BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0130.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775306.1| periplasmic serine protease [Herbaspirillum ... 540 e-151 ref|YP_004753538.1| putative signal peptide peptidase [Collimona... 508 e-142 ref|ZP_08272643.1| Peptidase S49 [Oxalobacteraceae bacterium IMC... 474 e-131 ref|YP_001100348.1| putative signal peptide peptidase [Herminiim... 462 e-128 ref|YP_001353040.1| U7 family peptidase [Janthinobacterium sp. M... 446 e-123 >ref|YP_003775306.1| periplasmic serine protease [Herbaspirillum seropedicae SmR1] gb|ADJ63398.1| periplasmic serine protease (ClpP class) protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 264/350 (75%), Positives = 301/350 (86%), Gaps = 11/350 (3%) Query: 1 MSNNEFENPAAQP----PKPAEPVPPTTGTATAVAAEEKKGGWERDVLEKLALFAVKEQR 56 MSNNE E+P +QP P P+ +P A ++KK GWERDVLEKLALFAVKEQR Sbjct: 1 MSNNESEHPESQPQSTPPAPSSSIP-------ASVRDDKKSGWERDVLEKLALFAVKEQR 53 Query: 57 ARRRWSIFFKIAGLAVFVFVIWSAFNYTKSESEPVGTHTALVEISGTIEAEGRGSAAAVI 116 ARRRW +FF+IA LAV V +W AF + + E+EP+G HTALVEI G I++EG+GSA VI Sbjct: 54 ARRRWGVFFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSAGVVI 113 Query: 117 PALDKAFAADDSLGVILKINSPGGSPVQAGMINDEIVRLRKEYPKKPLYVVVEEMCASGG 176 PALDKAFAA+DS+GVILKINSPGGSPVQAGMINDEI RLRK+YPKKP+YVVVEE+CASGG Sbjct: 114 PALDKAFAANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCASGG 173 Query: 177 YYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGENKGFLDPFSAQN 236 YYIAAAADKI+VNKAS+VGS+GVLMDGFGFTGLMDK+GVERRLLTAGENK FLDPFS Q+ Sbjct: 174 YYIAAAADKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQS 233 Query: 237 PKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKETPETFSGLFWTGSKAVEMGLADGFGTVD 296 PKQ+EYAQ ML EIHQQFI+VVR+GRG RLKETP+TFSGL WTGSKAVE+GLADGFGTVD Sbjct: 234 PKQREYAQSMLQEIHQQFIEVVRQGRGARLKETPDTFSGLVWTGSKAVELGLADGFGTVD 293 Query: 297 SVARDVIKAEDLVDYTQTEGLPERVLKKFGVAVGSGVAKSMVGSNGLQLR 346 SVARD IKAED+VDYTQTE L ERVLKKFGVA G+G AK+++ S+ QLR Sbjct: 294 SVARDEIKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKTVMSSSLPQLR 343 >ref|YP_004753538.1| putative signal peptide peptidase [Collimonas fungivorans Ter331] gb|AEK62715.1| putative signal peptide peptidase [Collimonas fungivorans Ter331] Length = 325 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/337 (74%), Positives = 281/337 (83%), Gaps = 21/337 (6%) Query: 1 MSNNEFENPAAQPPKPAEPVPPTTGTATAVAAEEKKGGWERDVLEKLALFAVKEQRARRR 60 MSNN+FEN A PV KK GWER+VLEKLA +++EQRARRR Sbjct: 1 MSNNDFENAAT-------PV--------------KKEGWEREVLEKLAFASLREQRARRR 39 Query: 61 WSIFFKIAGLAVFVFVIWSAFNYTKSESEPVGTHTALVEISGTIEAEGRGSAAAVIPALD 120 W IFFK+ + + VF +W NY S+++ VG HTALV+I+G IE+EG GSA V+PALD Sbjct: 40 WGIFFKLTVIGLIVFGVWLGMNYEGSDTQTVGAHTALVKINGAIESEGNGSAGVVVPALD 99 Query: 121 KAFAADDSLGVILKINSPGGSPVQAGMINDEIVRLRKEYPKKPLYVVVEEMCASGGYYIA 180 AFAADDS+GVIL+INSPGGSPVQAG+INDEI RLRKEYP KPLYVVV+EMCASGGYYIA Sbjct: 100 NAFAADDSVGVILRINSPGGSPVQAGIINDEIARLRKEYPNKPLYVVVDEMCASGGYYIA 159 Query: 181 AAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGENKGFLDPFSAQNPKQK 240 AAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGENKGFLDPFS + QK Sbjct: 160 AAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGENKGFLDPFSPMSATQK 219 Query: 241 EYAQQMLNEIHQQFIDVVRKGRGQRLKETPETFSGLFWTGSKAVEMGLADGFGTVDSVAR 300 YAQ ML EIHQQFIDVVRKGRG RLKETPETFSGLFW+GSKAVEMGLADG+GTVDSVAR Sbjct: 220 GYAQTMLAEIHQQFIDVVRKGRGARLKETPETFSGLFWSGSKAVEMGLADGYGTVDSVAR 279 Query: 301 DVIKAEDLVDYTQTEGLPERVLKKFGVAVGSGVAKSM 337 DV+K ED+VDYT++EGLPERVLKKFGVA+G+GV +S+ Sbjct: 280 DVLKQEDIVDYTKSEGLPERVLKKFGVAMGAGVVQSL 316 >ref|ZP_08272643.1| Peptidase S49 [Oxalobacteraceae bacterium IMCC9480] gb|EGF33895.1| Peptidase S49 [Oxalobacteraceae bacterium IMCC9480] Length = 313 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 235/312 (75%), Positives = 270/312 (86%), Gaps = 1/312 (0%) Query: 36 KGGWERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSAFNYTKSESEPVGTHT 95 K GWERDV+EKLA A++EQRARRRW IFF++A LA VF IW+ ++ K+++E + THT Sbjct: 2 KDGWERDVIEKLAYEALREQRARRRWGIFFRLATLAAVVFGIWAFVSFGKTDTEVLTTHT 61 Query: 96 ALVEISGTIEAEGRGSAAA-VIPALDKAFAADDSLGVILKINSPGGSPVQAGMINDEIVR 154 AL++I GTIE+ G +A VIPAL+KA+A ++G+IL+INSPGGSPVQAGMINDEI R Sbjct: 62 ALIDIDGTIESGGGSGSAESVIPALNKAYADTAAVGIILRINSPGGSPVQAGMINDEIGR 121 Query: 155 LRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVG 214 L K YPKKPLYVVV+EMCASGGYYIA AADKI+VNKASIVGSIGVLMDGFGFTGLMDKVG Sbjct: 122 LHKLYPKKPLYVVVDEMCASGGYYIAVAADKIFVNKASIVGSIGVLMDGFGFTGLMDKVG 181 Query: 215 VERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKETPETFS 274 VERRL TAG NKGF+DPFS Q+ KQK YAQ+ML+EIHQQFIDVVRKGRG+RLKETPETFS Sbjct: 182 VERRLQTAGVNKGFMDPFSPQSEKQKAYAQEMLDEIHQQFIDVVRKGRGKRLKETPETFS 241 Query: 275 GLFWTGSKAVEMGLADGFGTVDSVARDVIKAEDLVDYTQTEGLPERVLKKFGVAVGSGVA 334 GLFWTG+KAVEMGLADGFGT+DSVARD KAED+VDYTQ EGLPERVLKKFG A+G+G Sbjct: 242 GLFWTGTKAVEMGLADGFGTIDSVARDEFKAEDVVDYTQHEGLPERVLKKFGAAMGAGAM 301 Query: 335 KSMVGSNGLQLR 346 KS+V GLQL Sbjct: 302 KSIVSGAGLQLH 313 >ref|YP_001100348.1| putative signal peptide peptidase [Herminiimonas arsenicoxydans] emb|CAL62225.1| Putative peptidase S49 [Herminiimonas arsenicoxydans] Length = 334 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 228/326 (69%), Positives = 262/326 (80%), Gaps = 2/326 (0%) Query: 21 PPTTGTATAVAAEEKKGGWERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSA 80 PP+ AT A KK GWER+VLEKLA +KEQRARRRW IFFK L + F +W++ Sbjct: 11 PPSWQAATP--AIPKKEGWEREVLEKLAFATIKEQRARRRWGIFFKFTTLLLIAFALWTS 68 Query: 81 FNYTKSESEPVGTHTALVEISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGG 140 F + S+ E VG HTAL++I GTIEA+G G A VI AL KA+A S+G+IL+INSPGG Sbjct: 69 FGPSVSDMENVGPHTALIKIEGTIEAKGAGDAETVISALTKAYADPGSVGLILQINSPGG 128 Query: 141 SPVQAGMINDEIVRLRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVL 200 SPVQAG+INDEI RLRK+YPKKPLYVVV E+CASGGYYIA+AAD+IYVNKASIVGSIGVL Sbjct: 129 SPVQAGIINDEITRLRKKYPKKPLYVVVNEICASGGYYIASAADRIYVNKASIVGSIGVL 188 Query: 201 MDGFGFTGLMDKVGVERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRK 260 MDGFGFTG M+K+GVERRLLTAGENKGFLDPFS Q KQKEYAQ MLNEIHQQFIDVVR Sbjct: 189 MDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQTEKQKEYAQGMLNEIHQQFIDVVRT 248 Query: 261 GRGQRLKETPETFSGLFWTGSKAVEMGLADGFGTVDSVARDVIKAEDLVDYTQTEGLPER 320 GRG+RLKETPE FSGLFW+G+K+VE+GLADGFGTV+SVARD KA ++VDYTQ EGL +R Sbjct: 249 GRGKRLKETPEIFSGLFWSGAKSVELGLADGFGTVESVARDEFKATNIVDYTQREGLSDR 308 Query: 321 VLKKFGVAVGSGVAKSMVGSNGLQLR 346 VL+KFG A G KS L+ Sbjct: 309 VLRKFGAAAGESAVKSFAAQTAPSLK 334 >ref|YP_001353040.1| U7 family peptidase [Janthinobacterium sp. Marseille] gb|ABR88514.1| peptidase U7 family [Janthinobacterium sp. Marseille] Length = 334 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/298 (71%), Positives = 250/298 (83%) Query: 29 AVAAEEKKGGWERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSAFNYTKSES 88 + AA KK GWER+VLEKLA +KEQRARRRW IFFK +A+ F +W +F + + Sbjct: 17 STAAAPKKEGWEREVLEKLAFATLKEQRARRRWGIFFKFVTVALIAFALWMSFGPSVGDM 76 Query: 89 EPVGTHTALVEISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGGSPVQAGMI 148 E VG HTAL++I GTIEA+G G A +VI AL KA+A S+G+IL+INSPGGSPVQAG+I Sbjct: 77 ENVGPHTALIKIDGTIEAKGAGDADSVISALTKAYADPGSVGLILQINSPGGSPVQAGII 136 Query: 149 NDEIVRLRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGFTG 208 NDE+ RLRK+YP+KPLYVVV EMCASGGYYIA AAD+IYVNKAS+VGSIGVLMDGFGFTG Sbjct: 137 NDEMTRLRKKYPQKPLYVVVNEMCASGGYYIAVAADRIYVNKASLVGSIGVLMDGFGFTG 196 Query: 209 LMDKVGVERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKE 268 M+K+GVERR+LTAG NKGF+DPFS Q QK YAQ MLNEIHQQFIDVVRKGRG+RLKE Sbjct: 197 TMEKLGVERRMLTAGNNKGFMDPFSPQTETQKHYAQDMLNEIHQQFIDVVRKGRGKRLKE 256 Query: 269 TPETFSGLFWTGSKAVEMGLADGFGTVDSVARDVIKAEDLVDYTQTEGLPERVLKKFG 326 TPETFSGL WTG+K++E+GLADGFGTV+SVARD K+ ++VDYTQ EGL +RVL+KFG Sbjct: 257 TPETFSGLVWTGAKSIELGLADGFGTVESVARDEFKSTNIVDYTQREGLSDRVLRKFG 314