BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0217.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775526.1| molybdenum transport regulator protein [Herb...   171   3e-41
ref|YP_004752220.1| putative transcriptional regulator [Collimon...   142   1e-32
ref|YP_004784615.1| putative ModE family transcriptional regulat...   125   3e-27
ref|ZP_05293259.1| hypothetical protein ACA_0746 [Acidithiobacil...   123   9e-27
ref|YP_002219328.1| putative ModE family transcriptional regulat...   121   4e-26

>ref|YP_003775526.1| molybdenum transport regulator protein [Herbaspirillum seropedicae
           SmR1]
 gb|ABS11245.1| ModE2 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63618.1| molybdenum transport regulator protein [Herbaspirillum seropedicae
           SmR1]
          Length = 123

 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 97/113 (85%)

Query: 1   MTNSKTVRLRVMQGDTIAFGPGKAALLLAIDRNGSISGAAREMEMSYRRAWLLVEEMNRC 60
           M +SKT+R+RVMQG+TIAFGPGKA LL AI R GSISGAAREMEMSYRRAWLLVEEMNRC
Sbjct: 1   MNDSKTLRVRVMQGETIAFGPGKADLLQAIGRTGSISGAAREMEMSYRRAWLLVEEMNRC 60

Query: 61  FNQPLVATATGGAKGGGASITELAREVVACYQRMQKKADAAIEKDMQHLQSLI 113
           F  PLV TATGG++GGGA++T L +EV+  Y+RMQKKA A+I  D++HL +L+
Sbjct: 61  FASPLVTTATGGSRGGGAAVTALGQEVLTRYRRMQKKAAASIAADLRHLHTLM 113


>ref|YP_004752220.1| putative transcriptional regulator [Collimonas fungivorans Ter331]
 gb|AEK61397.1| putative transcriptional regulator, ModE family [Collimonas
           fungivorans Ter331]
          Length = 122

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 94/117 (80%)

Query: 1   MTNSKTVRLRVMQGDTIAFGPGKAALLLAIDRNGSISGAAREMEMSYRRAWLLVEEMNRC 60
           M NSK+VRLRV+QGD IAFGPGKAALLLAI ++GSIS AAR + MSYRRAWLLVE MN+C
Sbjct: 1   MANSKSVRLRVLQGDAIAFGPGKAALLLAIHQSGSISAAARSLGMSYRRAWLLVEAMNQC 60

Query: 61  FNQPLVATATGGAKGGGASITELAREVVACYQRMQKKADAAIEKDMQHLQSLIVGKD 117
           F  PLVATATGGAKGGGA +T +  E++A YQ MQ KA+AA+ KDM +  +L+   D
Sbjct: 61  FKSPLVATATGGAKGGGAQVTPIGHEILARYQAMQNKAEAAVAKDMAYFDALMAAPD 117


>ref|YP_004784615.1| putative ModE family transcriptional regulator [Acidithiobacillus
           ferrivorans SS3]
 gb|AEM48289.1| putative transcriptional regulator, ModE family [Acidithiobacillus
           ferrivorans SS3]
          Length = 123

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 77/113 (68%)

Query: 1   MTNSKTVRLRVMQGDTIAFGPGKAALLLAIDRNGSISGAAREMEMSYRRAWLLVEEMNRC 60
           MT+    RLR++  + IA GPGKA LL  I   GSIS AAR M MSYRRAWLLV+ MN C
Sbjct: 1   MTDHLQPRLRILLAEAIAVGPGKAELLRHIREKGSISAAARAMSMSYRRAWLLVDTMNHC 60

Query: 61  FNQPLVATATGGAKGGGASITELAREVVACYQRMQKKADAAIEKDMQHLQSLI 113
           F  PLV TATGG+ GGGA +TE+  E++  Y+ M+ KA+AA+  D+   + L+
Sbjct: 61  FLAPLVGTATGGSHGGGAHLTEMGEEILKRYEAMESKANAALAPDIAEFRKLM 113


>ref|ZP_05293259.1| hypothetical protein ACA_0746 [Acidithiobacillus caldus ATCC 51756]
 ref|YP_004748668.1| hypothetical protein Atc_1319 [Acidithiobacillus caldus SM-1]
 gb|EET26836.1| hypothetical protein ACA_0746 [Acidithiobacillus caldus ATCC 51756]
 gb|AEK57968.1| conserved hypothetical protein [Acidithiobacillus caldus SM-1]
          Length = 133

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 80/112 (71%)

Query: 2   TNSKTVRLRVMQGDTIAFGPGKAALLLAIDRNGSISGAAREMEMSYRRAWLLVEEMNRCF 61
           ++S   RLR++  + IA GPGKA LL AI  +GSIS AAR M MSYRRAWLLV+ MNR F
Sbjct: 7   SHSNAPRLRILLAEAIAMGPGKAELLRAIREHGSISAAARAMGMSYRRAWLLVDTMNRSF 66

Query: 62  NQPLVATATGGAKGGGASITELAREVVACYQRMQKKADAAIEKDMQHLQSLI 113
            +PLV TATGG++GGGA +T L  +V+  Y  M++KA A +++DM   + L+
Sbjct: 67  IEPLVGTATGGSRGGGARLTPLGMDVLRRYAAMEQKAQAVLQEDMDDFRRLL 118


>ref|YP_002219328.1| putative ModE family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 ref|YP_002425211.1| helix-turn-helix domain protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gb|ACH83121.1| putative transcriptional regulator, ModE family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gb|ACK78950.1| helix-turn-helix domain protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gb|EGQ63483.1| helix-turn-helix domain protein [Acidithiobacillus sp. GGI-221]
          Length = 123

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 76/113 (67%)

Query: 1   MTNSKTVRLRVMQGDTIAFGPGKAALLLAIDRNGSISGAAREMEMSYRRAWLLVEEMNRC 60
           MT+    RLRV+  + IA GPGKA LL  I   GSIS AAR M MSYRRAWLLV+ MN C
Sbjct: 1   MTDHLQPRLRVLLAEAIAIGPGKAELLRHIREEGSISAAARAMNMSYRRAWLLVDTMNHC 60

Query: 61  FNQPLVATATGGAKGGGASITELAREVVACYQRMQKKADAAIEKDMQHLQSLI 113
           F  P+V+TATGG+ GGGA +TE+  E++  Y+ M+ KA+  +  D+   + L+
Sbjct: 61  FLAPVVSTATGGSHGGGAHLTEMGEEILTRYEAMEAKANLTLAPDIAEFRKLM 113