BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0179.p (446 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752454.1| ferredoxin [Collimonas fungivorans Ter331] >... 731 0.0 ref|YP_003776123.1| polyferredoxin protein [Herbaspirillum serop... 728 0.0 ref|YP_001858179.1| putative nitrogen fixation protein VnfA [Bur... 654 0.0 ref|ZP_02887724.1| putative nitrogen fixation protein VnfA [Burk... 654 0.0 ref|YP_003907510.1| putative nitrogen fixation protein VnfA [Bur... 647 0.0 >ref|YP_004752454.1| ferredoxin [Collimonas fungivorans Ter331] gb|AEK61631.1| Ferredoxin [Collimonas fungivorans Ter331] Length = 498 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/450 (80%), Positives = 390/450 (86%), Gaps = 4/450 (0%) Query: 1 MRRNGALIRGIQWIVVLVYAVLILVPIFLPLPDETAHIWSNLTLIAQFCFWGIWWPFVLV 60 MR + LIR +QW +VLVY LILVPIFLPLPDETAHIWSNLTLIAQF FWGIWWPFVL+ Sbjct: 49 MRDHAKLIRWVQWGIVLVYGFLILVPIFLPLPDETAHIWSNLTLIAQFAFWGIWWPFVLI 108 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKFGKNRAIPRWMRWGGWPFFAFALTTIYGQMVSVYQ 120 SMVLMGRVWCGVLCPEGALTEFAS+ G +AIP WMRWGGWPF AFALTTIYGQMVSVYQ Sbjct: 109 SMVLMGRVWCGVLCPEGALTEFASRHGLGKAIPHWMRWGGWPFVAFALTTIYGQMVSVYQ 168 Query: 121 YPKAVLLVLGGSTLGAMIVGYLYGREKRVWCKYLCPVNGVFGLLAKLAPFHYKVNEDAWR 180 YPKAVLLVLGGST GA++VGYLYGR+KRVWCKYLCPVNGVFGLLAKLAPFHYKVNE AWR Sbjct: 169 YPKAVLLVLGGSTAGAIVVGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPFHYKVNETAWR 228 Query: 181 ASYDTH----GKKTIAVNCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPTVEIVK 236 ASY TH G+ I VNCAPLVPLR MKGA+DCHMCGRCSGHRDAI LTWRAP EIV+ Sbjct: 229 ASYGTHSHTQGRTVIPVNCAPLVPLRAMKGAADCHMCGRCSGHRDAIELTWRAPAEEIVR 288 Query: 237 VGRTSNNLWESSLALYGLFGIAIGAFHWSASPWFVEAKQFIATWLIDRDIMWPFATNAPW 296 G NNLWES+LALYGL GIAIGAFHWSASPWFV+ KQ IATWLIDRDIMWPF T+APW Sbjct: 289 HGEQHNNLWESALALYGLMGIAIGAFHWSASPWFVQVKQAIATWLIDRDIMWPFDTHAPW 348 Query: 297 WLLTNYPQQSDVFSWLDGGLVVAYILATAAVLGTALTALFALSNLVLGSWSRSRFNHLVQ 356 W+ TNYP Q+DVFSWLDGGLV+AYIL T VLGTALT LFALS+ VLG R RFNHLVQ Sbjct: 349 WVFTNYPAQNDVFSWLDGGLVIAYILTTGLVLGTALTLLFALSSRVLGGCDRKRFNHLVQ 408 Query: 357 ATIPLAGCGVFVGLSATTISLLRAEHWPVDWANDVRAALLTVMTLWSVLLAWKVIGQHTE 416 +TIPLAGCGVFVGLSATTISLLR EH PV WAND+RA LL TLWSV LAW+V G++T Sbjct: 409 STIPLAGCGVFVGLSATTISLLRGEHLPVFWANDLRAILLIATTLWSVWLAWRVTGRYTS 468 Query: 417 AFSRRVLAMLPVIGALALVNYAWLLMFWIW 446 A +RR+L+M PVI LALVN+AWLLMFW+W Sbjct: 469 APARRLLSMAPVIAGLALVNFAWLLMFWLW 498 >ref|YP_003776123.1| polyferredoxin protein [Herbaspirillum seropedicae SmR1] gb|ADJ64215.1| polyferredoxin protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/446 (79%), Positives = 390/446 (87%), Gaps = 1/446 (0%) Query: 1 MRRNGALIRGIQWIVVLVYAVLILVPIFLPLPDETAHIWSNLTLIAQFCFWGIWWPFVLV 60 MRR+GA IR +QWIVV VYA+LILVP+FLPLPDETAH+WSNLTLIAQF FWGIWWPFVLV Sbjct: 1 MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKFGKNRAIPRWMRWGGWPFFAFALTTIYGQMVSVYQ 120 SMVLMGRVWCGVLCPEGALTEFASK G+ RAIPRW+RWGGWPF AFALTTIYGQMVSVYQ Sbjct: 61 SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120 Query: 121 YPKAVLLVLGGSTLGAMIVGYLYGREKRVWCKYLCPVNGVFGLLAKLAPFHYKVNEDAWR 180 YPKAVLLVLGGST+GA+I+GYLYGR+KRVWCKYLCPVNGVFGLLAKLAP HYKVNEDAWR Sbjct: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180 Query: 181 ASYDTHGKKTIAVNCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPTVEIVKVGRT 240 ASY K I +NCAPLVPLRNMKGASDCHMCGRCSGHRDAIALT+R P VE+V+ G+T Sbjct: 181 ASYHPE-HKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKT 239 Query: 241 SNNLWESSLALYGLFGIAIGAFHWSASPWFVEAKQFIATWLIDRDIMWPFATNAPWWLLT 300 NNLWES+L LYGL GIAIGAFHW+ SPWF+ KQ IATWLIDRDIMWPF T APWWLLT Sbjct: 240 ENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWLLT 299 Query: 301 NYPQQSDVFSWLDGGLVVAYILATAAVLGTALTALFALSNLVLGSWSRSRFNHLVQATIP 360 NYPQQSDVF+WLDG +VV YILAT VLG+ + +FAL+ +LG W RFNHLVQA IP Sbjct: 300 NYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQALIP 359 Query: 361 LAGCGVFVGLSATTISLLRAEHWPVDWANDVRAALLTVMTLWSVLLAWKVIGQHTEAFSR 420 LAGCGVF+GLSATTISLLRAEH PV WANDVRAALL MTLWS+ L WKV+ +H +++ Sbjct: 360 LAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHWAQ 419 Query: 421 RVLAMLPVIGALALVNYAWLLMFWIW 446 + LAMLP++G LALVN AW LMFW W Sbjct: 420 QCLAMLPLMGGLALVNTAWWLMFWGW 445 >ref|YP_001858179.1| putative nitrogen fixation protein VnfA [Burkholderia phymatum STM815] gb|ACC71133.1| putative nitrogen fixation protein VnfA [Burkholderia phymatum STM815] Length = 469 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/448 (70%), Positives = 370/448 (82%), Gaps = 2/448 (0%) Query: 1 MRRNGALIRGIQWIVVLVYAVLILVPIFLPLPDETAHIWSNLTLIAQFCFWGIWWPFVLV 60 M+R+GA IR IQW+VV VYA LILVP F LP +TAH+WSNLTL AQF FWGIWWPFVL+ Sbjct: 19 MQRHGAAIRCIQWVVVAVYAFLILVPAFTELPGDTAHLWSNLTLAAQFVFWGIWWPFVLL 78 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKFGKNRAIPRWMRWGGWPFFAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASK+G+ AIPRWMRWGGWPF AF LTTIYGQMVSVYQ Sbjct: 79 SMVMLGRVWCGVLCPEGALAEFASKYGRGWAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQ 138 Query: 121 YPKAVLLVLGGSTLGAMIVGYLYGREKRVWCKYLCPVNGVFGLLAKLAPFHYKVNEDAWR 180 YPKAVLLVLGGST AM++G LYGREKRVWCKYLCPVNGVF LLA+LAPFHYKV+EDAWR Sbjct: 139 YPKAVLLVLGGSTFAAMVIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 198 Query: 181 ASYDT--HGKKTIAVNCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPTVEIVKVG 238 SY HG + I +NCAPLVPLRNMKGAS CHMCGRCSGHRDAIALTWRAP+ E+V +G Sbjct: 199 RSYKEGEHGHRVIPINCAPLVPLRNMKGASSCHMCGRCSGHRDAIALTWRAPSSEVVNLG 258 Query: 239 RTSNNLWESSLALYGLFGIAIGAFHWSASPWFVEAKQFIATWLIDRDIMWPFATNAPWWL 298 + W+++L LYGL GIAIGAFHW+ SPWF++ KQ +ATWL+DRDIMWP TNAPW+L Sbjct: 259 DRQASAWDTALILYGLLGIAIGAFHWTGSPWFIDIKQSLATWLVDRDIMWPLDTNAPWFL 318 Query: 299 LTNYPQQSDVFSWLDGGLVVAYILATAAVLGTALTALFALSNLVLGSWSRSRFNHLVQAT 358 T+YP+Q+DVFSWLDG +++AYILATAAV GTAL AL A + VLG +S +R +HL QA Sbjct: 319 FTHYPEQNDVFSWLDGTMIIAYILATAAVYGTALFALLAGATRVLGRFSMTRLHHLAQAL 378 Query: 359 IPLAGCGVFVGLSATTISLLRAEHWPVDWANDVRAALLTVMTLWSVLLAWKVIGQHTEAF 418 IP+AG GVF+GLSATT+SLL+AEH P+DWA+DVR A+L + WS LAW + ++T Sbjct: 379 IPIAGTGVFLGLSATTLSLLKAEHVPLDWASDVRIAILVIANTWSAWLAWLITRRYTARV 438 Query: 419 SRRVLAMLPVIGALALVNYAWLLMFWIW 446 RR L+M+ + ALA+V+ AW LMFW W Sbjct: 439 LRRTLSMVWFMAALAVVDSAWWLMFWYW 466 >ref|ZP_02887724.1| putative nitrogen fixation protein VnfA [Burkholderia graminis C4D1M] gb|EDT06678.1| putative nitrogen fixation protein VnfA [Burkholderia graminis C4D1M] Length = 468 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/448 (69%), Positives = 371/448 (82%), Gaps = 2/448 (0%) Query: 1 MRRNGALIRGIQWIVVLVYAVLILVPIFLPLPDETAHIWSNLTLIAQFCFWGIWWPFVLV 60 M+R+G++IRGIQW+VV VYA+LI+VP +PLPD++AH+W+NLTL AQF FWGIWWPFVL+ Sbjct: 18 MQRHGSVIRGIQWVVVAVYALLIVVPAVMPLPDDSAHLWNNLTLAAQFVFWGIWWPFVLL 77 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKFGKNRAIPRWMRWGGWPFFAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASK G+ +AIP WMRWGGWPF AF +TTIYGQMVSVYQ Sbjct: 78 SMVMLGRVWCGVLCPEGALAEFASKHGRGKAIPHWMRWGGWPFVAFGITTIYGQMVSVYQ 137 Query: 121 YPKAVLLVLGGSTLGAMIVGYLYGREKRVWCKYLCPVNGVFGLLAKLAPFHYKVNEDAWR 180 YPKAVLLVLGGSTL A+++G LYGREKRVWCKYLCPVNGVF LLA+LAPFHYKV+EDAWR Sbjct: 138 YPKAVLLVLGGSTLAAIVIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 197 Query: 181 ASYDT--HGKKTIAVNCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPTVEIVKVG 238 SY HG + I +NCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAP+ E+V++G Sbjct: 198 RSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPSSEVVQLG 257 Query: 239 RTSNNLWESSLALYGLFGIAIGAFHWSASPWFVEAKQFIATWLIDRDIMWPFATNAPWWL 298 N+W+++L LYGL GIAIGAFHW+AS WF++ K F ATWL+DRDI WP TNAPW+L Sbjct: 258 DKQANVWDTALILYGLLGIAIGAFHWTASRWFIDLKMFFATWLVDRDITWPLQTNAPWFL 317 Query: 299 LTNYPQQSDVFSWLDGGLVVAYILATAAVLGTALTALFALSNLVLGSWSRSRFNHLVQAT 358 T+YP+Q+DVFSWLDG +V+ YILATA V GTAL L + LG +S R +HL Q Sbjct: 318 FTHYPEQNDVFSWLDGTMVIGYILATALVYGTALLVLMMGATRTLGRFSSVRLHHLTQGL 377 Query: 359 IPLAGCGVFVGLSATTISLLRAEHWPVDWANDVRAALLTVMTLWSVLLAWKVIGQHTEAF 418 IPLAG GVF+GLSATT+SLLRAEH P+ WA+DVR A+L + +WS LAW V +++E F Sbjct: 378 IPLAGAGVFLGLSATTLSLLRAEHVPLWWASDVRIAILAIANVWSAWLAWLVTRRYSEHF 437 Query: 419 SRRVLAMLPVIGALALVNYAWLLMFWIW 446 RR LAML I ALA+V+ AW LMFW W Sbjct: 438 VRRGLAMLWFIAALAVVDSAWWLMFWGW 465 >ref|YP_003907510.1| putative nitrogen fixation protein VnfA [Burkholderia sp. CCGE1003] gb|ADN58219.1| putative nitrogen fixation protein VnfA [Burkholderia sp. CCGE1003] Length = 468 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/448 (69%), Positives = 369/448 (82%), Gaps = 2/448 (0%) Query: 1 MRRNGALIRGIQWIVVLVYAVLILVPIFLPLPDETAHIWSNLTLIAQFCFWGIWWPFVLV 60 M+R+G++IRGIQW+VV VYA+LI+VP +PLPD++AH+W+NLTL AQF FWGIWWPFVL+ Sbjct: 18 MQRHGSVIRGIQWVVVAVYALLIIVPAVMPLPDDSAHLWNNLTLAAQFVFWGIWWPFVLL 77 Query: 61 SMVLMGRVWCGVLCPEGALTEFASKFGKNRAIPRWMRWGGWPFFAFALTTIYGQMVSVYQ 120 SMV++GRVWCGVLCPEGAL EFASK G+ +AIP WMRWGGWPF AF +TTIYGQMVSVYQ Sbjct: 78 SMVMLGRVWCGVLCPEGALAEFASKHGRGKAIPHWMRWGGWPFVAFGITTIYGQMVSVYQ 137 Query: 121 YPKAVLLVLGGSTLGAMIVGYLYGREKRVWCKYLCPVNGVFGLLAKLAPFHYKVNEDAWR 180 YPKAVLLVLGGSTL A+++G LYGREKRVWCKYLCPVNGVF LLA+LAPFHYKV+EDAWR Sbjct: 138 YPKAVLLVLGGSTLAAIVIGLLYGREKRVWCKYLCPVNGVFSLLARLAPFHYKVDEDAWR 197 Query: 181 ASYDT--HGKKTIAVNCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPTVEIVKVG 238 SY HG + I +NCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAP+ E+V++G Sbjct: 198 RSYKNGEHGHRVIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPSSEVVQLG 257 Query: 239 RTSNNLWESSLALYGLFGIAIGAFHWSASPWFVEAKQFIATWLIDRDIMWPFATNAPWWL 298 ++W+++L LYGL GIAIGAFHW+AS WF++ K F ATWL+D DI WP TNAPW+L Sbjct: 258 DKHASVWDTALILYGLLGIAIGAFHWTASRWFIDLKMFFATWLVDHDIAWPLDTNAPWFL 317 Query: 299 LTNYPQQSDVFSWLDGGLVVAYILATAAVLGTALTALFALSNLVLGSWSRSRFNHLVQAT 358 T+YP+Q+DVFSWLDG +V+ YILATA V GT L L + +LG +S R +HL Q Sbjct: 318 FTHYPEQNDVFSWLDGTMVIGYILATALVYGTVLLILMTGATRMLGRFSSVRLHHLTQGL 377 Query: 359 IPLAGCGVFVGLSATTISLLRAEHWPVDWANDVRAALLTVMTLWSVLLAWKVIGQHTEAF 418 IPLAG GVF+GLSATT+SLLRAEH P+ WA+DVR A+L + LWS LAW V ++TE F Sbjct: 378 IPLAGAGVFLGLSATTLSLLRAEHVPLWWASDVRIAILAIANLWSAWLAWLVTRRYTERF 437 Query: 419 SRRVLAMLPVIGALALVNYAWLLMFWIW 446 +R LAML ALA+V+ AW LMFW W Sbjct: 438 VQRALAMLWFAAALAVVDSAWWLMFWGW 465