BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0144.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352951.1| peptide chain release factor 2 [Janthinobact... 649 0.0 ref|YP_003776188.1| peptide chain release factor 2 [Herbaspirill... 638 0.0 ref|YP_001100487.1| peptide chain release factor 2 [Herminiimona... 604 e-171 ref|ZP_04578248.1| peptide chain release factor 2 [Oxalobacter f... 603 e-170 ref|ZP_04576058.1| peptide chain release factor 2 [Oxalobacter f... 596 e-168 >ref|YP_001352951.1| peptide chain release factor 2 [Janthinobacterium sp. Marseille] sp|A6SXF4.1|RF2_JANMA RecName: Full=Peptide chain release factor 2; Short=RF-2 gb|ABR88973.1| RF-2 peptide chain release factor [Janthinobacterium sp. Marseille] Length = 367 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/341 (90%), Positives = 324/341 (95%) Query: 9 FDFDVKSEKLDQVNGELEDPEVWNDPKRAQDLGKEKKSLENIVHTLIKIDGDLNDTRDLF 68 DFDVKSEKLDQVNGELEDP+VWND KRAQDLGKEKKSLE IVHTLIKID +LND RDLF Sbjct: 27 LDFDVKSEKLDQVNGELEDPDVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELNDARDLF 86 Query: 69 AMAREEKDDETLEAIEPDAEAIKALVEGMEFRRMFSNPMDPNNCFIDIQAGAGGTEAQDW 128 MAREEKD++T+ AIE DA+ + LVEGMEFRRMFSNPMD NNCFIDIQAGAGGTEAQDW Sbjct: 87 EMAREEKDEDTIVAIENDAQELLKLVEGMEFRRMFSNPMDANNCFIDIQAGAGGTEAQDW 146 Query: 129 ASMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRK 188 ASMLLRQYLRYCERKGFK EILEQSDGEVAGIKTAT+KVEG+YAYGFLRTETGVHRLVRK Sbjct: 147 ASMLLRQYLRYCERKGFKVEILEQSDGEVAGIKTATLKVEGDYAYGFLRTETGVHRLVRK 206 Query: 189 SPFDSANGRHTSFSSLFVYPEVDESFEIDINPADVRVDTYRASGAGGQHINKTDSAVRLT 248 SPFDSANGRHTSFSSLFVYPEVD+S EIDINPADVR+DTYRASGAGGQHINKTDSAVRLT Sbjct: 207 SPFDSANGRHTSFSSLFVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVRLT 266 Query: 249 HGPSGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIR 308 HGPSGIVVQCQNDRSQHRN+AEAWDML+AKLFELE+R RMSEQQKLEDSKTDVGWGHQIR Sbjct: 267 HGPSGIVVQCQNDRSQHRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWGHQIR 326 Query: 309 SYVLDQSRIKDLRTNFEMGNTKAVLDGELDGFIAASLKQGV 349 SYVLDQSRIKDLRTNFE GNTKAVLDG+LD FIAASLKQGV Sbjct: 327 SYVLDQSRIKDLRTNFETGNTKAVLDGDLDDFIAASLKQGV 367 >ref|YP_003776188.1| peptide chain release factor 2 [Herbaspirillum seropedicae SmR1] gb|ADJ64280.1| peptide chain release factor 2 (RF-2) protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/337 (91%), Positives = 319/337 (94%) Query: 13 VKSEKLDQVNGELEDPEVWNDPKRAQDLGKEKKSLENIVHTLIKIDGDLNDTRDLFAMAR 72 +KSEKL+QVN ELEDP VWND KRAQDLGKEKKSLE IVHTLIKID +L D RDLF MAR Sbjct: 1 MKSEKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLFEMAR 60 Query: 73 EEKDDETLEAIEPDAEAIKALVEGMEFRRMFSNPMDPNNCFIDIQAGAGGTEAQDWASML 132 EEKD++T+ AIE DAE +K +VE MEFRRMFS PMD NNCFIDIQAGAGGTEAQDWASML Sbjct: 61 EEKDEDTIIAIEGDAENLKKMVEEMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASML 120 Query: 133 LRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFD 192 LRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFD Sbjct: 121 LRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFD 180 Query: 193 SANGRHTSFSSLFVYPEVDESFEIDINPADVRVDTYRASGAGGQHINKTDSAVRLTHGPS 252 S+NGRHTSFSSLFVYPEVDESFEI+INPADVRVDTYRASGAGGQHINKTDSAVRLTH PS Sbjct: 181 SSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLTHAPS 240 Query: 253 GIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVL 312 GIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVL Sbjct: 241 GIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVL 300 Query: 313 DQSRIKDLRTNFEMGNTKAVLDGELDGFIAASLKQGV 349 DQSRIKDLRTNFE GNTKAVLDG++D FIAASLKQGV Sbjct: 301 DQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQGV 337 >ref|YP_001100487.1| peptide chain release factor 2 [Herminiimonas arsenicoxydans] emb|CAL62364.1| Peptide chain release factor 2 (RF-2) [Herminiimonas arsenicoxydans] Length = 325 Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust. Identities = 286/325 (88%), Positives = 303/325 (93%) Query: 25 LEDPEVWNDPKRAQDLGKEKKSLENIVHTLIKIDGDLNDTRDLFAMAREEKDDETLEAIE 84 +EDP+VW+DPKRAQDLGKEKKSLE IVHTLIK+D +L D DLF MAREE D++T+ AIE Sbjct: 1 MEDPKVWDDPKRAQDLGKEKKSLEAIVHTLIKVDAELKDAHDLFEMAREENDEDTIVAIE 60 Query: 85 PDAEAIKALVEGMEFRRMFSNPMDPNNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG 144 D + + VEGMEFRRMFS PMD NNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG Sbjct: 61 ADTQELLKTVEGMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKG 120 Query: 145 FKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSPFDSANGRHTSFSSL 204 FK EILEQSDGEVAGIKTAT+KVEGEYAYG LRTETGVHRLVRKSPFDSANGRHTSFSSL Sbjct: 121 FKVEILEQSDGEVAGIKTATLKVEGEYAYGLLRTETGVHRLVRKSPFDSANGRHTSFSSL 180 Query: 205 FVYPEVDESFEIDINPADVRVDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQNDRSQ 264 FVYPEVD+S EIDINPADVR+DTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQNDRSQ Sbjct: 181 FVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQNDRSQ 240 Query: 265 HRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF 324 HRN+AEAWDML+AKLFELE+R RMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF Sbjct: 241 HRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNF 300 Query: 325 EMGNTKAVLDGELDGFIAASLKQGV 349 E GNTKAVLDG+LD FIAASLKQGV Sbjct: 301 ETGNTKAVLDGDLDDFIAASLKQGV 325 >ref|ZP_04578248.1| peptide chain release factor 2 [Oxalobacter formigenes OXCC13] gb|EEO29221.1| peptide chain release factor 2 [Oxalobacter formigenes OXCC13] Length = 349 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 285/349 (81%), Positives = 317/349 (90%) Query: 1 VQLNYGGIFDFDVKSEKLDQVNGELEDPEVWNDPKRAQDLGKEKKSLENIVHTLIKIDGD 60 ++L YGGIFDF KS+KL+QVN ELEDP+VWNDPK+AQDLGKEKKSLEN+V +L +I Sbjct: 1 MKLPYGGIFDFAAKSDKLEQVNAELEDPDVWNDPKKAQDLGKEKKSLENVVLSLTRIKSG 60 Query: 61 LNDTRDLFAMAREEKDDETLEAIEPDAEAIKALVEGMEFRRMFSNPMDPNNCFIDIQAGA 120 L+D +LF MA+EE+DD+TL+A++ D + +E +EFRRMFSNPMDP NCFIDIQAGA Sbjct: 61 LDDAAELFEMAKEEQDDDTLKAVDDDTLELLDQIEKLEFRRMFSNPMDPCNCFIDIQAGA 120 Query: 121 GGTEAQDWASMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTET 180 GGTEAQDWASM+LRQYLRYCERKGF A ILEQSDGEVAGIKTATIKVEG+YAYG+LRTET Sbjct: 121 GGTEAQDWASMILRQYLRYCERKGFNATILEQSDGEVAGIKTATIKVEGDYAYGYLRTET 180 Query: 181 GVHRLVRKSPFDSANGRHTSFSSLFVYPEVDESFEIDINPADVRVDTYRASGAGGQHINK 240 GVHRLVRKSPFDS+NGRHTSF SLFVYPEVD+S EIDINPADVRVDTYRASGAGGQHINK Sbjct: 181 GVHRLVRKSPFDSSNGRHTSFCSLFVYPEVDDSIEIDINPADVRVDTYRASGAGGQHINK 240 Query: 241 TDSAVRLTHGPSGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTD 300 TDSAVRLTH P+GIVVQCQNDRSQHRNRA+AW+ML+++LFELELRKRMSEQQKLEDSKTD Sbjct: 241 TDSAVRLTHAPTGIVVQCQNDRSQHRNRADAWEMLKSRLFELELRKRMSEQQKLEDSKTD 300 Query: 301 VGWGHQIRSYVLDQSRIKDLRTNFEMGNTKAVLDGELDGFIAASLKQGV 349 VGWGHQIRSYVLD SRIKDLRTN E GNTKAVLDG+LD FI SLKQGV Sbjct: 301 VGWGHQIRSYVLDNSRIKDLRTNHETGNTKAVLDGDLDDFILESLKQGV 349 >ref|ZP_04576058.1| peptide chain release factor 2 [Oxalobacter formigenes HOxBLS] gb|EEO27020.1| peptide chain release factor 2 [Oxalobacter formigenes HOxBLS] Length = 349 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 280/345 (81%), Positives = 312/345 (90%) Query: 5 YGGIFDFDVKSEKLDQVNGELEDPEVWNDPKRAQDLGKEKKSLENIVHTLIKIDGDLNDT 64 YGGIFDF KS+KL+QVN ELEDP VWNDPK+AQ+LG+EKKSLEN+V +L I L D Sbjct: 5 YGGIFDFAAKSDKLEQVNAELEDPAVWNDPKKAQELGREKKSLENVVLSLSHIKSALTDA 64 Query: 65 RDLFAMAREEKDDETLEAIEPDAEAIKALVEGMEFRRMFSNPMDPNNCFIDIQAGAGGTE 124 +LF MA+EE+DDETL+A+E D ++ +E +EFRRMFSNPMDP NCF+DIQAGAGGTE Sbjct: 65 GELFEMAKEEQDDETLKAVEADVSELQDRIEKLEFRRMFSNPMDPCNCFVDIQAGAGGTE 124 Query: 125 AQDWASMLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHR 184 AQDWASM+LRQYLRYCERKGF A ILEQSDGE+AGIKTATIKVEG+YAYG+LRTETGVHR Sbjct: 125 AQDWASMILRQYLRYCERKGFNATILEQSDGEIAGIKTATIKVEGDYAYGYLRTETGVHR 184 Query: 185 LVRKSPFDSANGRHTSFSSLFVYPEVDESFEIDINPADVRVDTYRASGAGGQHINKTDSA 244 LVRKSPFDSANGRHTSF SLFVYPEVD+S EIDINPADVRVDTYRASGAGGQHINKTDSA Sbjct: 185 LVRKSPFDSANGRHTSFCSLFVYPEVDDSIEIDINPADVRVDTYRASGAGGQHINKTDSA 244 Query: 245 VRLTHGPSGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWG 304 VRLTH P+GIVVQCQNDRSQHRNRA+AW+ML+++L+ELELRKRM+EQQKLEDSKTDVGWG Sbjct: 245 VRLTHIPTGIVVQCQNDRSQHRNRADAWEMLKSRLYELELRKRMAEQQKLEDSKTDVGWG 304 Query: 305 HQIRSYVLDQSRIKDLRTNFEMGNTKAVLDGELDGFIAASLKQGV 349 HQIRSYVLD SRIKDLRT+ E GNTKAVLDG+LD FI SLKQGV Sbjct: 305 HQIRSYVLDSSRIKDLRTSHETGNTKAVLDGDLDDFIIESLKQGV 349