BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0170.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776169.1| response regulator containing a CheY-like re... 384 e-105 ref|YP_001353142.1| LuxR family DNA-binding response regulator [... 350 6e-95 ref|YP_001100139.1| LuxR family transcriptional regulator [Hermi... 345 4e-93 ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxal... 332 2e-89 ref|ZP_08503346.1| Response regulator receiver, LuxR family [Met... 283 1e-74 >ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64261.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/215 (86%), Positives = 201/215 (93%) Query: 2 KKNSSAIKVAIADDHAIVREGLRQICSGTKDIIVVGNAENGLETIKLTRLGNCDVLLLDI 61 KK ++AIKV IADDHAIVREGLRQIC+G+KDI+V GNA NGLE IKL R GN DVLLLDI Sbjct: 3 KKVTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDI 62 Query: 62 ILPDRTGIDVLKQIKKEIPKLPVLMLSIHREDQYAIRALKAGAAGFLNKQAAPAELINAI 121 +LPDR GID+LKQI+KE P+LPVL+LSIHREDQYAIRALKAGAAGFLNKQAAPAEL+ AI Sbjct: 63 VLPDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAI 122 Query: 122 RQVAAGRKYISPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELLL 181 RQ A+GRKY+SPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAEL L Sbjct: 123 RQAASGRKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTL 182 Query: 182 SVKTISMYRSRVLAKMKLRHNAELTHYALKNNLVE 216 SVKTISMYRSRVL+KMK+RHNAELTHYALKN LVE Sbjct: 183 SVKTISMYRSRVLSKMKMRHNAELTHYALKNALVE 217 >ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gb|ABR89925.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 215 Score = 350 bits (899), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 168/209 (80%), Positives = 192/209 (91%) Query: 8 IKVAIADDHAIVREGLRQICSGTKDIIVVGNAENGLETIKLTRLGNCDVLLLDIILPDRT 67 IKV IADDHAIVREGL+QI + TKDI+V G+AENG+E IKL+R G C VLLLDI +PDR+ Sbjct: 7 IKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISMPDRS 66 Query: 68 GIDVLKQIKKEIPKLPVLMLSIHREDQYAIRALKAGAAGFLNKQAAPAELINAIRQVAAG 127 GI+VLKQ+KKE PK+ VLMLS+HREDQYAIR+LKAGA+G+LNKQ+APAEL+NAIRQVAAG Sbjct: 67 GIEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVNAIRQVAAG 126 Query: 128 RKYISPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELLLSVKTIS 187 RKYIS +LAQELANQI DHETPLHETLSDREYQT+ MIASGKTVSDIA EL+LSVKTIS Sbjct: 127 RKYISAALAQELANQISDDHETPLHETLSDREYQTLTMIASGKTVSDIANELVLSVKTIS 186 Query: 188 MYRSRVLAKMKLRHNAELTHYALKNNLVE 216 MYRSR+L KMKLRHNAELTHYA+KN+LV+ Sbjct: 187 MYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL62015.1| Response regulator receiver, LuxR family [Herminiimonas arsenicoxydans] Length = 215 Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 165/211 (78%), Positives = 193/211 (91%) Query: 6 SAIKVAIADDHAIVREGLRQICSGTKDIIVVGNAENGLETIKLTRLGNCDVLLLDIILPD 65 +AIKV IADDHAIVREGL+QI + T+DI+V G+AENG E I+L+R G C+VLLLDI +PD Sbjct: 5 NAIKVLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDISMPD 64 Query: 66 RTGIDVLKQIKKEIPKLPVLMLSIHREDQYAIRALKAGAAGFLNKQAAPAELINAIRQVA 125 R+GI+VLKQ++KE PK+ +LMLS+HREDQYAIR+LKAGAAG+LNKQ+APAEL+ AIRQVA Sbjct: 65 RSGIEVLKQVRKESPKIAILMLSMHREDQYAIRSLKAGAAGYLNKQSAPAELVTAIRQVA 124 Query: 126 AGRKYISPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELLLSVKT 185 AGRKYIS LAQELANQI +HETPLHETLSDREYQT+ MIASGKTVSDIAAEL+LSVKT Sbjct: 125 AGRKYISAELAQELANQINDNHETPLHETLSDREYQTLTMIASGKTVSDIAAELVLSVKT 184 Query: 186 ISMYRSRVLAKMKLRHNAELTHYALKNNLVE 216 ISMYRSR+L KMKLRHNAELTHYA+KN+LV+ Sbjct: 185 ISMYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium IMCC9480] gb|EGF32926.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium IMCC9480] Length = 215 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 159/209 (76%), Positives = 186/209 (88%) Query: 8 IKVAIADDHAIVREGLRQICSGTKDIIVVGNAENGLETIKLTRLGNCDVLLLDIILPDRT 67 I+V IADDHAIVREGL+QI + TKDI+V G AENGL+ +KL R G VLLLDI +PDR+ Sbjct: 7 IRVLIADDHAIVREGLKQILADTKDIVVAGAAENGLDAVKLARAGEAHVLLLDISMPDRS 66 Query: 68 GIDVLKQIKKEIPKLPVLMLSIHREDQYAIRALKAGAAGFLNKQAAPAELINAIRQVAAG 127 GI+VLKQI+KE P + VLMLS+HREDQYAIR+LKAGA+G+LNKQ+APAEL+NAIRQVA+G Sbjct: 67 GIEVLKQIRKECPAIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVNAIRQVASG 126 Query: 128 RKYISPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELLLSVKTIS 187 RKYIS LAQELANQ+G D E P HETLSDREYQT+ MIASGKTVSDIA+EL+LSVKTIS Sbjct: 127 RKYISTELAQELANQVGDDREIPPHETLSDREYQTLTMIASGKTVSDIASELVLSVKTIS 186 Query: 188 MYRSRVLAKMKLRHNAELTHYALKNNLVE 216 MYRSR+L KMKLRHNAELTHYA++N+LV+ Sbjct: 187 MYRSRLLQKMKLRHNAELTHYAIRNHLVD 215 >ref|ZP_08503346.1| Response regulator receiver, LuxR family [Methyloversatilis universalis FAM5] gb|EGK73169.1| Response regulator receiver, LuxR family [Methyloversatilis universalis FAM5] Length = 216 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 136/215 (63%), Positives = 175/215 (81%), Gaps = 4/215 (1%) Query: 6 SAIKVAIADDHAIVREGLRQICSGTKDIIVVGNAENGLETIKLTRLGN----CDVLLLDI 61 S+I++ IADDHAIVR GLRQI S + D++V G AENG+E + R GN D++L+D+ Sbjct: 2 SSIRILIADDHAIVRSGLRQILSDSPDLVVTGEAENGVEAMHKLRDGNGNASFDLVLMDV 61 Query: 62 ILPDRTGIDVLKQIKKEIPKLPVLMLSIHREDQYAIRALKAGAAGFLNKQAAPAELINAI 121 +PDR GID LK ++KE PKLPVL+LS+H E+QYAIRALKAGAAG+L KQ+AP +L+NAI Sbjct: 62 SMPDRNGIDTLKLVRKEYPKLPVLVLSMHPEEQYAIRALKAGAAGYLTKQSAPDQLVNAI 121 Query: 122 RQVAAGRKYISPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELLL 181 RQVA+G+KY+SPSLA ELAN I D E P HE LSDREYQT+VMIASG+T++ I EL L Sbjct: 122 RQVASGKKYVSPSLAMELANAITDDSERPPHEKLSDREYQTLVMIASGRTLTQIGEELNL 181 Query: 182 SVKTISMYRSRVLAKMKLRHNAELTHYALKNNLVE 216 SVKT+S+YR+R+L KM++++NAELTHY LK+ LV+ Sbjct: 182 SVKTVSVYRARLLEKMRMKNNAELTHYGLKHGLVD 216