BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0224.p (176 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752236.1| transcription elongation factor [Collimonas ... 290 7e-77 ref|YP_003775532.1| transcription elongation/transcript cleavage... 287 5e-76 ref|ZP_08272963.1| Transcription elongation factor GreB [Oxaloba... 283 5e-75 ref|ZP_04577201.1| transcription elongation factor and transcrip... 267 5e-70 ref|ZP_04579337.1| transcription elongation factor and transcrip... 261 2e-68 >ref|YP_004752236.1| transcription elongation factor [Collimonas fungivorans Ter331] gb|AEK61413.1| Transcription elongation factor [Collimonas fungivorans Ter331] Length = 188 Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 139/169 (82%), Positives = 153/169 (90%), Gaps = 1/169 (0%) Query: 8 MNKAFVKESDGDDDD-ELALPAIPAGTRNYMTPAGHKRIKDELLHLIDVDRPEVVRIVHW 66 MNKAFVKES+GDDDD E LPAIP GT+NYMTP G++R+KDELL LIDVDRPEVVRIV W Sbjct: 4 MNKAFVKESEGDDDDLEFGLPAIPPGTKNYMTPEGYQRMKDELLRLIDVDRPEVVRIVSW 63 Query: 67 AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDIAEVVDPTIHHGNDQIFFGATVTYE 126 AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLD+AEVVDP++HHG DQ+FFGATV+Y+ Sbjct: 64 AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDLAEVVDPSVHHGRDQVFFGATVSYQ 123 Query: 127 NQDGIAHTVTIVGIDELDPLNGKISWISPVARTLTKAREGDEVTLQTPS 175 N G HTVTIVGIDELDPL+GKISWISPVAR LTKA EG+ VTL TP+ Sbjct: 124 NHAGEEHTVTIVGIDELDPLHGKISWISPVARALTKAHEGESVTLMTPA 172 >ref|YP_003775532.1| transcription elongation/transcript cleavage factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ63624.1| transcription elongation/transcript cleavage factor protein [Herbaspirillum seropedicae SmR1] Length = 185 Score = 287 bits (734), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/169 (85%), Positives = 159/169 (94%), Gaps = 1/169 (0%) Query: 8 MNKAFVKESDGDDDDE-LALPAIPAGTRNYMTPAGHKRIKDELLHLIDVDRPEVVRIVHW 66 MNKAFVKESDGDDDDE +ALP++PAG++NYMTP GH+RIKDELLHLID +RPEVVR+V W Sbjct: 1 MNKAFVKESDGDDDDEDIALPSVPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSW 60 Query: 67 AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDIAEVVDPTIHHGNDQIFFGATVTYE 126 AASNGDRSENGDY+YGK+RLREIDRRIRFLTKRLD AEVVDP++HHG+DQIFFGATVTYE Sbjct: 61 AASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYE 120 Query: 127 NQDGIAHTVTIVGIDELDPLNGKISWISPVARTLTKAREGDEVTLQTPS 175 NQ G AHTVTIVGIDELDPL G+ISWISPVAR LTKAREGDEV LQTP+ Sbjct: 121 NQRGEAHTVTIVGIDELDPLKGRISWISPVARALTKAREGDEVVLQTPA 169 >ref|ZP_08272963.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium IMCC9480] gb|EGF33585.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 142/169 (84%), Positives = 155/169 (91%), Gaps = 1/169 (0%) Query: 8 MNKAFVKESDGDDDD-ELALPAIPAGTRNYMTPAGHKRIKDELLHLIDVDRPEVVRIVHW 66 MNKAFVKESD DDDD ELALP IPAGTRNYMTPAG +R+++ELLHLIDVDRPEVV IVHW Sbjct: 1 MNKAFVKESDNDDDDDELALPEIPAGTRNYMTPAGFQRMREELLHLIDVDRPEVVHIVHW 60 Query: 67 AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDIAEVVDPTIHHGNDQIFFGATVTYE 126 AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLD+AEVVDPTIHHGN+Q+FFGATV YE Sbjct: 61 AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDVAEVVDPTIHHGNEQVFFGATVRYE 120 Query: 127 NQDGIAHTVTIVGIDELDPLNGKISWISPVARTLTKAREGDEVTLQTPS 175 N G H +TIVGIDELDPL+GKISWISPVAR +TK+R GD +TL+TPS Sbjct: 121 NSAGEQHVITIVGIDELDPLHGKISWISPVARAITKSRVGDTITLKTPS 169 >ref|ZP_04577201.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes HOxBLS] gb|EEO28163.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes HOxBLS] Length = 184 Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 146/168 (86%) Query: 8 MNKAFVKESDGDDDDELALPAIPAGTRNYMTPAGHKRIKDELLHLIDVDRPEVVRIVHWA 67 MNKAFVKE+D DD+ E A+PA+PAG +NY+TPAG K++KDELL LID +RP+VV+ V WA Sbjct: 1 MNKAFVKETDNDDELEPAIPALPAGFKNYITPAGLKKLKDELLELIDTERPQVVQTVSWA 60 Query: 68 ASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDIAEVVDPTIHHGNDQIFFGATVTYEN 127 ASNGDRSENGDYIYGKRRLREIDRRIRFL KR++ AE DP++H+GNDQIFFGATVTYE Sbjct: 61 ASNGDRSENGDYIYGKRRLREIDRRIRFLIKRIEAAEEFDPSVHYGNDQIFFGATVTYER 120 Query: 128 QDGIAHTVTIVGIDELDPLNGKISWISPVARTLTKAREGDEVTLQTPS 175 Q+G +TVTIVGIDE DPL GKISWISP+ARTL KA EGD VTL TP+ Sbjct: 121 QNGEENTVTIVGIDEFDPLQGKISWISPMARTLIKAHEGDTVTLHTPA 168 >ref|ZP_04579337.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes OXCC13] gb|EEO30310.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes OXCC13] Length = 184 Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 124/168 (73%), Positives = 144/168 (85%) Query: 8 MNKAFVKESDGDDDDELALPAIPAGTRNYMTPAGHKRIKDELLHLIDVDRPEVVRIVHWA 67 MNKAF KESD DD+ E +P +PAG +NY+TPAG K +KDELL LID +RP+VV+IV WA Sbjct: 1 MNKAFTKESDNDDELEPNVPVLPAGFKNYITPAGLKSLKDELLSLIDKERPQVVQIVSWA 60 Query: 68 ASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDIAEVVDPTIHHGNDQIFFGATVTYEN 127 ASNGDRSENGDYIYGKRRLREIDRRIRFL KR++ AE DP+IH+GNDQIFFGATVTYE Sbjct: 61 ASNGDRSENGDYIYGKRRLREIDRRIRFLIKRIEAAEEFDPSIHYGNDQIFFGATVTYER 120 Query: 128 QDGIAHTVTIVGIDELDPLNGKISWISPVARTLTKAREGDEVTLQTPS 175 +DG +T+TIVGIDE DPL G+ISWISP+A+TL KAREGD VTL TP+ Sbjct: 121 EDGEENTITIVGIDEFDPLEGRISWISPMAKTLIKAREGDTVTLHTPA 168