BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0152.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001112705.1| PAS/PAC and GAF sensor-containing diguanylat... 140 2e-31 ref|ZP_08829720.1| NADH-quinone oxidoreductase subunit L [endosy... 138 9e-31 ref|YP_001098955.1| putative signal peptide [Herminiimonas arsen... 138 1e-30 ref|ZP_08815913.1| putative signaling protein [endosymbiont of T... 137 1e-30 ref|YP_003639763.1| diguanylate cyclase/phosphodiesterase with P... 135 1e-29 >ref|YP_001112705.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Desulfotomaculum reducens MI-1] gb|ABO49880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfotomaculum reducens MI-1] Length = 947 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 112/171 (65%), Gaps = 2/171 (1%) Query: 1 VREGLGLQLSEDALVEASRRLAGLMQHDATLARFGDTSFAMVLH-VPEQDQIAMVVQEII 59 V + LG + + L ++R + L++ T+AR G F ++LH + + ++V +II Sbjct: 561 VNDTLGHDIGDQLLKGIAQRFSKLLRKGDTIARIGGDEFTILLHNITRAENASIVADKII 620 Query: 60 DILDLPYHVDGHEGVYLESNIGVTIYPNDGDNGDALLQAAEVAMHRAMENVLERFQFYTP 119 D L P+ + HE ++ ++IG+ +YP+DG + ++LL+ A+ AM++A E +QFYTP Sbjct: 621 DTLANPWIIGNHE-FHITTSIGIALYPDDGTDAESLLKNADAAMYQAKEMGRNNYQFYTP 679 Query: 120 ALNSQVSHRLQMASQLRQAVQKKEMLLHYQPQVSLKSGEIVGVEALLRWQH 170 +N+Q R ++ + LR+A+ +KE +++YQPQV + +G+IVGVEAL+RWQH Sbjct: 680 TMNAQTLRRFELENNLRRALDRKEFVIYYQPQVEIHTGKIVGVEALIRWQH 730 >ref|ZP_08829720.1| NADH-quinone oxidoreductase subunit L [endosymbiont of Riftia pachyptila (vent Ph05)] gb|EGV51342.1| NADH-quinone oxidoreductase subunit L [endosymbiont of Riftia pachyptila (vent Ph05)] Length = 860 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 109/171 (63%), Gaps = 2/171 (1%) Query: 1 VREGLGLQLSEDALVEASRRLAGLMQHDATLARFGDTSFAMVLHVPE-QDQIAMVVQEII 59 + + LG L + L+E ++RL G ++ TLAR G F ++L P +IA + Q +I Sbjct: 474 INDSLGHALGDQLLIEVAQRLNGRIRQQDTLARLGGDEFVVILDQPGGTSEIANLAQVLI 533 Query: 60 DILDLPYHVDGHEGVYLESNIGVTIYPNDGDNGDALLQAAEVAMHRAMENVLERFQFYTP 119 D LD P+ + G E ++ ++IG+++YP+D +ALL+ A++AM+RA E R+ FYTP Sbjct: 534 DALDQPFSLGGKEA-FITTSIGISLYPDDAIEREALLRNADIAMYRAKEEGRHRYAFYTP 592 Query: 120 ALNSQVSHRLQMASQLRQAVQKKEMLLHYQPQVSLKSGEIVGVEALLRWQH 170 ++ V R + SQLR+A++++E L YQPQV SG IVG EALLRW+H Sbjct: 593 SMTRHVQERHTLESQLRRALEREEFELFYQPQVEANSGCIVGSEALLRWRH 643 >ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] emb|CAL60828.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 944 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/173 (41%), Positives = 108/173 (62%), Gaps = 6/173 (3%) Query: 1 VREGLGLQLSEDALVEASRRLAGLMQHDATLARFGDTSFAMVLHVPEQDQIAM---VVQE 57 V + LG Q + L S RL ++ T+AR G F ++L PE+ + ++Q Sbjct: 554 VNDTLGHQAGDILLKAVSARLQAAVRDTDTVARMGGDEFVLIL--PERTDAGLSTGIMQR 611 Query: 58 IIDILDLPYHVDGHEGVYLESNIGVTIYPNDGDNGDALLQAAEVAMHRAMENVLERFQFY 117 I++ + P ++GHE ++ +IGV +YP DG+ + L++ A++AM+RA E FQFY Sbjct: 612 IMESIAQPLTIEGHE-FFISGSIGVAVYPADGETPEELIKHADIAMYRAKETGRNNFQFY 670 Query: 118 TPALNSQVSHRLQMASQLRQAVQKKEMLLHYQPQVSLKSGEIVGVEALLRWQH 170 TPA+N + RL + LR A++++E LHYQPQV L+SG+IVGVEAL+RWQH Sbjct: 671 TPAMNERALERLHIEGDLRNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQH 723 >ref|ZP_08815913.1| putative signaling protein [endosymbiont of Tevnia jerichonana (vent Tica)] gb|EGW55124.1| putative signaling protein [endosymbiont of Tevnia jerichonana (vent Tica)] Length = 748 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 109/171 (63%), Gaps = 2/171 (1%) Query: 1 VREGLGLQLSEDALVEASRRLAGLMQHDATLARFGDTSFAMVLHVPE-QDQIAMVVQEII 59 + + LG L + L+E ++RL G ++ TLAR G F ++L P +IA + Q +I Sbjct: 362 INDSLGHALGDQLLIEVAQRLNGRIRQQDTLARLGGDEFVVILDQPGGTSEIANLAQVLI 421 Query: 60 DILDLPYHVDGHEGVYLESNIGVTIYPNDGDNGDALLQAAEVAMHRAMENVLERFQFYTP 119 D LD P+ + G E ++ ++IG+++YP+D +ALL+ A++AM+RA E R+ FYTP Sbjct: 422 DALDQPFSLGGKEA-FITTSIGISLYPDDAIEREALLRNADIAMYRAKEEGRHRYAFYTP 480 Query: 120 ALNSQVSHRLQMASQLRQAVQKKEMLLHYQPQVSLKSGEIVGVEALLRWQH 170 ++ V R + SQLR+A++++E L YQPQV SG IVG EALLRW+H Sbjct: 481 SMTRHVQERHTLESQLRRALEREEFELFYQPQVEANSGCIVGSEALLRWRH 531 >ref|YP_003639763.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola sp. JR] gb|ADG81862.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola potens JR] Length = 1349 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 110/172 (63%), Gaps = 2/172 (1%) Query: 1 VREGLGLQLSEDALVEASRRLAGLMQHDATLARFGDTSFAMVL-HVPEQDQIAMVVQEII 59 V + LG + + L E +++L+ ++ T+AR G F ++L + + + A + Q+I+ Sbjct: 966 VNDMLGHSIGDRLLQEVAKKLSICLRKGDTIARLGGDEFTLLLPQIKSEKEAAKIAQKIL 1025 Query: 60 DILDLPYHVDGHEGVYLESNIGVTIYPNDGDNGDALLQAAEVAMHRAMENVLERFQFYTP 119 P + GHE Y+ ++IGV +YP+DG+ + L++ A+ AM+RA E +Q YTP Sbjct: 1026 KAFQKPVTLSGHE-FYITASIGVALYPSDGEKAEILMKNADTAMYRAKEQGRNTYQLYTP 1084 Query: 120 ALNSQVSHRLQMASQLRQAVQKKEMLLHYQPQVSLKSGEIVGVEALLRWQHR 171 A+N ++ R+ M + LR A++++E++++YQP V +++G I G+EAL+RW+H+ Sbjct: 1085 AMNKKIVERMAMENSLRHALERRELVVYYQPLVCIRTGRITGMEALIRWRHK 1136