BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0143.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspirillum serope... 382 e-104 ref|ZP_08276000.1| Lysyl-tRNA synthetase (class II) [Oxalobacter... 370 e-100 ref|ZP_04578247.1| lysyl-tRNA synthetase [Oxalobacter formigenes... 354 1e-95 ref|YP_001352950.1| lysyl-tRNA synthetase [Janthinobacterium sp.... 349 2e-94 ref|YP_001100488.1| lysyl-tRNA synthetase [Herminiimonas arsenic... 349 3e-94 >ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ64281.1| lysyl-tRNA synthetase (Class II) protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/229 (82%), Positives = 203/229 (88%), Gaps = 3/229 (1%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTTQN AAQP DEN+IIAERRAKL AIREQG+AFPNDFRP + AA LHA+YD + Sbjct: 1 MTTQNTPAAQP---AADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFE 57 Query: 61 NEALEANPVKVSIAGRMMLKRVMGKASFATLQDASGLRADGRMQLYVTNDVTGEAAHAAF 120 NEALEA PV V++AGRMMLKRVMGKA+FATLQDASG+RADGR+QLY+T DVTGE A AAF Sbjct: 58 NEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYITRDVTGEEAMAAF 117 Query: 121 KHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYVD 180 KHYDLGDILGAEGTLFKTKTGELSVKVT L+LITKSLRPLPDKFHGL+DQE KYRQRYVD Sbjct: 118 KHYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVD 177 Query: 181 LIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 LIMSEETRRTFKARTAAMSSIRRFME + FMEVETPMLH IPGGA P Sbjct: 178 LIMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKP 226 >ref|ZP_08276000.1| Lysyl-tRNA synthetase (class II) [Oxalobacteraceae bacterium IMCC9480] gb|EGF30527.1| Lysyl-tRNA synthetase (class II) [Oxalobacteraceae bacterium IMCC9480] Length = 510 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/229 (79%), Positives = 199/229 (86%), Gaps = 2/229 (0%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTT + AA P DE++I+AERR+KL AIR GIAFPNDFRP+H AAALH Q+D LD Sbjct: 1 MTTTTEVAAGLPAP--DEHSILAERRSKLAAIRAAGIAFPNDFRPQHKAAALHLQFDVLD 58 Query: 61 NEALEANPVKVSIAGRMMLKRVMGKASFATLQDASGLRADGRMQLYVTNDVTGEAAHAAF 120 NEAL+A PVKV +AGRMMLKRVMGKASFATLQDASG+RADGR+QLY+TND G AH AF Sbjct: 59 NEALDATPVKVVVAGRMMLKRVMGKASFATLQDASGVRADGRIQLYITNDNVGADAHDAF 118 Query: 121 KHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYVD 180 KHYDLGDILGAEG LFKTKTGELS+KVT LRLITKSLRPLPDKFHGL+DQE KYRQRYVD Sbjct: 119 KHYDLGDILGAEGLLFKTKTGELSIKVTALRLITKSLRPLPDKFHGLADQEMKYRQRYVD 178 Query: 181 LIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 LIMSEETRRTFKARTA MSSIRRFM +++FMEVETPMLHTIPGGA P Sbjct: 179 LIMSEETRRTFKARTATMSSIRRFMNEHEFMEVETPMLHTIPGGAAAKP 227 >ref|ZP_04578247.1| lysyl-tRNA synthetase [Oxalobacter formigenes OXCC13] gb|EEO29220.1| lysyl-tRNA synthetase [Oxalobacter formigenes OXCC13] Length = 511 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 170/229 (74%), Positives = 199/229 (86%), Gaps = 1/229 (0%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTTQ N +P P DEN+I+AERRAKL A+REQG+A+PNDFRP++ A +HAQYD +D Sbjct: 1 MTTQTQNN-EPAAPAQDENSIMAERRAKLAALREQGVAYPNDFRPKNKADDIHAQYDGMD 59 Query: 61 NEALEANPVKVSIAGRMMLKRVMGKASFATLQDASGLRADGRMQLYVTNDVTGEAAHAAF 120 NEALEA ++V +AGRMMLKRVMGKASFATLQDASGL+A+GR+QL+++ND TG+ AH AF Sbjct: 60 NEALEAAKIEVCVAGRMMLKRVMGKASFATLQDASGLQANGRIQLFLSNDATGKEAHDAF 119 Query: 121 KHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYVD 180 K YD+GDILGA GTLFKT+TGELSV+V+ +RLITKS+RPLPDKFHGLSDQE KYRQRYVD Sbjct: 120 KRYDIGDILGATGTLFKTRTGELSVRVSEVRLITKSVRPLPDKFHGLSDQELKYRQRYVD 179 Query: 181 LIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 LIMSEETR+TFKARTAA++SIRRFM N FMEVETPMLH IPGGA P Sbjct: 180 LIMSEETRKTFKARTAAIASIRRFMGDNGFMEVETPMLHAIPGGAAAKP 228 >ref|YP_001352950.1| lysyl-tRNA synthetase [Janthinobacterium sp. Marseille] sp|A6SXF3.1|SYK_JANMA RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA ligase; Short=LysRS gb|ABR88694.1| lysyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 511 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 175/230 (76%), Positives = 195/230 (84%), Gaps = 3/230 (1%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTT ND+AA P DEN IIAERRAKL+A+REQGIAFPNDFRP+H AA LH +YD Sbjct: 1 MTTHNDDAAAAL--PQDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLHEKYDGKT 58 Query: 61 NEALEANPVKVSIAGRMMLKRVMGK-ASFATLQDASGLRADGRMQLYVTNDVTGEAAHAA 119 E LEA PV V++AGRMMLKR GK A+FATLQDASG +ADGR+Q+Y T D+TGEAA AA Sbjct: 59 REELEAEPVTVTLAGRMMLKREAGKKAAFATLQDASGAKADGRIQIYATLDLTGEAAMAA 118 Query: 120 FKHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYV 179 HYDLGDILG GTLFKTKT EL++KVT LRL+TKSLRPLPDKFHGL+DQETKYRQRYV Sbjct: 119 LHHYDLGDILGVVGTLFKTKTDELTIKVTELRLLTKSLRPLPDKFHGLADQETKYRQRYV 178 Query: 180 DLIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 DLIM+E+TRRTFKARTAA+SSIRRFM +NDFMEVETPMLHTIPGGA P Sbjct: 179 DLIMNEDTRRTFKARTAAISSIRRFMAENDFMEVETPMLHTIPGGAAAKP 228 >ref|YP_001100488.1| lysyl-tRNA synthetase [Herminiimonas arsenicoxydans] sp|A4G778.1|SYK_HERAR RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA ligase; Short=LysRS emb|CAL62365.1| Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS) [Herminiimonas arsenicoxydans] Length = 511 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 174/230 (75%), Positives = 195/230 (84%), Gaps = 3/230 (1%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTT ND+AA P+DEN IIAERRAKL+A+REQGIAFPNDFRP+H AA L +Y Sbjct: 1 MTTHNDDAAASL--PIDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLQEKYGSKT 58 Query: 61 NEALEANPVKVSIAGRMMLKRVMGK-ASFATLQDASGLRADGRMQLYVTNDVTGEAAHAA 119 E LEA PV V +AGRMMLKR GK A+FATLQDASG +ADGR+Q+YVT ++TGEAA AA Sbjct: 59 REELEAEPVTVVLAGRMMLKREAGKKAAFATLQDASGSKADGRIQIYVTLNLTGEAAMAA 118 Query: 120 FKHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYV 179 HYDLGDILG GTLFKTKT EL++KV+ LRLITKSLRPLPDKFHGL+DQETKYRQRYV Sbjct: 119 LHHYDLGDILGVSGTLFKTKTDELTIKVSELRLITKSLRPLPDKFHGLADQETKYRQRYV 178 Query: 180 DLIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 DLIM+E+TRRTFKARTAA+SSIRRFME+NDFMEVETPMLHTIPGGA P Sbjct: 179 DLIMNEDTRRTFKARTAAISSIRRFMERNDFMEVETPMLHTIPGGAAAKP 228