D Sbjct: 184 MAVVRDHTEIVDAIERGDAEAAQAALRNHLSGTLSQVDQIRTRHPDFLTD 233 >ref|ZP_03268524.1| transcriptional regulator, GntR family [Burkholderia sp. H160] gb|EDZ99878.1| transcriptional regulator, GntR family [Burkholderia sp. H160] Length = 234 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 147/222 (66%), Positives = 176/222 (79%) Query: 11 QLDRSRHAAPQVFERLREAIITMQLTPGTVLSRAELALQFGLSQTPIRDALMKLGEEGLV 70 +LDRSRHAAPQVFERLRE I++++LTPGTVLSR ELA Q+GLSQTP+RDALMKLGEEGLV Sbjct: 12 RLDRSRHAAPQVFERLREMILSLELTPGTVLSRTELANQYGLSQTPVRDALMKLGEEGLV 71 Query: 71 DIFPQHATVVRAVDIAMARQAHFLRRSIELEIVHTLAAAPNPALIVRLQASIAKQKILAD 130 DI+PQHATVV +++ A QAHFLRRSIELE+V TLA + ALI +L+A+IA+Q L D Sbjct: 72 DIYPQHATVVSQINVTSALQAHFLRRSIELEVVRTLAEQRDAALIAQLRATIARQTELLD 131 Query: 131 SEDYSEFVEADQAFHRQMYEAANIPDLWAMVRRHSGHLDRLRALHVPIPGKARAVLRDHI 190 ++Y +F DQAFHRQMYEAA +P LW +VRR SGH+DRLR L++P+ GK AV+RDH Sbjct: 132 LKNYEQFSLLDQAFHRQMYEAAGVPQLWDLVRRLSGHIDRLRRLNLPVEGKTMAVVRDHT 191 Query: 191 AIVDAIAAGDPIAAQDALRTHLSNTLSHLDDIRERFPHYLKD 232 IVDAI GD AAQ ALR HLS TLS +D IR P +L D Sbjct: 192 EIVDAIDKGDVEAAQAALRKHLSGTLSQIDQIRASHPDFLAD 233 >ref|YP_003609853.1| GntR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG20342.1| transcriptional regulator, GntR family [Burkholderia sp. CCGE1002] Length = 234 Score = 295 bits (754), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 173/222 (77%) Query: 11 QLDRSRHAAPQVFERLREAIITMQLTPGTVLSRAELALQFGLSQTPIRDALMKLGEEGLV 70 +LDRSRHAAPQVFERLRE I++++LTPGTVLSR ELA ++GLSQTP+RDALMKLGEEGLV Sbjct: 12 RLDRSRHAAPQVFERLREMILSLELTPGTVLSRTELANRYGLSQTPVRDALMKLGEEGLV 71 Query: 71 DIFPQHATVVRAVDIAMARQAHFLRRSIELEIVHTLAAAPNPALIVRLQASIAKQKILAD 130 DI+PQHATVV + + A QAHFLRRSIELE+V TLA N LI L+ +IA+Q L D Sbjct: 72 DIYPQHATVVSQIKVTSALQAHFLRRSIELEVVRTLAEQHNATLIAELRVTIARQTELLD 131 Query: 131 SEDYSEFVEADQAFHRQMYEAANIPDLWAMVRRHSGHLDRLRALHVPIPGKARAVLRDHI 190 ++Y EF DQAFHRQMYEAA +P LW +VRR SGH+DRLR L++P+ GK AV+RDH Sbjct: 132 LKNYEEFSLLDQAFHRQMYEAAGVPQLWDLVRRLSGHIDRLRRLNLPVEGKTMAVVRDHA 191 Query: 191 AIVDAIAAGDPIAAQDALRTHLSNTLSHLDDIRERFPHYLKD 232 IVDAI GD AAQ ALR HLS TLS +D IR P++L D Sbjct: 192 EIVDAIEKGDVDAAQAALRKHLSGTLSQIDQIRTSHPNFLAD 233