BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0163.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776174.1| 3-deoxy-D-manno-octulosonic acid (KDO) 8-pho... 380 e-104 ref|YP_002005197.1| 2-dehydro-3-deoxyphosphooctonate aldolase [C... 365 2e-99 ref|YP_583208.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Cupr... 365 2e-99 ref|YP_004684968.1| 2-dehydro-3-deoxyphosphooctonate aldolase Kd... 361 3e-98 ref|YP_725695.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Rals... 361 4e-98 >ref|YP_003776174.1| 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64266.1| 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase protein [Herbaspirillum seropedicae SmR1] Length = 284 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/195 (93%), Positives = 187/195 (95%) Query: 1 MKLCGFDIGLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSS 60 MKLCGFD+GLD PFFLIAGTCVIESEQM LDTAG LKEIT ELGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFDVGLDHPFFLIAGTCVIESEQMALDTAGTLKEITAELGIPFIYKSSFDKANRSS 60 Query: 61 GSSFRGLGMEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFI 120 GSSFRGLGMEKGLEILAKVKK+IGVPVLTDIHEIDEIKPV+ VVDVLQTPAFLCRQTDFI Sbjct: 61 GSSFRGLGMEKGLEILAKVKKEIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM+NVI KARAAAKEAGLP D FMACERGVSFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMVNVIDKARAAAKEAGLPTDQFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPV 195 DMRSLAIMRETGAPV Sbjct: 181 DMRSLAIMRETGAPV 195 >ref|YP_002005197.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Cupriavidus taiwanensis LMG 19424] sp|B3R497.1|KDSA_CUPTR RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase emb|CAQ69130.1| 3-deoxy-D-manno-octulosonic acid 8-P synthetase [Cupriavidus taiwanensis LMG 19424] Length = 289 Score = 365 bits (936), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 176/195 (90%), Positives = 184/195 (94%) Query: 1 MKLCGFDIGLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSS 60 MKLCGF++GLD+PFFLIAG CVIESEQM LDTAG LK ITTELGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFEVGLDKPFFLIAGPCVIESEQMALDTAGELKAITTELGIPFIYKSSFDKANRSS 60 Query: 61 GSSFRGLGMEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFI 120 G SFRGLGMEKGLEILA VK++IGVPVLTDIHEIDEIKPV+ VVDVLQTPAFLCRQTDFI Sbjct: 61 GKSFRGLGMEKGLEILAHVKREIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVI KAR AA+EAGLP+D FMACERGVSFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLPDDVFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPV 195 DMRSLAIMRETGAPV Sbjct: 181 DMRSLAIMRETGAPV 195 >ref|YP_583208.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Cupriavidus metallidurans CH34] gb|ABF07939.1| 3-deoxy-D-manno-octulosonate 8-phosphate synthase [Cupriavidus metallidurans CH34] Length = 289 Score = 365 bits (936), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 177/195 (90%), Positives = 183/195 (93%) Query: 1 MKLCGFDIGLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSS 60 MKLCGFD+GLD+PFFLIAG CVIESEQM LDTAG LK IT ELGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFDVGLDKPFFLIAGPCVIESEQMALDTAGELKAITGELGIPFIYKSSFDKANRSS 60 Query: 61 GSSFRGLGMEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFI 120 G SFRGLGMEKGLEILA VK+QIGVPVLTDIHEIDEIKPV+ VVDVLQTPAFLCRQTDFI Sbjct: 61 GKSFRGLGMEKGLEILATVKRQIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVI KAR AA+EAGLP+D FMACERGVSFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLPDDVFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPV 195 DMRSLAIMRETGAPV Sbjct: 181 DMRSLAIMRETGAPV 195 >ref|YP_004684968.1| 2-dehydro-3-deoxyphosphooctonate aldolase KdsA [Cupriavidus necator N-1] gb|AEI76487.1| 2-dehydro-3-deoxyphosphooctonate aldolase KdsA [Cupriavidus necator N-1] Length = 289 Score = 361 bits (926), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 175/195 (89%), Positives = 182/195 (93%) Query: 1 MKLCGFDIGLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSS 60 MKLCGF+ GLD+PFFLIAG CVIESEQM LDTAG LK IT ELGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFEAGLDKPFFLIAGPCVIESEQMALDTAGELKAITAELGIPFIYKSSFDKANRSS 60 Query: 61 GSSFRGLGMEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFI 120 G SFRGLGMEKGLEILA VK++IGVPVLTDIHEIDEIKPV+ VVDVLQTPAFLCRQTDFI Sbjct: 61 GKSFRGLGMEKGLEILATVKREIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVI KAR AA+EAGLP+D FMACERGVSFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLPDDVFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPV 195 DMRSLAIMRETGAPV Sbjct: 181 DMRSLAIMRETGAPV 195 >ref|YP_725695.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Ralstonia eutropha H16] sp|Q0KCE4.1|KDSA_RALEH RecName: Full=2-dehydro-3-deoxyphosphooctonate aldolase; AltName: Full=3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; AltName: Full=KDO-8-phosphate synthase; Short=KDO 8-P synthase; Short=KDOPS; AltName: Full=Phospho-2-dehydro-3-deoxyoctonate aldolase emb|CAJ92327.1| 2-Dehydro-3-deoxyphosphooctonate aldolase [Ralstonia eutropha H16] Length = 289 Score = 361 bits (926), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 175/195 (89%), Positives = 182/195 (93%) Query: 1 MKLCGFDIGLDQPFFLIAGTCVIESEQMTLDTAGALKEITTELGIPFIYKSSFDKANRSS 60 MKLCGF+ GLD+PFFLIAG CVIESEQM LDTAG LK IT ELGIPFIYKSSFDKANRSS Sbjct: 1 MKLCGFEAGLDKPFFLIAGPCVIESEQMALDTAGELKAITAELGIPFIYKSSFDKANRSS 60 Query: 61 GSSFRGLGMEKGLEILAKVKKQIGVPVLTDIHEIDEIKPVSEVVDVLQTPAFLCRQTDFI 120 G SFRGLGMEKGLEILA VK++IGVPVLTDIHEIDEIKPV+ VVDVLQTPAFLCRQTDFI Sbjct: 61 GKSFRGLGMEKGLEILATVKREIGVPVLTDIHEIDEIKPVAAVVDVLQTPAFLCRQTDFI 120 Query: 121 RACAQSGKPVNIKKGQFLAPHDMINVIAKARAAAKEAGLPEDNFMACERGVSFGYNNLVS 180 RACAQSGKPVNIKKGQFLAPHDM NVI KAR AA+EAGLP+D FMACERGVSFGYNNLVS Sbjct: 121 RACAQSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLPDDVFMACERGVSFGYNNLVS 180 Query: 181 DMRSLAIMRETGAPV 195 DMRSLAIMRETGAPV Sbjct: 181 DMRSLAIMRETGAPV 195