BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0238.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL... 436 e-120 gb|EGW61550.1| diguanylate cyclase/phosphodiesterase with PAS/PA... 156 6e-36 ref|ZP_05072778.1| ggdef domain protein [Campylobacterales bacte... 139 6e-31 ref|YP_001358504.1| hypothetical protein SUN_1192 [Sulfurovum sp... 127 3e-27 ref|YP_001358689.1| hypothetical protein SUN_1379 [Sulfurovum sp... 126 5e-27 >ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] gb|ADJ63637.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/295 (71%), Positives = 245/295 (83%), Gaps = 2/295 (0%) Query: 1 MIATLSSNDLACCSALLDAVLGLEGIALHEALSNIVSSFLGRSGGRYFSDVPNALDTQQL 60 M++++ ++DLACCSALL+A+ L G+ALH AL I S L R GGRY ++ L Sbjct: 1 MLSSVGTDDLACCSALLEAMQNLHGMALHAALGGIASGLLKRPGGRYVIGASAPVEGG-L 59 Query: 61 LQPVEHEGVSYGHYVFPDPPENYTEAEAGRLASFAALTGRLLQNRADTEKRSRVLDQIES 120 QPV+ EG +GH+VFP Y++ E RLA AA GRL+Q RADTE+R R LDQIE+ Sbjct: 60 CQPVQCEGALFGHFVFPPLTRPYSDQERQRLAMLAAFLGRLMQGRADTEQRVRALDQIEA 119 Query: 121 KLEQQAQILNQMHESVITMDQAGFITSWNRGAEQLFGYTAIEAIGRNVLFLYENEDEDDA 180 KLEQQAQILNQMHESVITMD AGFITSWNRGAEQLFGY+A+EAIGRNVLFLYENEDE+D Sbjct: 120 KLEQQAQILNQMHESVITMDPAGFITSWNRGAEQLFGYSAMEAIGRNVLFLYENEDEED- 178 Query: 181 SLNDVFLAQGGREMEVRRRKKSGEAFWASLSLSVMRDQHGQPIGMIGYINDITERKNAEK 240 SL+D+FL GGREMEVRRRKKSGE FWASLSLSVMRDQ+G PIG+IGY+NDITERKNAEK Sbjct: 179 SLHDLFLEHGGREMEVRRRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEK 238 Query: 241 LIHHLAYYDSLTGLPNRTLLTRTVDQALLAAQQDNIYGCIMFIDLNRFKPINDTL 295 LIHHLAYYD+LTGLPNRTLLTRTVDQAL A+ +N++GC+MFIDLNRFKPINDTL Sbjct: 239 LIHHLAYYDALTGLPNRTLLTRTVDQALEEARHENLHGCVMFIDLNRFKPINDTL 293 >gb|EGW61550.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechlorosoma suillum PS] Length = 833 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/176 (49%), Positives = 117/176 (66%), Gaps = 8/176 (4%) Query: 81 ENYTEAEAGRLASFAALTGRLLQNRADTEKRSRVLDQIESKLEQQAQILNQMHESVITMD 140 E Y+ E R AAL L R R L ++E+K+E+Q+QIL+ +H+SVITMD Sbjct: 116 EGYSALEHRRFGDLAALLAGALHARQAFNLRQEDLARMEAKVEEQSQILDHIHDSVITMD 175 Query: 141 QAGFITSWNRGAEQLFGYTAIEAIGRNVLFLYEN------EDEDDASLNDVFLAQGGREM 194 +G+I WN+GAE+LFGYTA EA+GR++LFLY + E+EDD N FL G RE Sbjct: 176 LSGYIMGWNKGAERLFGYTAAEAVGRHILFLYADDGSETLEEEDDLFYN-AFLDHGRREF 234 Query: 195 EVRRRKKSGEAFWASLSLSVMRDQHGQPIGMIGYINDITER-KNAEKLIHHLAYYD 249 EVRRRKKSGE FWAS+SLS+ R++ G+P G+IGY+ DIT + + EKL H ++ Sbjct: 235 EVRRRKKSGEVFWASVSLSLSRNEAGEPAGLIGYLVDITNQLEREEKLRLHAKIFE 290 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 2/179 (1%) Query: 119 ESKLEQQAQILNQMHESVITMDQAGFITSWNRGAEQLFGYTAIEA-IGRNVLFLYENEDE 177 E KL A+I E+VI D + S N+ + G++ E + L +D Sbjct: 279 EEKLRLHAKIFEHNSEAVIVTDAMQRVLSVNKAFCDITGFSEAEVRMSLPALLQPTRDDP 338 Query: 178 DDASLNDVFLAQGGR-EMEVRRRKKSGEAFWASLSLSVMRDQHGQPIGMIGYINDITERK 236 + A+ V LA G + E+ R+K+G+ + +S+S +++ G +DI+ERK Sbjct: 339 NLAAEIQVALASSGAWQGELWDRRKNGDTYPVWVSISSVKNTRGILSHYFLVFSDISERK 398 Query: 237 NAEKLIHHLAYYDSLTGLPNRTLLTRTVDQALLAAQQDNIYGCIMFIDLNRFKPINDTL 295 AE+ I+ LAYYD+LTGLPNR+LL ++QAL+ AQ++ +G ++F+DL+RFK IND+ Sbjct: 399 EAERQIYRLAYYDALTGLPNRSLLFSLLEQALIEAQRNQTHGAVLFVDLDRFKTINDSF 457 >ref|ZP_05072778.1| ggdef domain protein [Campylobacterales bacterium GD 1] gb|EDZ61261.1| ggdef domain protein [Campylobacterales bacterium GD 1] Length = 744 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 119/193 (61%), Gaps = 16/193 (8%) Query: 115 LDQIESKLEQQAQILNQMHESVITMDQAGFITSWNRGAEQLFGYTAIEAIGRNV--LFLY 172 + +++ K QQ QI+ Q+H+SVI+ D G+ITSWN+G++ L YT E + ++V LFL Sbjct: 179 IQEMQLKYSQQVQIIEQIHDSVISTDLNGYITSWNKGSQILLEYTEEEMLTKHVSSLFL- 237 Query: 173 ENEDEDDASLND---VFLAQGGREMEVRRRKKSGEAFWASLSLSVMRDQHGQPIGMIGYI 229 +ED +L + + G + R KKSG+ + SLSLS+++D+ G P ++GY Sbjct: 238 ---EEDHKALQEGTQELIKHGEYHADKRLVKKSGDIIFVSLSLSILKDEKGNPTALVGYC 294 Query: 230 NDITERKNAEK-------LIHHLAYYDSLTGLPNRTLLTRTVDQALLAAQQDNIYGCIMF 282 DIT+RK AE+ ++H+ A++D LT LPNRT ++QA+ A+++ + + Sbjct: 295 QDITKRKEAEEKLYEQKNILHYQAHHDELTQLPNRTFFNERLEQAIEKAKRNKTLIALFY 354 Query: 283 IDLNRFKPINDTL 295 IDL+ FK IND+L Sbjct: 355 IDLDHFKQINDSL 367 >ref|YP_001358504.1| hypothetical protein SUN_1192 [Sulfurovum sp. NBC37-1] dbj|BAF72147.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1223 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 106/186 (56%), Gaps = 8/186 (4%) Query: 118 IESKLEQQAQILNQMHESVITMDQAGFITSWNRGAEQLFGYTAIEAIGRNVLFLYENEDE 177 IE K +QAQIL Q+H++VI+ D I WN GA +L GY A E IGRN+ LY ++ Sbjct: 663 IEKKEIEQAQILEQIHDAVISTDLDNKIIHWNHGATELLGYDASEMIGRNIDILYPEDEL 722 Query: 178 DDAS-LNDVFLAQGGREMEVRRRKKSGEAFWASLSLSVMRDQHGQPIGMIGYINDITERK 236 A + L G ++R++ K G+ + +S SV+RD+ + IG+ Y DI+++K Sbjct: 723 KKAQWMKMQTLLYGSYRDQIRKQTKEGKMIYTDVSASVLRDEKKRIIGITRYSQDISQKK 782 Query: 237 NAE-------KLIHHLAYYDSLTGLPNRTLLTRTVDQALLAAQQDNIYGCIMFIDLNRFK 289 E K ++ AY+D LT LPNRTL ++Q + A + N + FIDL+ FK Sbjct: 783 EIELELLEQTKQLNFQAYHDPLTQLPNRTLFNDRLEQTITYAHRHNEKFGVFFIDLDNFK 842 Query: 290 PINDTL 295 INDTL Sbjct: 843 LINDTL 848 >ref|YP_001358689.1| hypothetical protein SUN_1379 [Sulfurovum sp. NBC37-1] dbj|BAF72332.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 703 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 118/193 (61%), Gaps = 14/193 (7%) Query: 117 QIESKLEQQAQILNQMHESVITMDQAGFITSWNRGAEQLFGYTAIEAIGRNVLFLYENED 176 +++ K QQAQ+L Q+H++VI +D GFI SWN+G+E LF Y A E IG+N L+ + Sbjct: 134 ELQLKYSQQAQVLEQIHDAVILLDMDGFIRSWNKGSEILFEYRADEVIGKNFSILFSD-- 191 Query: 177 EDDASLNDVFLAQ----GGREMEVRRRKKSGEAFWASLSLSVMRDQHGQPIGMIGYINDI 232 + S + ++++ G + E+ +KKSGE +A S S++++Q+G+ ++ I+DI Sbjct: 192 -NITSAYEKWISELKENGEYKGEMFLQKKSGEPLYAVFSFSLLKNQNGETTEVVSLIHDI 250 Query: 233 TERKNAE-------KLIHHLAYYDSLTGLPNRTLLTRTVDQALLAAQQDNIYGCIMFIDL 285 TE+K AE ++ + A++D+LT LPNR L ++Q++ + + FIDL Sbjct: 251 TEQKKAEAVLQEQKNILRYQAHHDALTRLPNRVLFFDRLEQSIRKTARSEKDFALFFIDL 310 Query: 286 NRFKPINDTLCWS 298 ++FK IND+L S Sbjct: 311 DKFKHINDSLGHS 323