BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0234.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum ...   172   1e-41
ref|YP_004753102.1| ribonuclease PH [Collimonas fungivorans Ter3...   169   1e-40
ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marse...   166   9e-40
ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium I...   166   1e-39
ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans] >gi|...   165   2e-39

>ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1]
 emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae]
 gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/105 (80%), Positives = 93/105 (88%)

Query: 1   MVAAYDAFSVLLGRGLITAIPVKHFVAAISVGVYRGVPVLDLDYVEDSDCDTDMNVVMTD 60
           MVAAYDAF+ L  +GLI AIPVKHFVAAISVGV++GVPVLDLDY EDSDCDTDMNVVMTD
Sbjct: 138 MVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLDYPEDSDCDTDMNVVMTD 197

Query: 61  AGHFVEVQGTAEGAAFDRNTLNSLLDIADKGIKELLALQKETLGL 105
           AGHFVEVQGTAEGAAFDR TLN+LLD+A +GI  L  LQ++ LGL
Sbjct: 198 AGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQALGL 242


>ref|YP_004753102.1| ribonuclease PH [Collimonas fungivorans Ter331]
 gb|AEK62279.1| Ribonuclease PH [Collimonas fungivorans Ter331]
          Length = 244

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/106 (78%), Positives = 90/106 (84%)

Query: 1   MVAAYDAFSVLLGRGLITAIPVKHFVAAISVGVYRGVPVLDLDYVEDSDCDTDMNVVMTD 60
           MVAAYDAF+ LL    I AIP+KHFVAAISVGVY+G PVLDLDYVEDS CDTDMNVVMTD
Sbjct: 138 MVAAYDAFARLLESKAIAAIPLKHFVAAISVGVYQGTPVLDLDYVEDSGCDTDMNVVMTD 197

Query: 61  AGHFVEVQGTAEGAAFDRNTLNSLLDIADKGIKELLALQKETLGLA 106
            GHF+EVQGTAEG AFDR TLNSLLD+A  GI EL+ LQK+ LGLA
Sbjct: 198 TGHFIEVQGTAEGVAFDRPTLNSLLDLAQGGIGELIQLQKQALGLA 243


>ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille]
 gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille]
          Length = 244

 Score =  166 bits (421), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 78/106 (73%), Positives = 93/106 (87%)

Query: 1   MVAAYDAFSVLLGRGLITAIPVKHFVAAISVGVYRGVPVLDLDYVEDSDCDTDMNVVMTD 60
           MVAAYDAFS L+ + +I AIP+KHFVAAISVGVY+G PVLDLDY EDSDCDTDMN+VMTD
Sbjct: 138 MVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDEDSDCDTDMNIVMTD 197

Query: 61  AGHFVEVQGTAEGAAFDRNTLNSLLDIADKGIKELLALQKETLGLA 106
           AGHF+EVQGTAEGAAFDR T++ LLD+A  GI++L+ LQK+ L +A
Sbjct: 198 AGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQALAIA 243


>ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480]
          Length = 244

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/105 (74%), Positives = 94/105 (89%)

Query: 1   MVAAYDAFSVLLGRGLITAIPVKHFVAAISVGVYRGVPVLDLDYVEDSDCDTDMNVVMTD 60
           MVAA+DAFS L+  G+++A+P+KHFVAAISVGV++G PVLDLDY EDS CDTDMNVVMTD
Sbjct: 138 MVAAHDAFSKLVDTGVLSAMPLKHFVAAISVGVFQGTPVLDLDYDEDSTCDTDMNVVMTD 197

Query: 61  AGHFVEVQGTAEGAAFDRNTLNSLLDIADKGIKELLALQKETLGL 105
           AGHF+EVQGTAEGAAFDR T+N LLD+AD GI++L+ALQ+  LGL
Sbjct: 198 AGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQRRELGL 242


>ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans]
 emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 93/106 (87%)

Query: 1   MVAAYDAFSVLLGRGLITAIPVKHFVAAISVGVYRGVPVLDLDYVEDSDCDTDMNVVMTD 60
           MVAAYDAFS L+ + +I AIP+KHFVAAISVGVY+G PVLDLDY EDSDCDTDMN+VMTD
Sbjct: 138 MVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLDYDEDSDCDTDMNIVMTD 197

Query: 61  AGHFVEVQGTAEGAAFDRNTLNSLLDIADKGIKELLALQKETLGLA 106
           AGHF+EVQGTAEGAAFDR T++ LLD+A  GI++L+ +QK+ L +A
Sbjct: 198 AGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQALAIA 243