BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0149.p (455 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753441.1| TRAP transporter solute receptor, TAXI famil... 586 e-165 ref|ZP_06845939.1| TRAP transporter solute receptor, TAXI family... 541 e-152 ref|YP_003608507.1| TRAP transporter solute receptor TAXI family... 541 e-151 ref|YP_552631.1| putative TRAP-type transport system periplasmic... 539 e-151 ref|ZP_03264795.1| TRAP transporter solute receptor, TAXI family... 536 e-150 >ref|YP_004753441.1| TRAP transporter solute receptor, TAXI family [Collimonas fungivorans Ter331] gb|AEK62618.1| TRAP transporter solute receptor, TAXI family [Collimonas fungivorans Ter331] Length = 457 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/438 (64%), Positives = 356/438 (81%), Gaps = 2/438 (0%) Query: 8 LHRIQKPPMTPQRLRRLMLIGSLVLLAVC-WIVLAMLKPATQGKIVMTAGAEGGIYHNYA 66 LHRIQK PMT QRLR L++ G++V +AV W ++ +LKPATQ IV+TAGA+ GIY+ +A Sbjct: 18 LHRIQKAPMTTQRLR-LLITGAVVAIAVVGWALVTILKPATQRTIVITAGADKGIYNGFA 76 Query: 67 QRYAQILKRDGITLDIRTSSGSVENFQRLREDDSEFQVGFIQSGTGNGEQAPGIQTIAAI 126 +RYA +LKR+GITLDIR SSGSVEN+QRL++ +SE++VGFIQSGT + +QTIAAI Sbjct: 77 ERYAPLLKREGITLDIRNSSGSVENYQRLKDPESEYEVGFIQSGTTTPSENDQLQTIAAI 136 Query: 127 SYEPIWVFYQGNATYDRLSQLRGKRISLGLPGSGLRIVANDLLTENGITTNNSTLEELSG 186 SYEPIWVFY+G+ +RL+QL+GKRIS+G+PGSGL V+ LL +GI +N+ L E+ Sbjct: 137 SYEPIWVFYRGDTVINRLAQLKGKRISIGVPGSGLLKVSRTLLGHSGINADNAKLLEMDA 196 Query: 187 NKAYEQLLNNKIDAAFFIGRADSQLIHTLLNSGMKLMSFSQADALVQKFPSLSKITYPRG 246 KAY+ L N ++DAAFFIGR D+ + LLNS +KLMSF+QADALV KFPSLSKI +PR Sbjct: 197 YKAYQNLENGQLDAAFFIGRPDAAMQQMLLNSDLKLMSFAQADALVLKFPSLSKIIFPRA 256 Query: 247 ATSLINDRPSHDVTLLAATAMLVSKESLHPALAYLLLDAANVIHTAPDFFTPRNYFPNQN 306 +TS+ ND P DVTLLAATA+LVSK++LHPAL YLLL+AAN H D+FTPR FPN N Sbjct: 257 STSVANDLPQADVTLLAATALLVSKDTLHPALVYLLLEAANTAHAREDYFTPRGTFPNLN 316 Query: 307 IEDFNISDETRRYFRSGRPFLQRYLPFWLANFIERRFTILLPFIAVLFGLIQAVPRIYEA 366 +DF ISDE+ RYF+SGRPFLQRYLPFWLA+FIERR ILLPF+A+LFGL+QA+PR+ E+ Sbjct: 317 TDDFPISDESTRYFKSGRPFLQRYLPFWLASFIERRLLILLPFMALLFGLLQALPRMVES 376 Query: 367 SMKKRLVVWYKEIHLLEEEIWNTQEPSDEKLAEWHAEIEEIDANANQIDIPQRYYGDVYA 426 MK RLVVWY+EI LE+EIW+T++PS E++A+W +IE IDANA+QI IPQRY+ DVYA Sbjct: 377 RMKNRLVVWYREIKSLEDEIWSTKQPSKEQIAQWRDDIENIDANASQIRIPQRYFQDVYA 436 Query: 427 LKQAIRVVRDRVSEVANQ 444 LKQAIRVVR+R+ +VA + Sbjct: 437 LKQAIRVVRERIVQVAQK 454 >ref|ZP_06845939.1| TRAP transporter solute receptor, TAXI family [Burkholderia sp. Ch1-1] gb|EFG66446.1| TRAP transporter solute receptor, TAXI family [Burkholderia sp. Ch1-1] Length = 447 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 271/438 (61%), Positives = 352/438 (80%), Gaps = 2/438 (0%) Query: 8 LHRIQKPPMTPQRLRRLMLIGSLVLLAVC-WIVLAMLKPATQGKIVMTAGAEGGIYHNYA 66 L R +K P+ P+R L + G+++LLAV W++ +L PA Q IVMT+GA+GGIY +A Sbjct: 8 LQRARKAPVKPRR-PWLFITGAILLLAVSGWVLAIILAPAFQHTIVMTSGADGGIYRGFA 66 Query: 67 QRYAQILKRDGITLDIRTSSGSVENFQRLREDDSEFQVGFIQSGTGNGEQAPGIQTIAAI 126 +RYA ILK+ GITLDIR+SSGSVEN+QRL++ SE+QVGFIQSGT ++ ++TIAA+ Sbjct: 67 ERYAPILKQKGITLDIRSSSGSVENYQRLKDPRSEYQVGFIQSGTTRPKETDDLKTIAAV 126 Query: 127 SYEPIWVFYQGNATYDRLSQLRGKRISLGLPGSGLRIVANDLLTENGITTNNSTLEELSG 186 SYEPIWVFY+G+AT DRL+QLRGKRIS+G+PGSGL VA LL +G++ +N+TL ++ Sbjct: 127 SYEPIWVFYRGDATIDRLAQLRGKRISIGVPGSGLLNVALQLLAYSGVSGDNTTLLQMDA 186 Query: 187 NKAYEQLLNNKIDAAFFIGRADSQLIHTLLNSGMKLMSFSQADALVQKFPSLSKITYPRG 246 KAY+ L N ++DAAFFIGR D+++ TLLNS +KLMSF+QADALVQKFPSLSK+ +PRG Sbjct: 187 AKAYQSLENGQLDAAFFIGRPDAEMQRTLLNSNLKLMSFAQADALVQKFPSLSKVIFPRG 246 Query: 247 ATSLINDRPSHDVTLLAATAMLVSKESLHPALAYLLLDAANVIHTAPDFFTPRNYFPNQN 306 +TS+ NDRPS DVTLLAATA+LV+KESLHPA YLLLDAA+ +H D+FTP FPN N Sbjct: 247 STSIANDRPSADVTLLAATALLVAKESLHPAFVYLLLDAASAVHGREDYFTPLGRFPNVN 306 Query: 307 IEDFNISDETRRYFRSGRPFLQRYLPFWLANFIERRFTILLPFIAVLFGLIQAVPRIYEA 366 ++F +SDE+ RYF+SGRPFLQRYLPFWLA+F+ERR ILLPF A+L G++QA+PRI E Sbjct: 307 TDEFPVSDESIRYFKSGRPFLQRYLPFWLASFVERRLLILLPFAALLLGVLQALPRIAET 366 Query: 367 SMKKRLVVWYKEIHLLEEEIWNTQEPSDEKLAEWHAEIEEIDANANQIDIPQRYYGDVYA 426 +K RLVVWY+E+ LLE+EI ++ PS E++++W EIE+IDA+ANQI +PQRY D+YA Sbjct: 367 RIKNRLVVWYREVKLLEDEIRRSERPSREQISQWSDEIEQIDAHANQIRLPQRYLPDIYA 426 Query: 427 LKQAIRVVRDRVSEVANQ 444 LKQAI VVR R+S +A Q Sbjct: 427 LKQAIDVVRGRISYMARQ 444 >ref|YP_003608507.1| TRAP transporter solute receptor TAXI family protein [Burkholderia sp. CCGE1002] gb|ADG18996.1| TRAP transporter solute receptor TAXI family protein [Burkholderia sp. CCGE1002] Length = 432 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 262/418 (62%), Positives = 326/418 (77%), Gaps = 1/418 (0%) Query: 28 GSLVLLAV-CWIVLAMLKPATQGKIVMTAGAEGGIYHNYAQRYAQILKRDGITLDIRTSS 86 G++VL+A W++ +L+PA Q IV+T GA+GGIY +A RYA +LKR+GI LDIR+SS Sbjct: 12 GAIVLVAAFGWMLALILEPAFQRTIVITTGADGGIYRGFADRYAPLLKREGIKLDIRSSS 71 Query: 87 GSVENFQRLREDDSEFQVGFIQSGTGNGEQAPGIQTIAAISYEPIWVFYQGNATYDRLSQ 146 GSVEN+QRL + DS +QVGFIQSGT + +QTIAA+SYEPIWVFY+G+AT DRLSQ Sbjct: 72 GSVENYQRLADPDSAYQVGFIQSGTTRPKDTDNLQTIAAVSYEPIWVFYRGDATIDRLSQ 131 Query: 147 LRGKRISLGLPGSGLRIVANDLLTENGITTNNSTLEELSGNKAYEQLLNNKIDAAFFIGR 206 LRGKRIS+G+PGSGL V+ LL +G+T+ NSTL ++ AY+ L + +IDAAFFIGR Sbjct: 132 LRGKRISIGVPGSGLLNVSQVLLGYSGVTSQNSTLLQMDATAAYQGLESGQIDAAFFIGR 191 Query: 207 ADSQLIHTLLNSGMKLMSFSQADALVQKFPSLSKITYPRGATSLINDRPSHDVTLLAATA 266 D+ + HTLL S +KLMSF+QADAL QKFPSLSKI PR +TS+ +D P +DVTLLAATA Sbjct: 192 PDADMQHTLLTSNLKLMSFAQADALAQKFPSLSKIVLPRASTSVADDLPRNDVTLLAATA 251 Query: 267 MLVSKESLHPALAYLLLDAANVIHTAPDFFTPRNYFPNQNIEDFNISDETRRYFRSGRPF 326 +LVSK++LHPAL YLLLDAA +H D+FTP FPN N E+F ISDE+ RYF+SGRPF Sbjct: 252 LLVSKDTLHPALVYLLLDAARTVHGGEDYFTPLGTFPNLNTEEFPISDESVRYFKSGRPF 311 Query: 327 LQRYLPFWLANFIERRFTILLPFIAVLFGLIQAVPRIYEASMKKRLVVWYKEIHLLEEEI 386 L RYLPFWLA+ IERR IL+PF+A+L GL QA+P + EA MKKRL VWY+ I LE+E+ Sbjct: 312 LYRYLPFWLASLIERRLLILVPFLALLIGLAQALPGMLEARMKKRLFVWYRAIKALEDEV 371 Query: 387 WNTQEPSDEKLAEWHAEIEEIDANANQIDIPQRYYGDVYALKQAIRVVRDRVSEVANQ 444 W EPS ++A+W EIE IDANANQI IP RY+ DVYALKQAI VVRDR++ VA + Sbjct: 372 WKNTEPSRAQIAQWSEEIENIDANANQIRIPYRYFQDVYALKQAIGVVRDRIAHVAQK 429 >ref|YP_552631.1| putative TRAP-type transport system periplasmic ligand binding protein [Burkholderia xenovorans LB400] gb|ABE33281.1| putative TRAP-type uncharacterized transport system periplasmic ligand binding protein [Burkholderia xenovorans LB400] Length = 460 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 268/438 (61%), Positives = 349/438 (79%), Gaps = 2/438 (0%) Query: 8 LHRIQKPPMTPQRLRRLMLIGSLVLLAVC-WIVLAMLKPATQGKIVMTAGAEGGIYHNYA 66 L R +K P+ P+R L + G+++LLAV W++ +L PA Q IV+T+GA+GGIY +A Sbjct: 21 LQRARKAPVKPRR-PWLFITGAILLLAVSGWVLAIILAPAFQHTIVVTSGADGGIYRGFA 79 Query: 67 QRYAQILKRDGITLDIRTSSGSVENFQRLREDDSEFQVGFIQSGTGNGEQAPGIQTIAAI 126 RYA ILK+ GITLDIR+SSGSVEN+QRL++ SE+QVGFIQSGT ++ ++TIAA+ Sbjct: 80 DRYAPILKQKGITLDIRSSSGSVENYQRLKDPRSEYQVGFIQSGTTRPKETDDLKTIAAV 139 Query: 127 SYEPIWVFYQGNATYDRLSQLRGKRISLGLPGSGLRIVANDLLTENGITTNNSTLEELSG 186 SYEPIWVFY+G+ T DRL+QLRG+RIS+G+PGSGL VA LL +G++ +N+TL ++ Sbjct: 140 SYEPIWVFYRGDTTIDRLAQLRGERISIGVPGSGLLNVALQLLAYSGVSGDNTTLLQMDA 199 Query: 187 NKAYEQLLNNKIDAAFFIGRADSQLIHTLLNSGMKLMSFSQADALVQKFPSLSKITYPRG 246 KAY+ L N ++DAAFFIGR D+++ TLLNS +KLMSF+QADALVQKFPSLSK+ +PRG Sbjct: 200 AKAYQSLENGQLDAAFFIGRPDAEMQRTLLNSNLKLMSFAQADALVQKFPSLSKVIFPRG 259 Query: 247 ATSLINDRPSHDVTLLAATAMLVSKESLHPALAYLLLDAANVIHTAPDFFTPRNYFPNQN 306 +TS+ NDRPS DVTLLAATA+LV+KESLHPA YLLLDAA+ +H D+FTP FPN N Sbjct: 260 STSIANDRPSADVTLLAATALLVAKESLHPAFVYLLLDAASAVHGREDYFTPLGKFPNVN 319 Query: 307 IEDFNISDETRRYFRSGRPFLQRYLPFWLANFIERRFTILLPFIAVLFGLIQAVPRIYEA 366 ++F +SDE+ RYF+SGRPFLQRYLPFWLA+F+ERR ILLPF A+L G++QA+PRI E Sbjct: 320 TDEFPVSDESIRYFKSGRPFLQRYLPFWLASFVERRLLILLPFAALLLGVLQALPRIAET 379 Query: 367 SMKKRLVVWYKEIHLLEEEIWNTQEPSDEKLAEWHAEIEEIDANANQIDIPQRYYGDVYA 426 +K RLVVWY+E+ LLE+EIW + P E++++W EIE+IDA+ANQI +PQRY D+YA Sbjct: 380 RIKNRLVVWYREVKLLEDEIWRSDRPGREQISQWSEEIEQIDAHANQIRLPQRYLPDIYA 439 Query: 427 LKQAIRVVRDRVSEVANQ 444 LKQAI VVR R+S +A Q Sbjct: 440 LKQAIDVVRGRISYMARQ 457 >ref|ZP_03264795.1| TRAP transporter solute receptor, TAXI family [Burkholderia sp. H160] gb|EEA03587.1| TRAP transporter solute receptor, TAXI family [Burkholderia sp. H160] Length = 432 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/418 (61%), Positives = 329/418 (78%), Gaps = 1/418 (0%) Query: 28 GSLVLLAV-CWIVLAMLKPATQGKIVMTAGAEGGIYHNYAQRYAQILKRDGITLDIRTSS 86 G+++L+AV W++ +L+PA Q IV+T+GA+GGIY +A RYA +LKR+GI LDIR+SS Sbjct: 12 GAILLVAVFGWMLALILEPAFQRTIVITSGADGGIYRGFADRYAPLLKREGIKLDIRSSS 71 Query: 87 GSVENFQRLREDDSEFQVGFIQSGTGNGEQAPGIQTIAAISYEPIWVFYQGNATYDRLSQ 146 GSVEN+QRL + DS +QVGFIQSGT N + +QTIAA+SYEPIWVFY+G+AT DRLSQ Sbjct: 72 GSVENYQRLADPDSAYQVGFIQSGTTNPKDTDNLQTIAAVSYEPIWVFYRGDATLDRLSQ 131 Query: 147 LRGKRISLGLPGSGLRIVANDLLTENGITTNNSTLEELSGNKAYEQLLNNKIDAAFFIGR 206 +RGKRIS+G+PGSGL V+ LL +G+T+ NSTL ++ N AY+ L + ++DAAFFIGR Sbjct: 132 MRGKRISMGVPGSGLLNVSQVLLGYSGVTSQNSTLLQMDANAAYQGLESGQVDAAFFIGR 191 Query: 207 ADSQLIHTLLNSGMKLMSFSQADALVQKFPSLSKITYPRGATSLINDRPSHDVTLLAATA 266 D+ + TLL S +KLMSF+QADALVQKFPSLSKI PR +TS+ +D P +DVTLLAATA Sbjct: 192 PDADMQRTLLTSNLKLMSFAQADALVQKFPSLSKIVLPRASTSVADDLPRNDVTLLAATA 251 Query: 267 MLVSKESLHPALAYLLLDAANVIHTAPDFFTPRNYFPNQNIEDFNISDETRRYFRSGRPF 326 +LVSK++LHPAL YLLLD A +H D+FTP FPN N E+F IS E+ RYF+SGRPF Sbjct: 252 LLVSKDTLHPALVYLLLDTARAVHGGEDYFTPIGTFPNLNTEEFPISGESERYFKSGRPF 311 Query: 327 LQRYLPFWLANFIERRFTILLPFIAVLFGLIQAVPRIYEASMKKRLVVWYKEIHLLEEEI 386 L RYLPFWLA+ IERR IL+PF+A+L GL QA+PR+ EA MKKRL VWY+ I LE+E+ Sbjct: 312 LYRYLPFWLASLIERRLLILVPFLALLIGLAQALPRMLEARMKKRLFVWYRAIKALEDEV 371 Query: 387 WNTQEPSDEKLAEWHAEIEEIDANANQIDIPQRYYGDVYALKQAIRVVRDRVSEVANQ 444 W +PS ++A+W EIE IDA+A+QI IP RY+ DVYALKQAI +VRDR++ VA + Sbjct: 372 WKNAQPSRAQIAQWTEEIESIDAHASQIRIPYRYFQDVYALKQAIGIVRDRIAHVAQK 429