BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0136.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004750876.1| putative amino-acid-binding periplasmic, ABC... 336 2e-90 ref|YP_004753289.1| putative amino-acid-binding periplasmic (pbp... 300 1e-79 ref|YP_004754628.1| putative amino-acid-binding periplasmic (pbp... 272 5e-71 ref|YP_003746299.1| glutamate/aspartate ABC transport protein hi... 263 2e-68 emb|CAQ37518.1| amino-acid-binding periplasmic protein (pbp) [Ra... 263 3e-68 >ref|YP_004750876.1| putative amino-acid-binding periplasmic, ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK60053.1| putative amino-acid-binding periplasmic, ABC transporter protein [Collimonas fungivorans Ter331] Length = 299 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 149/291 (51%), Positives = 218/291 (74%), Gaps = 10/291 (3%) Query: 9 LFFLLVLLSGAIASTASAYDTTKKIRETKTIVLSFMGSVDNLSPFVVIEPDGEVSGYTIE 68 LFF+L L+ A+A DT KIR+++TI ++ + +PF + ++ GY+I+ Sbjct: 16 LFFILAPLA------ATAGDTLGKIRDSQTITFAYRQT----APFSYTNDNKQIVGYSID 65 Query: 69 LCRKIIQGIRQELRMPDLKIQYLPVNASSRFSALLDNRADLECSVSTNNAERRKKVAFTI 128 LC+KI +++EL++P+LK+QYLPV++S+RFS+++D +ADLEC +TNNAERR +V FT+ Sbjct: 66 LCQKIADAVKRELKLPNLKVQYLPVDSSTRFSSIIDGKADLECGSTTNNAERRTRVGFTV 125 Query: 129 PHFFTSVRMLVKAGSSIKNWSDLRNKRLVTTRATAMIDVINKRSNIRYLDLTVLELENDR 188 PHFF+SVRM+VK GS IKNWSDLRNK +V T++T ID++N RSN+R L++ VLE ++D Sbjct: 126 PHFFSSVRMVVKNGSGIKNWSDLRNKTMVITKSTTTIDLVNDRSNVRSLNIKVLEAQDDA 185 Query: 189 ECFSMLEHGMADAFIMDEILLYGARENAVDPEKFIIVGTPLSVEPYAIMMRNDDPEFKKM 248 E F+ +E G ADA+ MD++LLY R A +P + I+G PLS+EPY++M+R DDP FKK+ Sbjct: 186 ESFAFVEQGKADAYAMDDVLLYSLRSTAKNPADYTILGDPLSIEPYSLMLRKDDPAFKKV 245 Query: 249 VDRQMARLANSGEIYRLYNRWFMQAIGPDKRSLDMPMSYILRDSLRYPTDK 299 VD++M RL N GE+ ++Y+ WF Q GP +L+MPM Y+LRDSL+YP+DK Sbjct: 246 VDQEMVRLINEGELKKIYSYWFTQPNGPKGSNLNMPMGYLLRDSLQYPSDK 296 >ref|YP_004753289.1| putative amino-acid-binding periplasmic (pbp) ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK62466.1| putative amino-acid-binding periplasmic (pbp) ABC transporter protein [Collimonas fungivorans Ter331] Length = 303 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 144/296 (48%), Positives = 207/296 (69%), Gaps = 3/296 (1%) Query: 7 FILFFLLVLLSGAIASTASAYDTTKKIRETKTIVLSFMGSVDNLSPFVVIEPDGEVSGYT 66 + LF ++L S + A A T KIR+T+T+ +++ + +PF ++ D + G+T Sbjct: 11 YSLFGTMLLSSLLFSPEAIAGATMAKIRDTQTVTVAYR---ETTAPFSYLDADKKPIGFT 67 Query: 67 IELCRKIIQGIRQELRMPDLKIQYLPVNASSRFSALLDNRADLECSVSTNNAERRKKVAF 126 I+LC KII+GIRQEL++P LK+ Y+ V S+R +A+ +ADLEC +TNNAERRK+VAF Sbjct: 68 IDLCSKIIEGIRQELKLPQLKVAYMAVTPSTRINAIASGQADLECGTTTNNAERRKQVAF 127 Query: 127 TIPHFFTSVRMLVKAGSSIKNWSDLRNKRLVTTRATAMIDVINKRSNIRYLDLTVLELEN 186 T+PHFF VRM V+ S IKNW++LR K +VTT+ T + ++N R+ +R L L +++ + Sbjct: 128 TVPHFFAGVRMAVRTDSGIKNWANLRGKEVVTTKGTTTVKLLNDRNKVRVLALNLVDGTD 187 Query: 187 DRECFSMLEHGMADAFIMDEILLYGARENAVDPEKFIIVGTPLSVEPYAIMMRNDDPEFK 246 E FSMLE G AF+MD+++LYG R N + PE+F IVG PLSVEPYAIM+ DD EFK Sbjct: 188 HAESFSMLEKGQVAAFVMDDVILYGLRANMMHPEEFAIVGDPLSVEPYAIMLTKDDAEFK 247 Query: 247 KMVDRQMARLANSGEIYRLYNRWFMQAIGPDKRSLDMPMSYILRDSLRYPTDKITN 302 VDRQMA + N G+ ++Y++WFM I P +S++MPM Y+LRD++ YPTDKI + Sbjct: 248 AAVDRQMANMQNDGDFRKIYSKWFMSPIPPRGKSMNMPMGYLLRDAILYPTDKIND 303 >ref|YP_004754628.1| putative amino-acid-binding periplasmic (pbp) ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK63805.1| putative amino-acid-binding periplasmic (pbp) ABC transporter protein [Collimonas fungivorans Ter331] Length = 355 Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 128/296 (43%), Positives = 190/296 (64%), Gaps = 6/296 (2%) Query: 9 LFFLLVLLSGAIASTASAYDTTKKIRETKTIVLSFMGSVDNLSPFVVIEPDGEVSGYTIE 68 L +L + G A+ A D KIR++KTI + + + PF ++ D + GY I+ Sbjct: 64 LGMVLAITLGVAATAVHAEDVLTKIRDSKTITIGYR---EASFPFSFVDQDKKPVGYAID 120 Query: 69 LCRKIIQGIRQELRMPDLKIQYLPVNASSRFSALLDNRADLECSVSTNNAERRKKVAFTI 128 LC KI ++Q+L++P L I Y+PV +S+R + + DLEC +TNNAERRK+V+FTI Sbjct: 121 LCLKIADAVKQQLKLPQLNIVYVPVTSSNRIDMIASGKIDLECGSTTNNAERRKQVSFTI 180 Query: 129 PHFFTSVRMLVKAGSSIKNWSDLRNKRLVTTRATAMIDVINKRSNIRYLDLTVLELENDR 188 HF S RMLV+ IKNW DLR+K++ TT+ T + + R +R L++T++E + Sbjct: 181 AHFMASSRMLVRVEDKIKNWPDLRDKKVATTKGTTSVKSLVDRGQVRSLNMTIVEGRDHN 240 Query: 189 ECFSMLEHGMADAFIMDEILLYGARENAVDPEKFIIVGTPLSVEPYAIMMRNDDPEFKKM 248 E F M+E ADAF+MD++LLYG + A DP + IVG PL+ EPYAIM+ D +K + Sbjct: 241 ESFKMVEDKAADAFVMDDVLLYGLKATAKDPAAYAIVGEPLTTEPYAIMLPKGDTSYKAV 300 Query: 249 VDRQMARLANSGEIYRLYNRWFMQAIGPDKRS--LDMPMSYILRDSLRYPTDKITN 302 VDR+M R+ + GEI +LY +WF+ I P K + L+MPM Y+ R+SLR+P+D++ N Sbjct: 301 VDREMGRIIHDGEINKLYTKWFLSPI-PAKNNLVLNMPMGYLFRESLRFPSDQVGN 355 >ref|YP_003746299.1| glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein [Ralstonia solanacearum CFBP2957] emb|CBJ43698.1| glutamate/aspartate transport protein (ABC superfamily, peri_bind) high affinity periplasmic solute-binding protein [Ralstonia solanacearum CFBP2957] Length = 303 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 122/279 (43%), Positives = 182/279 (65%), Gaps = 3/279 (1%) Query: 24 ASAYDTTKKIRETKTIVLSFMGSVDNLSPFVVIEPDGEVSGYTIELCRKIIQGIRQELRM 83 ASA +IR+T T+ +++ S SPF + D + GY ++LC +++ +R EL+ Sbjct: 28 ASATPVLDRIRDTGTVRIAYRESA---SPFSYSDADKKPIGYAVDLCLRVVDKLRTELKR 84 Query: 84 PDLKIQYLPVNASSRFSALLDNRADLECSVSTNNAERRKKVAFTIPHFFTSVRMLVKAGS 143 PDLK+QY+ V SSR +L+ +ADLECS +TNN ERR++VAFTIPH+ +RMLVK S Sbjct: 85 PDLKVQYVQVTPSSRIPTILEGKADLECSTTTNNRERREQVAFTIPHYIAGIRMLVKTSS 144 Query: 144 SIKNWSDLRNKRLVTTRATAMIDVINKRSNIRYLDLTVLELENDRECFSMLEHGMADAFI 203 I W DLR+K +V+T+ T I + + ++ R L + V E++ + F+M+E G ADAF+ Sbjct: 145 GIHKWDDLRDKTVVSTKGTTSIAEMRRLNDSRVLHMKVEEVKEHADAFAMVESGKADAFV 204 Query: 204 MDEILLYGARENAVDPEKFIIVGTPLSVEPYAIMMRNDDPEFKKMVDRQMARLANSGEIY 263 MD++ LY R NA P + +VG ++VEPYAIM+ DPEFK+ VDR M + + Sbjct: 205 MDDVQLYSFRANAKHPMDYTVVGDMMTVEPYAIMLSKSDPEFKRTVDRAMTSIILDYDAE 264 Query: 264 RLYNRWFMQAIGPDKRSLDMPMSYILRDSLRYPTDKITN 302 + Y +WF Q I P+ LDMPM+++LRDS +YP+DK+ + Sbjct: 265 KFYKKWFQQPIPPNSAKLDMPMNFLLRDSFKYPSDKVAD 303 >emb|CAQ37518.1| amino-acid-binding periplasmic protein (pbp) [Ralstonia solanacearum MolK2] Length = 303 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 123/279 (44%), Positives = 182/279 (65%), Gaps = 3/279 (1%) Query: 24 ASAYDTTKKIRETKTIVLSFMGSVDNLSPFVVIEPDGEVSGYTIELCRKIIQGIRQELRM 83 ASA +IR+T T+ +++ S SPF + D + GY ++LC +++ +R EL+ Sbjct: 28 ASATPVLDRIRDTGTVRIAYRESA---SPFSYSDADKKPIGYAVDLCLRVVDKLRTELKR 84 Query: 84 PDLKIQYLPVNASSRFSALLDNRADLECSVSTNNAERRKKVAFTIPHFFTSVRMLVKAGS 143 PDLK+QY+ V SSR +L+ +ADLECS +TNN ERR++VAFTIPH+ +RMLVK S Sbjct: 85 PDLKVQYVLVTPSSRIPTILEGKADLECSTTTNNRERREQVAFTIPHYIAGIRMLVKTSS 144 Query: 144 SIKNWSDLRNKRLVTTRATAMIDVINKRSNIRYLDLTVLELENDRECFSMLEHGMADAFI 203 I W DLR+K +V+T+ T I + + ++ R L + V E++ + F+M+E G ADAF+ Sbjct: 145 GIHKWDDLRDKTVVSTKGTTSIAEMRRLNDSRVLHMKVEEVKEHADAFAMVESGKADAFV 204 Query: 204 MDEILLYGARENAVDPEKFIIVGTPLSVEPYAIMMRNDDPEFKKMVDRQMARLANSGEIY 263 MD++ LY R NA P + +VG ++VEPYAIM+ DPEFK VDR M + + Sbjct: 205 MDDVQLYSFRANAKHPMDYTVVGDMMTVEPYAIMLSKSDPEFKHSVDRAMTAIILDYDAE 264 Query: 264 RLYNRWFMQAIGPDKRSLDMPMSYILRDSLRYPTDKITN 302 +LY +WF Q I P+ LDMPM+++LRDS +YP+DK+ + Sbjct: 265 KLYKKWFQQPIPPNSAKLDMPMNFLLRDSFKYPSDKVAD 303