BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0134.p (425 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776316.1| peptide chain release factor 3 [Herbaspirill... 549 e-154 ref|YP_001352764.1| peptide chain release factor 3 [Janthinobact... 526 e-147 ref|YP_001099253.1| peptide chain release factor 3 [Herminiimona... 523 e-146 ref|ZP_08273293.1| Peptide chain release factor 3 [Oxalobacterac... 514 e-144 ref|YP_004752077.1| peptide chain release factor 3 [Collimonas f... 514 e-143 >ref|YP_003776316.1| peptide chain release factor 3 [Herbaspirillum seropedicae SmR1] gb|ADJ64408.1| peptide chain release factor 3 (RF-3) protein [Herbaspirillum seropedicae SmR1] Length = 530 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/272 (96%), Positives = 269/272 (98%) Query: 23 LIAREVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK 82 +IAREV RRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK Sbjct: 1 MIAREVKRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIEK 60 Query: 83 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI 142 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI Sbjct: 61 QRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQTI 120 Query: 143 KLLNVCRMRNTPIITFMNKMDRETRDPLELLDELESVLKIQCAPVTWPIGMGKNFRGVYH 202 KLLNVCRMRNTPIITFMNK+DRETRD LELLDELESVLKIQCAPVTWPIGMGKNFRGVYH Sbjct: 121 KLLNVCRMRNTPIITFMNKLDRETRDSLELLDELESVLKIQCAPVTWPIGMGKNFRGVYH 180 Query: 203 LLRDEIMLFKAGEERADGNVEIIKGIDNPKLVEMFPLEIEQLKMEVELVHGASHPFNLDE 262 LLRDEIMLFKAGEERA+GNVEIIKGIDNPKL EMFPLEIEQLKMEVELVHGASHPFNLD+ Sbjct: 181 LLRDEIMLFKAGEERANGNVEIIKGIDNPKLAEMFPLEIEQLKMEVELVHGASHPFNLDD 240 Query: 263 FLAGIQTPVFFGSAINNFGVREILNALLDWAP 294 FLAG+QTPVFFGSAINNFGVREIL+ALLDWAP Sbjct: 241 FLAGVQTPVFFGSAINNFGVREILDALLDWAP 272 >ref|YP_001352764.1| peptide chain release factor 3 [Janthinobacterium sp. Marseille] gb|ABR88278.1| peptide chain release factor RF-3 [Janthinobacterium sp. Marseille] Length = 556 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 259/300 (86%), Positives = 270/300 (90%), Gaps = 1/300 (0%) Query: 5 TPDSANDDSGSTSKAPLELIAREVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTV 64 T DSA ++ +LI EVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTV Sbjct: 9 TSDSAETEAFEPRTVSSDLINSEVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTV 68 Query: 65 KARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAV 124 K RKSGRHATSDWM+IEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAV Sbjct: 69 KGRKSGRHATSDWMDIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAV 128 Query: 125 DSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKMDRETRDPLELLDELESVLKIQC 184 DSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNK+DRETRDPLELLDELESVLKI+C Sbjct: 129 DSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKLDRETRDPLELLDELESVLKIEC 188 Query: 185 APVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERADGNVEIIKGIDNPKLVEMFPLEIEQL 244 APVTWPIGMGKNFRGVYHLLRDEIMLF AG E+AD E+IKGIDNP+L EMFP EIEQL Sbjct: 189 APVTWPIGMGKNFRGVYHLLRDEIMLFAAGNEKADQTFEVIKGIDNPRLAEMFPQEIEQL 248 Query: 245 KMEVELVHGASHPFNLDEFLAGIQTPVFFGSAINNFGVREILNALLDWA-PMIERGAVLR 303 KMEVELVHGASHPF LD FL G +TPVFFGSAINNFGVREILNALLDWA P ER A +R Sbjct: 249 KMEVELVHGASHPFELDAFLNGTRTPVFFGSAINNFGVREILNALLDWAQPPRERDATVR 308 >ref|YP_001099253.1| peptide chain release factor 3 [Herminiimonas arsenicoxydans] emb|CAL61126.1| peptide chain release factor 3 (RF-3) [Herminiimonas arsenicoxydans] Length = 564 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 261/313 (83%), Positives = 273/313 (87%), Gaps = 14/313 (4%) Query: 5 TPDS-ANDDSGSTSK------------APLELIAREVARRRTFGIISHPDAGKTTLTEKL 51 TP+S +DDS ST ELIA EVARRRTFGIISHPDAGKTTLTEKL Sbjct: 4 TPESPTSDDSASTDSAIASESAAEARAVSAELIASEVARRRTFGIISHPDAGKTTLTEKL 63 Query: 52 LLFSGAIQLAGTVKARKSGRHATSDWMEIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQ 111 LLFSGAIQLAGTVK RKS RHATSDWM+IEKQRGISVASSVMQFEYRDHVVNLLDTPGHQ Sbjct: 64 LLFSGAIQLAGTVKGRKSARHATSDWMDIEKQRGISVASSVMQFEYRDHVVNLLDTPGHQ 123 Query: 112 DFSEDTYRVLTAVDSALMVIDAAKGVEEQTIKLLNVCRMRNTPIITFMNKMDRETRDPLE 171 DFSEDTYRVLTAVDSALMVIDAAKGVE QTIKLLNVCRMRNTPIITFMNK+DRETRDPLE Sbjct: 124 DFSEDTYRVLTAVDSALMVIDAAKGVETQTIKLLNVCRMRNTPIITFMNKLDRETRDPLE 183 Query: 172 LLDELESVLKIQCAPVTWPIGMGKNFRGVYHLLRDEIMLFKAGEERADGNVEIIKGIDNP 231 LLDELESVLKI+CAPVTWPIGMGKNFRGVYHLLRDEIMLF G E+AD E++KGIDNP Sbjct: 184 LLDELESVLKIECAPVTWPIGMGKNFRGVYHLLRDEIMLFAPGSEKADQTFEVVKGIDNP 243 Query: 232 KLVEMFPLEIEQLKMEVELVHGASHPFNLDEFLAGIQTPVFFGSAINNFGVREILNALLD 291 +L EMFP EIEQLKMEVELVHGASHPF+LD FL G +TPVFFGSAINNFGVREILNALLD Sbjct: 244 RLAEMFPQEIEQLKMEVELVHGASHPFDLDAFLNGTRTPVFFGSAINNFGVREILNALLD 303 Query: 292 WA-PMIERGAVLR 303 WA P ER A +R Sbjct: 304 WAQPPRERDATVR 316 >ref|ZP_08273293.1| Peptide chain release factor 3 [Oxalobacteraceae bacterium IMCC9480] gb|EGF33220.1| Peptide chain release factor 3 [Oxalobacteraceae bacterium IMCC9480] Length = 406 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 250/273 (91%), Positives = 256/273 (93%) Query: 22 ELIAREVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIE 81 ELI RE RRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIE Sbjct: 29 ELIRREGGRRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEIE 88 Query: 82 KQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQT 141 KQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE QT Sbjct: 89 KQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVETQT 148 Query: 142 IKLLNVCRMRNTPIITFMNKMDRETRDPLELLDELESVLKIQCAPVTWPIGMGKNFRGVY 201 IKLLNVCRMR+TPIITFMNKMDRETRDPLELLDELESVL IQCAPVTWPIGMGK FRGVY Sbjct: 149 IKLLNVCRMRSTPIITFMNKMDRETRDPLELLDELESVLDIQCAPVTWPIGMGKAFRGVY 208 Query: 202 HLLRDEIMLFKAGEERADGNVEIIKGIDNPKLVEMFPLEIEQLKMEVELVHGASHPFNLD 261 HLLRDEI+LF G+ RAD E+IKGIDNP+L EMFP EIEQLKMEVELVHGASHPF+L Sbjct: 209 HLLRDEILLFSPGDARADQEFEVIKGIDNPRLAEMFPREIEQLKMEVELVHGASHPFDLA 268 Query: 262 EFLAGIQTPVFFGSAINNFGVREILNALLDWAP 294 FLAG QTPVFFGSAINNFGVREILNALLDWAP Sbjct: 269 AFLAGTQTPVFFGSAINNFGVREILNALLDWAP 301 >ref|YP_004752077.1| peptide chain release factor 3 [Collimonas fungivorans Ter331] gb|AEK61254.1| Peptide chain release factor 3 [Collimonas fungivorans Ter331] Length = 559 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 249/284 (87%), Positives = 263/284 (92%), Gaps = 1/284 (0%) Query: 21 LELIAREVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKARKSGRHATSDWMEI 80 +E IA EVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVK RKSGRHATSDWM+I Sbjct: 28 VEQIATEVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKGRKSGRHATSDWMDI 87 Query: 81 EKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQ 140 EKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE Q Sbjct: 88 EKQRGISVASSVMQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVETQ 147 Query: 141 TIKLLNVCRMRNTPIITFMNKMDRETRDPLELLDELESVLKIQCAPVTWPIGMGKNFRGV 200 TIKLLNVCRMRNTPIIT MNKMDRETRDPLELLDELESVLKIQCAPVTWPIGMGK FRGV Sbjct: 148 TIKLLNVCRMRNTPIITLMNKMDRETRDPLELLDELESVLKIQCAPVTWPIGMGKTFRGV 207 Query: 201 YHLLRDEIMLFKAGEERADGNVEIIKGIDNPKLVEMFPLEIEQLKMEVELVHGASHPFNL 260 YHLLRDEI+LF AG ++AD E+IKGIDNP+L EMFP EIEQL+MEVELVHGASHPF+ Sbjct: 208 YHLLRDEILLFAAGNDKADQTFEVIKGIDNPRLDEMFPREIEQLRMEVELVHGASHPFDQ 267 Query: 261 DEFLAGIQTPVFFGSAINNFGVREILNALLDWA-PMIERGAVLR 303 + FLAG+QTPVFFGSAINNFG+REILNAL+DWA P R A +R Sbjct: 268 EAFLAGVQTPVFFGSAINNFGIREILNALIDWAQPPGSRDATVR 311