BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0150.p (552 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776184.1| single-stranded-DNA-specific exonuclease [He... 977 0.0 ref|YP_001100485.1| ssDNA exonuclease [Herminiimonas arsenicoxyd... 880 0.0 ref|YP_004753761.1| single-stranded-DNA-specific exonuclease rec... 879 0.0 ref|ZP_08273599.1| Single-stranded-DNA-specific exonuclease recJ... 877 0.0 ref|YP_001352953.1| single-stranded-DNA-specific exonuclease pro... 867 0.0 >ref|YP_003776184.1| single-stranded-DNA-specific exonuclease [Herbaspirillum seropedicae SmR1] gb|ADJ64276.1| single-stranded-DNA-specific exonuclease protein [Herbaspirillum seropedicae SmR1] Length = 564 Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/564 (85%), Positives = 518/564 (91%), Gaps = 12/564 (2%) Query: 1 MIRIATRSYDPRDVDGLIHSGIHPVLARVYAARGLLNAKDLSSELGALIAPSGLLHIDAA 60 MIR+ATR+YD + LI+ G+HPVLARVYAARGL +A++L+SEL ALIAPSGLLHIDAA Sbjct: 1 MIRVATRTYDLVQAEQLINEGVHPVLARVYAARGLSSARELASELNALIAPSGLLHIDAA 60 Query: 61 AVYLADAIAAGKKMVIVADYDCDGATACAVGLRGLRSLGAQVDFIVPNRFEYGYGLTPEI 120 A YLADAIAA KK+VIVADYDCDGATACAVGLRGLR LGAQVD+IVPNRFEYGYGLTPEI Sbjct: 61 ASYLADAIAARKKLVIVADYDCDGATACAVGLRGLRLLGAQVDYIVPNRFEYGYGLTPEI 120 Query: 121 VELTIREKSPDIIVTVDNGIASIDGVAAAKARGIDVVVTDHHLPGDSLPDARVIVNPNQP 180 VELT+REK+PDIIVTVDNGIASIDGVA AK RGIDVVVTDHHLPGD+LP ARVIVNPNQP Sbjct: 121 VELTVREKNPDIIVTVDNGIASIDGVAEAKRRGIDVVVTDHHLPGDALPQARVIVNPNQP 180 Query: 181 SCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDTLLDLVALGTVADVVKLDA 240 CGFPSKNLAGVGVMFYVLLALRAEMRKRG+FDAQTQP+LD+LLDLVALGTVADVVKLDA Sbjct: 181 QCGFPSKNLAGVGVMFYVLLALRAEMRKRGLFDAQTQPRLDSLLDLVALGTVADVVKLDA 240 Query: 241 NNRILVAQGLKRMRA------------XTRARARRATPFDLGFAVGPRLNAAGRLADMAL 288 NNRILVAQGLKRMR+ ARRATPFDLGFAVGPRLNAAGRLADM+L Sbjct: 241 NNRILVAQGLKRMRSGKMHPGIAALFRAAGREARRATPFDLGFAVGPRLNAAGRLADMSL 300 Query: 289 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALNLLDDFNPQDRRTISVFDASW 348 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTAL LLDD+NP DRRTI+VFD SW Sbjct: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALLLLDDYNPADRRTIAVFDPSW 360 Query: 349 HQGVIGIVASRLKDRFYRPTITFAPGDEGLIKGSGRSIAGFHLRDALDLVSKHAPSVITK 408 HQGVIGIVASRLKD+FYRPTITFAPGDEG IKGSGRSIAGFHLRDALDLVSKHAPSV+TK Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFAPGDEGFIKGSGRSIAGFHLRDALDLVSKHAPSVMTK 420 Query: 409 FGGHAMAAGLTIHAEAFDAFAQAFEEVGKDWLSQNQLERVVETDGMLEDAYYSVNFISLM 468 FGGHAMAAGLTIHAEAFDAF+ AFE VG+DWL+QNQLERV+ETDG+LEDAYYSV FI+LM Sbjct: 421 FGGHAMAAGLTIHAEAFDAFSHAFEAVGRDWLTQNQLERVIETDGVLEDAYYSVEFITLM 480 Query: 469 DDQVWGQGFAPPVFCDRFRVLSQRILKEKHLKLLLEKNGQKYDAIWFGNTDALPDYATVA 528 D QVWGQGFAPPVFCD FRVL+QRILKEKHLKL LEK+G++YDAIWFG+TD+LP+ A VA Sbjct: 481 DQQVWGQGFAPPVFCDHFRVLNQRILKEKHLKLQLEKDGRRYDAIWFGHTDSLPELAKVA 540 Query: 529 FRLDANEYNGTTKVQLMVEHAEPA 552 FRLDANEYNG T VQLMVEHAEPA Sbjct: 541 FRLDANEYNGRTTVQLMVEHAEPA 564 >ref|YP_001100485.1| ssDNA exonuclease [Herminiimonas arsenicoxydans] emb|CAL62362.1| Single-stranded-DNA-specific exonuclease RecJ [Herminiimonas arsenicoxydans] Length = 564 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/562 (78%), Positives = 488/562 (86%), Gaps = 12/562 (2%) Query: 1 MIRIATRSYDPRDVDGLIHSGIHPVLARVYAARGLLNAKDLSSELGALIAPSGLLHIDAA 60 M RI TR Y RD + + SG+HPV+AR+Y ARGLL+ K+L+SEL ALI P GLLHID A Sbjct: 1 MTRITTRPYPFRDAERMRQSGVHPVMARLYTARGLLDLKELTSELSALIPPPGLLHIDVA 60 Query: 61 AVYLADAIAAGKKMVIVADYDCDGATACAVGLRGLRSLGAQVDFIVPNRFEYGYGLTPEI 120 AV+LADAIA KK+VIVADYDCDGATACAV LRGLR++GA VDFIVPNRFEYGYGLTPEI Sbjct: 61 AVFLADAIADKKKLVIVADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLTPEI 120 Query: 121 VELTIREKSPDIIVTVDNGIASIDGVAAAKARGIDVVVTDHHLPGDSLPDARVIVNPNQP 180 V L +REKSPDIIVTVDNGIASIDGVA A RGIDVVVTDHHLP D+LP ARVIVNPNQP Sbjct: 121 VALAVREKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQP 180 Query: 181 SCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDTLLDLVALGTVADVVKLDA 240 CGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLD LLDLVALGTVADVVKLDA Sbjct: 181 DCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVKLDA 240 Query: 241 NNRILVAQGLKRMRAXT---------RA---RARRATPFDLGFAVGPRLNAAGRLADMAL 288 NNRILVAQGLKRMRA RA AR A+PFDLGFA+GPRLNAAGRL+DM+L Sbjct: 241 NNRILVAQGLKRMRAGRMHAGIAALFRAAGREARSASPFDLGFALGPRLNAAGRLSDMSL 300 Query: 289 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALNLLDDFNPQDRRTISVFDASW 348 GIECLTTDDEGRAWAIAQQLD INRERR IEA MQDTAL LLD F+PQD TIS+FD SW Sbjct: 301 GIECLTTDDEGRAWAIAQQLDEINRERRTIEADMQDTALLLLDKFDPQDSTTISIFDPSW 360 Query: 349 HQGVIGIVASRLKDRFYRPTITFAPGDEGLIKGSGRSIAGFHLRDALDLVSKHAPSVITK 408 HQGVIGIVASRLKD+FYRPTITFA +G IKGSGRSIAGFHLRDALDLVSKHAP++I K Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAPTLIDK 420 Query: 409 FGGHAMAAGLTIHAEAFDAFAQAFEEVGKDWLSQNQLERVVETDGMLEDAYYSVNFISLM 468 FGGHAMAAGLTI A++ D+F QAFE VGKDWLS+NQLERV+ETDG LE AY++ FI LM Sbjct: 421 FGGHAMAAGLTIRADSLDSFTQAFEAVGKDWLSRNQLERVIETDGPLEPAYFTTQFIELM 480 Query: 469 DDQVWGQGFAPPVFCDRFRVLSQRILKEKHLKLLLEKNGQKYDAIWFGNTDALPDYATVA 528 +QVWGQGFAPP+FCD FRV++QRILKE+HLKL LEK+GQ++DAIWFG+ D+LP A VA Sbjct: 481 AEQVWGQGFAPPLFCDEFRVVNQRILKERHLKLTLEKDGQQFDAIWFGHIDSLPATARVA 540 Query: 529 FRLDANEYNGTTKVQLMVEHAE 550 +RLDANE+NG T+VQL+VEHAE Sbjct: 541 YRLDANEFNGRTRVQLLVEHAE 562 >ref|YP_004753761.1| single-stranded-DNA-specific exonuclease recJ [Collimonas fungivorans Ter331] gb|AEK62938.1| Single-stranded-DNA-specific exonuclease recJ [Collimonas fungivorans Ter331] Length = 564 Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/562 (83%), Positives = 498/562 (88%), Gaps = 12/562 (2%) Query: 1 MIRIATRSYDPRDVDGLIHSGIHPVLARVYAARGLLNAKDLSSELGALIAPSGLLHIDAA 60 M RI TR Y RD + L SGIHPVLARVY ARGLL+AK+L SEL ALI PSGLLHIDAA Sbjct: 1 MTRIVTRPYSFRDSERLCQSGIHPVLARVYTARGLLDAKELESELNALIPPSGLLHIDAA 60 Query: 61 AVYLADAIAAGKKMVIVADYDCDGATACAVGLRGLRSLGAQVDFIVPNRFEYGYGLTPEI 120 A++LADAIAA KKMVIVADYDCDGATACAVGLRGLR LGA +DFIVPNRFEYGYGLTPEI Sbjct: 61 AIFLADAIAAKKKMVIVADYDCDGATACAVGLRGLRLLGANIDFIVPNRFEYGYGLTPEI 120 Query: 121 VELTIREKSPDIIVTVDNGIASIDGVAAAKARGIDVVVTDHHLPGDSLPDARVIVNPNQP 180 VELT REKSPDIIVTVDNGIASIDGVA A RGI+VVVTDHHLP D+LP ARVIVNPNQP Sbjct: 121 VELTAREKSPDIIVTVDNGIASIDGVAEANRRGIEVVVTDHHLPADTLPAARVIVNPNQP 180 Query: 181 SCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDTLLDLVALGTVADVVKLDA 240 CGFPSKNLAGVGVMFYVLLALRAE+R+RG+FDAQ+QPKLD LLDLVALGTVADVVKLDA Sbjct: 181 ECGFPSKNLAGVGVMFYVLLALRAELRRRGVFDAQSQPKLDVLLDLVALGTVADVVKLDA 240 Query: 241 NNRILVAQGLKRMRA------------XTRARARRATPFDLGFAVGPRLNAAGRLADMAL 288 NNRILVAQGLKRMRA ARRATPFDLGFA+GPRLNAAGRLADMAL Sbjct: 241 NNRILVAQGLKRMRAGRMHAGIAALFRAAGREARRATPFDLGFALGPRLNAAGRLADMAL 300 Query: 289 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALNLLDDFNPQDRRTISVFDASW 348 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTAL LLDDF PQD TISVFDASW Sbjct: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALALLDDFKPQDSTTISVFDASW 360 Query: 349 HQGVIGIVASRLKDRFYRPTITFAPGDEGLIKGSGRSIAGFHLRDALDLVSKHAPSVITK 408 HQGVIGIVASRLKD+FYRPTITFAPG EGLIKGSGRSI GFHLRDALDLVSKHAPS+I K Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFAPGGEGLIKGSGRSIPGFHLRDALDLVSKHAPSLIQK 420 Query: 409 FGGHAMAAGLTIHAEAFDAFAQAFEEVGKDWLSQNQLERVVETDGMLEDAYYSVNFISLM 468 FGGHAMAAGLTI A+AFDAFA AFE+VG++WL Q+QLERV+ETDG LEDAYY+ FI LM Sbjct: 421 FGGHAMAAGLTIRADAFDAFAAAFEKVGREWLGQSQLERVIETDGPLEDAYYTTQFIELM 480 Query: 469 DDQVWGQGFAPPVFCDRFRVLSQRILKEKHLKLLLEKNGQKYDAIWFGNTDALPDYATVA 528 D QVWGQGFAPP+FCD FRV+SQRILKEKHLKLLLE+NG +YDAIWFG+TD L A VA Sbjct: 481 DGQVWGQGFAPPLFCDEFRVVSQRILKEKHLKLLLERNGTRYDAIWFGHTDELGSKAKVA 540 Query: 529 FRLDANEYNGTTKVQLMVEHAE 550 FRLDANEYNG TKVQLMVEHAE Sbjct: 541 FRLDANEYNGVTKVQLMVEHAE 562 >ref|ZP_08273599.1| Single-stranded-DNA-specific exonuclease recJ [Oxalobacteraceae bacterium IMCC9480] gb|EGF32943.1| Single-stranded-DNA-specific exonuclease recJ [Oxalobacteraceae bacterium IMCC9480] Length = 564 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/564 (79%), Positives = 492/564 (87%), Gaps = 12/564 (2%) Query: 1 MIRIATRSYDPRDVDGLIHSGIHPVLARVYAARGLLNAKDLSSELGALIAPSGLLHIDAA 60 M R+ATR+ PRD + LI GIHPVLAR+Y ARGLL+A++LSSEL ++IAPSGLLHIDAA Sbjct: 1 MTRLATRAASPRDTERLIQDGIHPVLARLYVARGLLDARELSSELSSMIAPSGLLHIDAA 60 Query: 61 AVYLADAIAAGKKMVIVADYDCDGATACAVGLRGLRSLGAQVDFIVPNRFEYGYGLTPEI 120 A++LADAIAA K+MVIVADYDCDGATACAVGLRGLR LGA VDFIVPNRFEYGYGLTPEI Sbjct: 61 AIFLADAIAAKKRMVIVADYDCDGATACAVGLRGLRMLGADVDFIVPNRFEYGYGLTPEI 120 Query: 121 VELTIREKSPDIIVTVDNGIASIDGVAAAKARGIDVVVTDHHLPGDSLPDARVIVNPNQP 180 V L EKSPDIIVTVDNGIASIDGVA A RGIDVVVTDHHLP D+LP ARVIVNPNQP Sbjct: 121 VALAQAEKSPDIIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQP 180 Query: 181 SCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQTQPKLDTLLDLVALGTVADVVKLDA 240 CGFPSKNLAGVGVMFYVLLALRAE+RKRGIFD +QPKLD LLDLVALGTVADVVKLDA Sbjct: 181 ECGFPSKNLAGVGVMFYVLLALRAELRKRGIFDQHSQPKLDVLLDLVALGTVADVVKLDA 240 Query: 241 NNRILVAQGLKRMRA------------XTRARARRATPFDLGFAVGPRLNAAGRLADMAL 288 NNRILVAQGLKRMRA + AR+A+PFDLGFA+GPRLNAAGRLADM+L Sbjct: 241 NNRILVAQGLKRMRAGRMHAGVAALFRASAREARKASPFDLGFALGPRLNAAGRLADMSL 300 Query: 289 GIECLTTDDEGRAWAIAQQLDAINRERRDIEAGMQDTALNLLDDFNPQDRRTISVFDASW 348 GIECLTTDDEGRAWAIAQQLDAINRERRDIEA MQDTAL LLD FNPQD TISVFDA W Sbjct: 301 GIECLTTDDEGRAWAIAQQLDAINRERRDIEADMQDTALELLDSFNPQDNSTISVFDAGW 360 Query: 349 HQGVIGIVASRLKDRFYRPTITFAPGDEGLIKGSGRSIAGFHLRDALDLVSKHAPSVITK 408 HQGVIGIVASRLKD+FYRPTITFAP +G IKGSGRSI GFHLRDALDLVSKHAP++I K Sbjct: 361 HQGVIGIVASRLKDKFYRPTITFAPASDGWIKGSGRSIPGFHLRDALDLVSKHAPTLIDK 420 Query: 409 FGGHAMAAGLTIHAEAFDAFAQAFEEVGKDWLSQNQLERVVETDGMLEDAYYSVNFISLM 468 FGGHAMAAGLT+ AE FDAFA AFE VG+ WL+QNQLERV+E DG LEDA+++ FI L+ Sbjct: 421 FGGHAMAAGLTLRAENFDAFAAAFEAVGRSWLTQNQLERVLENDGSLEDAFFTTQFIDLL 480 Query: 469 DDQVWGQGFAPPVFCDRFRVLSQRILKEKHLKLLLEKNGQKYDAIWFGNTDALPDYATVA 528 D QVWGQGFAPPVFCD FRV+SQRILKE+HLKL LE+NGQ++DAIWFG+TD L A VA Sbjct: 481 DAQVWGQGFAPPVFCDEFRVISQRILKERHLKLQLERNGQRFDAIWFGHTDDLGGRARVA 540 Query: 529 FRLDANEYNGTTKVQLMVEHAEPA 552 +RLDANEYNG T+VQLMVE+AE A Sbjct: 541 YRLDANEYNGVTRVQLMVEYAEMA 564 >ref|YP_001352953.1| single-stranded-DNA-specific exonuclease protein [Janthinobacterium sp. Marseille] gb|ABR89550.1| single-stranded-DNA-specific exonuclease protein [Janthinobacterium sp. Marseille] Length = 549 Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/548 (80%), Positives = 480/548 (87%), Gaps = 12/548 (2%) Query: 17 LIHSGIHPVLARVYAARGLLNAKDLSSELGALIAPSGLLHIDAAAVYLADAIAAGKKMVI 76 ++ SG+HPV+AR+YAARGLL+ K+L+SEL ALI P GLL ID AA +LADAIAA KK+VI Sbjct: 1 MLQSGVHPVMARLYAARGLLDLKELNSELTALIPPPGLLKIDVAATFLADAIAAKKKLVI 60 Query: 77 VADYDCDGATACAVGLRGLRSLGAQVDFIVPNRFEYGYGLTPEIVELTIREKSPDIIVTV 136 VADYDCDGATACAV LRGLR++GA VDFIVPNRFEYGYGLTPEIVEL +REKSPDIIVTV Sbjct: 61 VADYDCDGATACAVALRGLRAMGAIVDFIVPNRFEYGYGLTPEIVELAVREKSPDIIVTV 120 Query: 137 DNGIASIDGVAAAKARGIDVVVTDHHLPGDSLPDARVIVNPNQPSCGFPSKNLAGVGVMF 196 DNGIASIDGVA A RGIDVVVTDHHLP D+LP ARVIVNPNQP CGFPSKNLAGVGVMF Sbjct: 121 DNGIASIDGVAEANRRGIDVVVTDHHLPADTLPAARVIVNPNQPDCGFPSKNLAGVGVMF 180 Query: 197 YVLLALRAEMRKRGIFDAQTQPKLDTLLDLVALGTVADVVKLDANNRILVAQGLKRMRA- 255 YVLLALRAEMRKRGIFDAQTQPKLD LLDLVALGTVADVVKLDANNRILVAQGLKRMRA Sbjct: 181 YVLLALRAEMRKRGIFDAQTQPKLDALLDLVALGTVADVVKLDANNRILVAQGLKRMRAG 240 Query: 256 -----------XTRARARRATPFDLGFAVGPRLNAAGRLADMALGIECLTTDDEGRAWAI 304 ARRA+PFDLGFA+GPRLNAAGRL+DM+LGIECLTTDDEGRAWAI Sbjct: 241 RMHAGVAALFRAAGREARRASPFDLGFALGPRLNAAGRLSDMSLGIECLTTDDEGRAWAI 300 Query: 305 AQQLDAINRERRDIEAGMQDTALNLLDDFNPQDRRTISVFDASWHQGVIGIVASRLKDRF 364 AQQLD INRERR IEA MQDTAL LL++FNPQD+ TISVFD SWHQGVIGIVASRLKD+F Sbjct: 301 AQQLDEINRERRTIEADMQDTALLLLENFNPQDKTTISVFDPSWHQGVIGIVASRLKDKF 360 Query: 365 YRPTITFAPGDEGLIKGSGRSIAGFHLRDALDLVSKHAPSVITKFGGHAMAAGLTIHAEA 424 YRPTITFA +G IKGSGRSIAGFHLRDALDLVSKHAP +I KFGGHAMAAGLTI A+A Sbjct: 361 YRPTITFADAGDGWIKGSGRSIAGFHLRDALDLVSKHAPKLIDKFGGHAMAAGLTIRADA 420 Query: 425 FDAFAQAFEEVGKDWLSQNQLERVVETDGMLEDAYYSVNFISLMDDQVWGQGFAPPVFCD 484 DAF +AFE VGKDWL QNQLERVVETDG LE AY++ FI LM+ QVWGQGFAPP+FCD Sbjct: 421 LDAFTEAFEAVGKDWLDQNQLERVVETDGPLESAYFTTQFIELMEAQVWGQGFAPPLFCD 480 Query: 485 RFRVLSQRILKEKHLKLLLEKNGQKYDAIWFGNTDALPDYATVAFRLDANEYNGTTKVQL 544 FRV++QRILKE+HLKL LEK+G YDAIWFG+ D+LP+ A VA+RLDANE+NG T+VQL Sbjct: 481 EFRVVNQRILKERHLKLTLEKDGASYDAIWFGHIDSLPNRARVAYRLDANEFNGRTRVQL 540 Query: 545 MVEHAEPA 552 +VEHAE A Sbjct: 541 LVEHAEAA 548