BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0227.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775535.1| LysR family transcription regulator protein ... 276 1e-72 ref|YP_002947107.1| LysR family transcriptional regulator [Vario... 215 5e-54 ref|YP_004158221.1| LysR family transcriptional regulator [Vario... 213 2e-53 ref|ZP_08406161.1| LysR family transcriptional regulator [Hylemo... 210 1e-52 gb|EGH50811.1| LysR family transcriptional regulator [Pseudomona... 210 1e-52 >ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63627.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 136/176 (77%), Positives = 150/176 (85%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLNDI +FV VVRAGSFAAAGRRL MP NTISRRLQ LE ++GVRLLQRSTRQLNMTA Sbjct: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AGREFFERCAPG+EDI+HA ASL++ EP G LRVAAP DFFDNF++EWM EFM YP+ Sbjct: 61 AGREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARKLGASHRGLLASPSYLARRG 176 VQLEF+L+D R DLIAEGIDLAFR G LPDSSLVARKL SH L+ASP YL R+G Sbjct: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQG 176 >ref|YP_002947107.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS21841.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 310 Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 107/180 (59%), Positives = 140/180 (77%), Gaps = 1/180 (0%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLNDI++FV+VVR GSFA A RRLG+P NT+SRR+Q LE LG RL+QRSTR+L +T+ Sbjct: 1 MLDLNDIAMFVQVVRHGSFAGAARRLGLPPNTVSRRIQQLEAQLGTRLMQRSTRRLTLTS 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AG+ F ERCA ++ + AG +L G+++P G++RVAA ADFFD F MEW+A+F+ +P Sbjct: 61 AGQAFHERCAGPVDGLVEAGQALITGSQQPSGLVRVAATADFFDFFPMEWVADFLAAHPL 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARK-LGASHRGLLASPSYLARRGARA 179 V+++F+LSD R DLIAE ID+AFR G LPDS V RK LGA G++ASP+Y+A RGA A Sbjct: 121 VRVDFVLSDARADLIAEQIDIAFRGGALPDSGYVGRKLLGARTDGMVASPAYIAARGAPA 180 >ref|YP_004158221.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU40110.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 309 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/180 (58%), Positives = 139/180 (77%), Gaps = 1/180 (0%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLN I++FV+VVR GSFA AGRRLG+P NT+SRR+Q LE LG RL+QRSTR+L +T+ Sbjct: 1 MLDLNHIAMFVQVVRHGSFAEAGRRLGLPPNTVSRRIQELEAQLGTRLMQRSTRKLTLTS 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AG+ F ERCA ++ + AG +L G++EP G++RVAA ADFFD F MEW+AEF+ P Sbjct: 61 AGQAFHERCAGSVDGLVEAGQALITGSQEPSGLVRVAATADFFDFFPMEWVAEFLAANPL 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARK-LGASHRGLLASPSYLARRGARA 179 V+++F+LSD + DLIA+ ID+AFR G+LPD+ V RK LG GL+ASP+Y+A RGA A Sbjct: 121 VRVDFVLSDAKADLIADQIDVAFRGGELPDTGYVGRKLLGPRTDGLVASPAYIAARGAPA 180 >ref|ZP_08406161.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI76714.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 309 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 107/181 (59%), Positives = 137/181 (75%), Gaps = 1/181 (0%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLND++VFV+VVR GSFA A R+LG+P NT+SRR+Q LE LG RL+QRSTR+L++T Sbjct: 1 MLDLNDVAVFVQVVRYGSFAEAARQLGIPPNTLSRRVQQLETQLGTRLMQRSTRKLSLTT 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AG+EF +RCA +E + AG SL N P G++RVAAPADFFD F MEW+A F+ +PR Sbjct: 61 AGQEFHDRCAQAVEGLVDAGQSLLSRNETPSGLVRVAAPADFFDFFPMEWLASFLAEHPR 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARK-LGASHRGLLASPSYLARRGARA 179 V+L+F+LSD R DLIA+ ID+A R G L DS L AR+ L A GL+ASP+Y+A RG A Sbjct: 121 VRLDFVLSDARADLIADRIDVAIRGGVLEDSGLFARRVLDAGLDGLVASPAYIAARGMPA 180 Query: 180 A 180 + Sbjct: 181 S 181 >gb|EGH50811.1| LysR family transcriptional regulator [Pseudomonas syringae Cit 7] Length = 303 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 101/177 (57%), Positives = 133/177 (75%), Gaps = 1/177 (0%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 + DLND+++FV+VVR+GSFA A R LGMPSNTISRR+Q LE L RLLQRSTR+L +T Sbjct: 2 VFDLNDVALFVQVVRSGSFAQAARHLGMPSNTISRRVQQLEMQLDTRLLQRSTRKLVLTQ 61 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AG +F+ RC ++ + A L+ G EPGG++R+AA ADFFD F+M+W+A+F+ RYPR Sbjct: 62 AGEDFYGRCVGAVDGVMEAAEQLASGRDEPGGLVRIAAMADFFDFFSMDWVADFLARYPR 121 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARKL-GASHRGLLASPSYLARRG 176 VQLEF+LSDD DLIA+ +D+AFR G L DS V R+L SH ++ASP+Y+A G Sbjct: 122 VQLEFVLSDDHADLIADRLDIAFRGGPLQDSGYVGRQLIDESHDTMVASPTYIAAYG 178