BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0236.p (422 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775543.1| anaerobic coproporphyrinogen III oxidase oxi... 696 0.0 ref|YP_001353024.1| coproporphyrinogen III oxidase [Janthinobact... 688 0.0 ref|YP_001100384.1| coproporphyrinogen III oxidase [Herminiimona... 686 0.0 ref|YP_004752479.1| coproporphyrinogen III oxidase-like protein,... 655 0.0 ref|ZP_08272972.1| Radical SAM family enzyme, coproporphyrinogen... 645 0.0 >ref|YP_003775543.1| anaerobic coproporphyrinogen III oxidase oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ63635.1| anaerobic coproporphyrinogen III oxidase oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 414 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/419 (80%), Positives = 370/419 (88%), Gaps = 7/419 (1%) Query: 2 IIPIKPVGVSLSSLPSQSGQSGQQDGPAQAALAFLKPGSLQLSALPPLSLYVHFPWCVKK 61 +I IKPV V+ + +GQ GPAQAALAFLKPGSLQL+ALPPLSLYVHFPWCV+K Sbjct: 1 MISIKPVPVT-----AVAGQGA--SGPAQAALAFLKPGSLQLTALPPLSLYVHFPWCVRK 53 Query: 62 CPYCDFNSHEVKGSFPEDIYLDALRADLESALPLIWGRKIYSVFIGGGTPSLLSAAGLDR 121 CPYCDFNSHEVK FPE YLDALR DLE ALPLIWGRKIYS+FIGGGTPSLLSAAGLDR Sbjct: 54 CPYCDFNSHEVKDGFPEQEYLDALRLDLEQALPLIWGRKIYSIFIGGGTPSLLSAAGLDR 113 Query: 122 LLSDIRTLLPLDIDIEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSAHLAALGRI 181 LLSD+RTLLPLD DIEITMEANPGTFEA+KF+SYR SGINRLSIGIQSFNSAHL ALGRI Sbjct: 114 LLSDLRTLLPLDADIEITMEANPGTFEADKFRSYRDSGINRLSIGIQSFNSAHLQALGRI 173 Query: 182 HDGDQARKAVEIAHANFDNFNLDLMYALPSQSVEEARRDIQTAIDCAPPHLSLYHLTLEP 241 HDG QA +AVEIAHANFDNFNLDLMYALP Q++E+AR DIQTAID APPHLSLYHLTLEP Sbjct: 174 HDGGQAHQAVEIAHANFDNFNLDLMYALPQQTLEQARTDIQTAIDFAPPHLSLYHLTLEP 233 Query: 242 NTLFAKYPPQVPDDDTSADMQDMITELTGAAGYQHYEVSAYAKPKRQARHNLNYWQFGDY 301 NTLFAK+PP VPD+DTSADMQDMI ELT AGY +YEVSAYA+P R+ARHNLNYWQFGDY Sbjct: 234 NTLFAKFPPAVPDEDTSADMQDMIGELTTQAGYGNYEVSAYAQPGRRARHNLNYWQFGDY 293 Query: 302 LGIGAGAHSKLSFPHRIVRQARHKHPQTYMEKMRTGNAIQEEGEIGRDALGFEFMLNALR 361 LGIGAGAHSKLSFPHRIVRQ R+KHPQ Y++ ++ G IQEE EIGRDALGFEFMLNALR Sbjct: 294 LGIGAGAHSKLSFPHRIVRQMRYKHPQAYLQHIKAGTHIQEEAEIGRDALGFEFMLNALR 353 Query: 362 LEDGFPVNLFNERTGMSINAIDAALNDAEKKGLLYRDHAIIRPTELGRRFLNDLQEMFL 420 L +GFP NLF ERTG+++N I L+ AE+KG+LYRDHA+IRPT LGRRFLNDLQE+FL Sbjct: 354 LTEGFPPNLFAERTGLALNQIGKQLDLAERKGMLYRDHALIRPTPLGRRFLNDLQEIFL 412 >ref|YP_001353024.1| coproporphyrinogen III oxidase [Janthinobacterium sp. Marseille] gb|ABR88674.1| oxygen-independent coproporphyrinogen III oxidase [Janthinobacterium sp. Marseille] Length = 414 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/419 (77%), Positives = 367/419 (87%), Gaps = 7/419 (1%) Query: 2 IIPIKPVGVSLSSLPSQSGQSGQQDGPAQAALAFLKPGSLQLSALPPLSLYVHFPWCVKK 61 +IPIKP+ S++ SG PA+ A A+LKPG+L L+ALPPLSLYVHFPWCVKK Sbjct: 1 MIPIKPISNSIADALDHSG-------PARVATAYLKPGALSLTALPPLSLYVHFPWCVKK 53 Query: 62 CPYCDFNSHEVKGSFPEDIYLDALRADLESALPLIWGRKIYSVFIGGGTPSLLSAAGLDR 121 CPYCDFNSHE G FPED YL ALRADLE ALPLIWGRKIY++FIGGGTPSLLSAAGLDR Sbjct: 54 CPYCDFNSHEATGGFPEDEYLSALRADLEMALPLIWGRKIYTIFIGGGTPSLLSAAGLDR 113 Query: 122 LLSDIRTLLPLDIDIEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSAHLAALGRI 181 LLSDIRTLLPLD +EITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNS HL ALGRI Sbjct: 114 LLSDIRTLLPLDGAVEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSRHLDALGRI 173 Query: 182 HDGDQARKAVEIAHANFDNFNLDLMYALPSQSVEEARRDIQTAIDCAPPHLSLYHLTLEP 241 H+GD+A++AV+IA +NFDNFNLDLMYALPSQ+++EAR D+QTAI APPHLSLYHLT+EP Sbjct: 174 HNGDEAQRAVDIAASNFDNFNLDLMYALPSQTLDEARLDVQTAIAYAPPHLSLYHLTMEP 233 Query: 242 NTLFAKYPPQVPDDDTSADMQDMITELTGAAGYQHYEVSAYAKPKRQARHNLNYWQFGDY 301 NT+FAKYPP VPDDD SADMQDMI + TGAAGYQHYEVSAYA+PKRQARHNLNYWQFGDY Sbjct: 234 NTVFAKYPPVVPDDDASADMQDMIEQETGAAGYQHYEVSAYAQPKRQARHNLNYWQFGDY 293 Query: 302 LGIGAGAHSKLSFPHRIVRQARHKHPQTYMEKMRTGNAIQEEGEIGRDALGFEFMLNALR 361 LGIGAGAH+KLSFPHR++RQAR+K P++YME+MR GN IQEE EI R LGFEFMLNA+R Sbjct: 294 LGIGAGAHTKLSFPHRVIRQARYKQPKSYMEQMRLGNPIQEEKEITRSELGFEFMLNAMR 353 Query: 362 LEDGFPVNLFNERTGMSINAIDAALNDAEKKGLLYRDHAIIRPTELGRRFLNDLQEMFL 420 L +G VN+F ERTGM +NA++ ALN+AE KGLLYRDH I+PT LG+RFLNDLQEMFL Sbjct: 354 LVEGVEVNMFAERTGMPLNAVERALNEAEAKGLLYRDHKTIKPTVLGQRFLNDLQEMFL 412 >ref|YP_001100384.1| coproporphyrinogen III oxidase [Herminiimonas arsenicoxydans] emb|CAL62261.1| Putative oxygen-independent coproporphyrinogen III oxidase [Herminiimonas arsenicoxydans] Length = 414 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/421 (76%), Positives = 366/421 (86%), Gaps = 7/421 (1%) Query: 2 IIPIKPVGVSLSSLPSQSGQSGQQDGPAQAALAFLKPGSLQLSALPPLSLYVHFPWCVKK 61 +IPIKP+G + + + PA+AA A+L+PG+L L+ALPPLSLYVHFPWCVKK Sbjct: 1 MIPIKPIG-------NDAAFNLDHSQPARAATAYLQPGALNLTALPPLSLYVHFPWCVKK 53 Query: 62 CPYCDFNSHEVKGSFPEDIYLDALRADLESALPLIWGRKIYSVFIGGGTPSLLSAAGLDR 121 CPYCDFNSHE G FPED YL ALRADLE ALPLIWGRKIY++FIGGGTPSLLSA GLDR Sbjct: 54 CPYCDFNSHEATGGFPEDEYLSALRADLEQALPLIWGRKIYTIFIGGGTPSLLSAKGLDR 113 Query: 122 LLSDIRTLLPLDIDIEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSAHLAALGRI 181 LLSDIRTLLPLD +EITMEANPGTFEAEKFKSYR+SG+NRLSIGIQSFN+ HL ALGRI Sbjct: 114 LLSDIRTLLPLDGAVEITMEANPGTFEAEKFKSYRSSGVNRLSIGIQSFNARHLQALGRI 173 Query: 182 HDGDQARKAVEIAHANFDNFNLDLMYALPSQSVEEARRDIQTAIDCAPPHLSLYHLTLEP 241 HDGD+AR+AV+IA ANF+NFNLDLMYALPSQ++EEAR+D+QTAI APPHLSLYHLT+EP Sbjct: 174 HDGDEARRAVDIAMANFENFNLDLMYALPSQTLEEARQDVQTAIAFAPPHLSLYHLTMEP 233 Query: 242 NTLFAKYPPQVPDDDTSADMQDMITELTGAAGYQHYEVSAYAKPKRQARHNLNYWQFGDY 301 NT+FAKYPP VPDDD SADMQDMI E T AAGYQHYEVSAYA+PKRQARHNLNYWQFGDY Sbjct: 234 NTVFAKYPPVVPDDDASADMQDMIAEETTAAGYQHYEVSAYAQPKRQARHNLNYWQFGDY 293 Query: 302 LGIGAGAHSKLSFPHRIVRQARHKHPQTYMEKMRTGNAIQEEGEIGRDALGFEFMLNALR 361 LGIGAGAH+KLSFPHR++RQAR+K P++YME+MR GN IQEE EI R LGFEFMLNA+R Sbjct: 294 LGIGAGAHTKLSFPHRVIRQARYKQPKSYMEQMRLGNPIQEETEISRSELGFEFMLNAMR 353 Query: 362 LEDGFPVNLFNERTGMSINAIDAALNDAEKKGLLYRDHAIIRPTELGRRFLNDLQEMFLF 421 L +G VNLF +RTGM +NAI+ AL AE KGLLYRDH I+PTELG+RFLNDLQ+MFL Sbjct: 354 LTNGVEVNLFADRTGMPLNAIERALRAAEDKGLLYRDHKTIKPTELGQRFLNDLQQMFLA 413 Query: 422 E 422 E Sbjct: 414 E 414 >ref|YP_004752479.1| coproporphyrinogen III oxidase-like protein, oxygen-independent [Collimonas fungivorans Ter331] gb|AEK61656.1| coproporphyrinogen III oxidase-like protein, oxygen-independent [Collimonas fungivorans Ter331] Length = 418 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/424 (74%), Positives = 360/424 (84%), Gaps = 9/424 (2%) Query: 2 IIPIKPVGVSLSSLPSQSGQSGQQDGPAQAALAFLK---PGSLQLSALPPLSLYVHFPWC 58 +IPIKP+G +P Q+ +S D P+ AA A L PG+L LSALPPLSLY+HFPWC Sbjct: 1 MIPIKPIG-----MPGQA-KSQAADKPSAAAQAALAYLQPGALSLSALPPLSLYIHFPWC 54 Query: 59 VKKCPYCDFNSHEVKGSFPEDIYLDALRADLESALPLIWGRKIYSVFIGGGTPSLLSAAG 118 VKKCPYCDFNSHE KG FPE+ YL ALR DLE++LPLIWGRKIY++FIGGGTPSL+SAAG Sbjct: 55 VKKCPYCDFNSHEAKGGFPEEEYLAALRLDLEASLPLIWGRKIYTIFIGGGTPSLMSAAG 114 Query: 119 LDRLLSDIRTLLPLDIDIEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSAHLAAL 178 LDRL+SD+R+LLPLD EITMEANPGTFE EKFKSYR SGINRLSIGIQSFN HL AL Sbjct: 115 LDRLMSDVRSLLPLDGAAEITMEANPGTFEVEKFKSYRNSGINRLSIGIQSFNGRHLQAL 174 Query: 179 GRIHDGDQARKAVEIAHANFDNFNLDLMYALPSQSVEEARRDIQTAIDCAPPHLSLYHLT 238 GRIHD +AR+AVEIAHA FDNFNLDLMYALPSQ++EEA++D+ TAI APPHLSLYHLT Sbjct: 175 GRIHDDGEARRAVEIAHATFDNFNLDLMYALPSQTLEEAQQDVATAIGFAPPHLSLYHLT 234 Query: 239 LEPNTLFAKYPPQVPDDDTSADMQDMITELTGAAGYQHYEVSAYAKPKRQARHNLNYWQF 298 LEPNT FAKYPP VPDDD SA+MQDMI+ T AAGY HYEVSAYA+ RQARHNLNYWQF Sbjct: 235 LEPNTYFAKYPPVVPDDDASAEMQDMISAHTSAAGYGHYEVSAYAQAGRQARHNLNYWQF 294 Query: 299 GDYLGIGAGAHSKLSFPHRIVRQARHKHPQTYMEKMRTGNAIQEEGEIGRDALGFEFMLN 358 GDYLGIGAGAHSKLSFPHR++RQ R+K P+ Y+E R GN +QEE EIGRD LGFEFMLN Sbjct: 295 GDYLGIGAGAHSKLSFPHRVIRQMRYKQPKAYLEHSRLGNVVQEETEIGRDDLGFEFMLN 354 Query: 359 ALRLEDGFPVNLFNERTGMSINAIDAALNDAEKKGLLYRDHAIIRPTELGRRFLNDLQEM 418 ALRL +GF VNLF+ERTG+++N I+ +LN AE KGLLYRDH IIRPTELGRRFLNDLQ++ Sbjct: 355 ALRLNNGFEVNLFSERTGLALNTIEKSLNQAEAKGLLYRDHKIIRPTELGRRFLNDLQQV 414 Query: 419 FLFE 422 FL + Sbjct: 415 FLLD 418 >ref|ZP_08272972.1| Radical SAM family enzyme, coproporphyrinogen III oxidase-like protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33594.1| Radical SAM family enzyme, coproporphyrinogen III oxidase-like protein [Oxalobacteraceae bacterium IMCC9480] Length = 418 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/423 (73%), Positives = 353/423 (83%), Gaps = 11/423 (2%) Query: 2 IIPIKPVGVSLSSLPSQSGQSGQQDGPAQAALAFLKPGSLQLSALPPLSLYVHFPWCVKK 61 +IPI P+ P++S D A A +L+PG L LSALPPL+LY+HFPWCVKK Sbjct: 1 MIPIIPIQ------PARSAAVPVADA-ATVANTYLRPGILNLSALPPLALYIHFPWCVKK 53 Query: 62 CPYCDFNSHEVKG----SFPEDIYLDALRADLESALPLIWGRKIYSVFIGGGTPSLLSAA 117 CPYCDFNSHEV G FPE+ YLDA+RADLESALPLIWGRKIY++FIGGGTPSL+SAA Sbjct: 54 CPYCDFNSHEVAGQSQSGFPEEAYLDAVRADLESALPLIWGRKIYTIFIGGGTPSLMSAA 113 Query: 118 GLDRLLSDIRTLLPLDIDIEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSAHLAA 177 GLDRL+SD+RTLLPLD EITMEANPGTFE EKF+SYRASGINRLSIGIQSFN HL A Sbjct: 114 GLDRLMSDVRTLLPLDGAAEITMEANPGTFEVEKFRSYRASGINRLSIGIQSFNGEHLRA 173 Query: 178 LGRIHDGDQARKAVEIAHANFDNFNLDLMYALPSQSVEEARRDIQTAIDCAPPHLSLYHL 237 LGRIHD D+AR+AV+IAH+ FDNFNLDLMYALPSQ++ EA +DI+TA+ APPHLSLYHL Sbjct: 174 LGRIHDHDEARRAVDIAHSTFDNFNLDLMYALPSQTLAEATQDIRTALGYAPPHLSLYHL 233 Query: 238 TLEPNTLFAKYPPQVPDDDTSADMQDMITELTGAAGYQHYEVSAYAKPKRQARHNLNYWQ 297 T+EPNT+FAK+PP +PDDD SADMQDMI TGAAGY HYEVSAYA+P RQ+RHNLNYWQ Sbjct: 234 TMEPNTVFAKFPPALPDDDLSADMQDMIAAETGAAGYGHYEVSAYAQPGRQSRHNLNYWQ 293 Query: 298 FGDYLGIGAGAHSKLSFPHRIVRQARHKHPQTYMEKMRTGNAIQEEGEIGRDALGFEFML 357 FGDYLG+GAGAHSKLSFPHRI+RQAR K P++YME M G+AIQEE EI R LGFEFML Sbjct: 294 FGDYLGVGAGAHSKLSFPHRIIRQARFKQPKSYMENMARGSAIQEENEIARGELGFEFML 353 Query: 358 NALRLEDGFPVNLFNERTGMSINAIDAALNDAEKKGLLYRDHAIIRPTELGRRFLNDLQE 417 N LRL GF VNLF ERTG+ +NA+++AL AE KGLL+RDH IRPT LG+RFLNDLQ+ Sbjct: 354 NTLRLTSGFQVNLFAERTGLGLNAVESALQAAEAKGLLFRDHKTIRPTLLGQRFLNDLQQ 413 Query: 418 MFL 420 MFL Sbjct: 414 MFL 416