BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0124.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753541.1| ribosomal large subunit pseudouridine syntha... 562 e-158 ref|YP_003775303.1| ribosomal large subunit pseudouridine syntha... 558 e-157 ref|YP_001353037.1| ribosomal large subunit pseudouridine syntha... 555 e-156 ref|YP_001100351.1| 23S rRNA pseudouridylate synthase [Herminiim... 538 e-151 ref|ZP_04576496.1| ribosomal large subunit pseudouridine synthas... 444 e-123 >ref|YP_004753541.1| ribosomal large subunit pseudouridine synthase C [Collimonas fungivorans Ter331] gb|AEK62718.1| Ribosomal large subunit pseudouridine synthase C [Collimonas fungivorans Ter331] Length = 379 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/353 (77%), Positives = 310/353 (87%), Gaps = 19/353 (5%) Query: 1 MKDLARFSG---KTPEKPESPASTQ---------------SAPASP-QVQLLTISEEEAG 41 MKDLARFSG KT +P + A+ + +A A P VQ+LTI+E++AG Sbjct: 9 MKDLARFSGGRVKTRPEPRTQAAGKHKAEPKVAVEQGIQLTAIAPPLAVQMLTIAEDDAG 68 Query: 42 QRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLQDGDILRVPPIRIAEKASA 101 QRIDNFLLR+CKGVPKSHIYRVLRSGEVRVNKGRIDQTYRL +GD++RVPPIRIAEK + Sbjct: 69 QRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLVEGDVIRVPPIRIAEKQTQ 128 Query: 102 AVAPGAEFKILLEDNHLLIIDKPAGVAVHGGSGVSYGVIEQLRASRPDAKFLELVHRLDR 161 AVAPGAEFKILLEDNHLL+IDKPAGVAVHGGSGVSYGVIEQLRA+RP AKFLELVHRLDR Sbjct: 129 AVAPGAEFKILLEDNHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQAKFLELVHRLDR 188 Query: 162 DTSGVLLLAKKRSALTNLHEQIRDGLTDKRYLTLIHGDWKNARQHIKLPLHKYSTAEGER 221 DTSG+LLLAKKRSALTNLHEQ+RDG TDKRYL L+HGDW+N RQH+KLPLHKY+ A+GER Sbjct: 189 DTSGILLLAKKRSALTNLHEQMRDGDTDKRYLVLVHGDWQNERQHVKLPLHKYTAADGER 248 Query: 222 RVRVQEDGQASHTVFSLIRRYGEFALLEAELKTGRTHQIRVHLSASGFPIVGDDKYGDFP 281 RVRVQ DGQASHT+F+LIRRYG++ALLEAELKTGRTHQIRVHLSASGF I GDDKYGDF Sbjct: 249 RVRVQADGQASHTIFNLIRRYGDYALLEAELKTGRTHQIRVHLSASGFAIAGDDKYGDFS 308 Query: 282 LNKALQKADGERVAFRRMFLHAHQISFTHPDSGKTVTLKAGLPPECQRFLKSL 334 LN+ALQKADG+RVA +RMFLHA+QI+F HP++GK VTLKA LPPEC+RFLKSL Sbjct: 309 LNRALQKADGQRVALKRMFLHAYQITFAHPETGKPVTLKAPLPPECERFLKSL 361 >ref|YP_003775303.1| ribosomal large subunit pseudouridine synthase C [Herbaspirillum seropedicae SmR1] gb|ADJ63395.1| ribosomal large subunit pseudouridine synthase C protein [Herbaspirillum seropedicae SmR1] Length = 355 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 271/336 (80%), Positives = 302/336 (89%), Gaps = 4/336 (1%) Query: 1 MKDLARFSGKTPEKPESPASTQSAPAS---PQVQLLTISEEEAGQRIDNFLLRVCKGVPK 57 MKDLARFS E ++ ++++A AS PQVQLLTIS+EEAGQRIDNFLLRVCKGVPK Sbjct: 1 MKDLARFSRGASESAKAAPASRNATASQSVPQVQLLTISDEEAGQRIDNFLLRVCKGVPK 60 Query: 58 SHIYRVLRSGEVRVNKGRIDQTYRLQDGDILRVPPIRIAEKASAAVAPGAEFKILLEDNH 117 SHIYRVLRSGEVRVNKGRIDQTYRL +GD++RVPPIR+AEK V PGAEF+ILLED+H Sbjct: 61 SHIYRVLRSGEVRVNKGRIDQTYRLAEGDVVRVPPIRVAEKQETVV-PGAEFRILLEDSH 119 Query: 118 LLIIDKPAGVAVHGGSGVSYGVIEQLRASRPDAKFLELVHRLDRDTSGVLLLAKKRSALT 177 LL+IDKPAGVAVHGGSGVSYGVIEQLRA+RP AKFLELVHRLDRDTSGVLL+AKKRSALT Sbjct: 120 LLVIDKPAGVAVHGGSGVSYGVIEQLRAARPQAKFLELVHRLDRDTSGVLLIAKKRSALT 179 Query: 178 NLHEQIRDGLTDKRYLTLIHGDWKNARQHIKLPLHKYSTAEGERRVRVQEDGQASHTVFS 237 NLH+Q+R+G TDKRY TL+ GDWKNARQH+KLPL KYST +GERRVRVQ DGQ SHTVFS Sbjct: 180 NLHDQMREGTTDKRYFTLVQGDWKNARQHVKLPLFKYSTPDGERRVRVQADGQPSHTVFS 239 Query: 238 LIRRYGEFALLEAELKTGRTHQIRVHLSASGFPIVGDDKYGDFPLNKALQKADGERVAFR 297 L+RR+G+FALLEAELKTGRTHQIRVHLS+SGFPIVGDDKYGDF LNKALQKADG R+AF+ Sbjct: 240 LLRRFGDFALLEAELKTGRTHQIRVHLSSSGFPIVGDDKYGDFALNKALQKADGRRIAFK 299 Query: 298 RMFLHAHQISFTHPDSGKTVTLKAGLPPECQRFLKS 333 RMFLHA +ISF HP+SG TVTLKAGLP EC FL+S Sbjct: 300 RMFLHAWRISFRHPESGDTVTLKAGLPQECASFLRS 335 >ref|YP_001353037.1| ribosomal large subunit pseudouridine synthase C [Janthinobacterium sp. Marseille] gb|ABR89694.1| ribosomal large subunit pseudouridine synthase C [Janthinobacterium sp. Marseille] Length = 339 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 272/336 (80%), Positives = 299/336 (88%), Gaps = 2/336 (0%) Query: 1 MKDLARFSGKTPEKPESPASTQSAPASP-QVQLLTISEEEAGQRIDNFLLRVCKGVPKSH 59 MKDLA FSGK + S+Q P QVQL+TI++E+AGQRIDNFLLR+CKGVPKSH Sbjct: 1 MKDLAIFSGKEAQTLSPSRSSQVHSQVPAQVQLVTINDEDAGQRIDNFLLRICKGVPKSH 60 Query: 60 IYRVLRSGEVRVNKGRIDQTYRLQDGDILRVPPIRIAEKASAAVAPGAEFKILLEDNHLL 119 IYRVLRSGEVRVNKGRIDQTYRL +GDI+R+PPIRIAEKA + APGAEFKILLEDNHLL Sbjct: 61 IYRVLRSGEVRVNKGRIDQTYRLVEGDIVRIPPIRIAEKAPST-APGAEFKILLEDNHLL 119 Query: 120 IIDKPAGVAVHGGSGVSYGVIEQLRASRPDAKFLELVHRLDRDTSGVLLLAKKRSALTNL 179 +IDKPAGVAVHGGSGVSYGVIEQLRA+RPDAKFLELVHRLDRDTSGVL+LAKKRSALTNL Sbjct: 120 VIDKPAGVAVHGGSGVSYGVIEQLRAARPDAKFLELVHRLDRDTSGVLVLAKKRSALTNL 179 Query: 180 HEQIRDGLTDKRYLTLIHGDWKNARQHIKLPLHKYSTAEGERRVRVQEDGQASHTVFSLI 239 HEQIR G DKRYL L+HGDWKNARQHIKLPLHKY+T EGERRVRVQ DG SHTVF+LI Sbjct: 180 HEQIRGGEPDKRYLVLVHGDWKNARQHIKLPLHKYTTPEGERRVRVQADGMESHTVFNLI 239 Query: 240 RRYGEFALLEAELKTGRTHQIRVHLSASGFPIVGDDKYGDFPLNKALQKADGERVAFRRM 299 +RYG F+LLEAELKTGRTHQIRVHL++SGF I GDDKYGDF LN+ LQKADGERVA +RM Sbjct: 240 QRYGPFSLLEAELKTGRTHQIRVHLASSGFAIAGDDKYGDFALNRDLQKADGERVALKRM 299 Query: 300 FLHAHQISFTHPDSGKTVTLKAGLPPECQRFLKSLE 335 FLHAHQI+F HP+SGK VTL A LPPEC+RFLKSL+ Sbjct: 300 FLHAHQITFIHPESGKPVTLNAPLPPECERFLKSLK 335 >ref|YP_001100351.1| 23S rRNA pseudouridylate synthase [Herminiimonas arsenicoxydans] emb|CAL62228.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine isomerase C) (rRNA pseudouridylate synthase C) [Herminiimonas arsenicoxydans] Length = 326 Score = 538 bits (1385), Expect = e-151, Method: Compositional matrix adjust. Identities = 258/302 (85%), Positives = 281/302 (93%), Gaps = 1/302 (0%) Query: 34 TISEEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLQDGDILRVPPI 93 TISEEEAGQRIDNFLLR+CKGVPKSHIYRVLRSGEVRVNKGRIDQTYRL +GD++R+PPI Sbjct: 22 TISEEEAGQRIDNFLLRICKGVPKSHIYRVLRSGEVRVNKGRIDQTYRLTEGDVVRIPPI 81 Query: 94 RIAEKASAAVAPGAEFKILLEDNHLLIIDKPAGVAVHGGSGVSYGVIEQLRASRPDAKFL 153 RIAEKA + APGAEFKILLEDNHLL+IDKPAGVAVHGGSGVSYGVIEQLRA+RPDAKFL Sbjct: 82 RIAEKAPS-TAPGAEFKILLEDNHLLVIDKPAGVAVHGGSGVSYGVIEQLRAARPDAKFL 140 Query: 154 ELVHRLDRDTSGVLLLAKKRSALTNLHEQIRDGLTDKRYLTLIHGDWKNARQHIKLPLHK 213 ELVHRLDRDTSGVL+LAKKRSALTNLHEQIR G DKRYL L+HGDWKNARQHIKL LHK Sbjct: 141 ELVHRLDRDTSGVLVLAKKRSALTNLHEQIRGGEPDKRYLVLVHGDWKNARQHIKLALHK 200 Query: 214 YSTAEGERRVRVQEDGQASHTVFSLIRRYGEFALLEAELKTGRTHQIRVHLSASGFPIVG 273 YSTA+GERRVRVQ DG SHT+F+LI+RYGEFALLEAELKTGRTHQIRVHL++SGF I G Sbjct: 201 YSTADGERRVRVQADGMESHTIFNLIQRYGEFALLEAELKTGRTHQIRVHLASSGFAIAG 260 Query: 274 DDKYGDFPLNKALQKADGERVAFRRMFLHAHQISFTHPDSGKTVTLKAGLPPECQRFLKS 333 DDKYGDF LN+ LQKA+GERVA +RMFLHAHQI+F HP+SGK VTL A LPPEC+RFLKS Sbjct: 261 DDKYGDFALNRELQKANGERVALKRMFLHAHQITFIHPESGKPVTLNAPLPPECERFLKS 320 Query: 334 LE 335 L+ Sbjct: 321 LK 322 >ref|ZP_04576496.1| ribosomal large subunit pseudouridine synthase C [Oxalobacter formigenes HOxBLS] gb|EEO27458.1| ribosomal large subunit pseudouridine synthase C [Oxalobacter formigenes HOxBLS] Length = 340 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/327 (64%), Positives = 260/327 (79%), Gaps = 1/327 (0%) Query: 9 GKTPEKPESPASTQSAPASPQVQLLTISEEEAGQRIDNFLLRVCKGVPKSHIYRVLRSGE 68 GK + + T QV+L+T +E E GQRIDN+L R KGVPKSH+YR+LRSGE Sbjct: 7 GKVSKNLKKQVDTGDNSQMRQVRLITATENEDGQRIDNYLFRTFKGVPKSHVYRILRSGE 66 Query: 69 VRVNKGRIDQTYRLQDGDILRVPPIRIAEKASAAVAPGAEFKILLEDNHLLIIDKPAGVA 128 +RVNK R+DQTYR++ GDI+R+PP++ AE+ + P A F IL ED+ +L+I+KPAGVA Sbjct: 67 IRVNKKRVDQTYRIRTGDIIRIPPVKTAEQKEKHIPP-AGFDILYEDDSVLVINKPAGVA 125 Query: 129 VHGGSGVSYGVIEQLRASRPDAKFLELVHRLDRDTSGVLLLAKKRSALTNLHEQIRDGLT 188 VHGGSGVSYGVIEQLRA RP AKFLELVHRLD++TSG+L+LAKKRSALT LHEQIRDG Sbjct: 126 VHGGSGVSYGVIEQLRAMRPGAKFLELVHRLDKETSGILVLAKKRSALTRLHEQIRDGSV 185 Query: 189 DKRYLTLIHGDWKNARQHIKLPLHKYSTAEGERRVRVQEDGQASHTVFSLIRRYGEFALL 248 DKRY L+HGDWKN RQH++LPL KY TAEGERRVRV E GQASHT+F++++ Y +F LL Sbjct: 186 DKRYQALVHGDWKNPRQHVRLPLLKYHTAEGERRVRVDESGQASHTIFNVLKHYPDFTLL 245 Query: 249 EAELKTGRTHQIRVHLSASGFPIVGDDKYGDFPLNKALQKADGERVAFRRMFLHAHQISF 308 EAELKTGRTHQIRVHL++SGF I GDDKYGDF LN+ LQK A +RMFLHA++I+F Sbjct: 246 EAELKTGRTHQIRVHLASSGFVIAGDDKYGDFELNRQLQKGKKGEDALKRMFLHAYKITF 305 Query: 309 THPDSGKTVTLKAGLPPECQRFLKSLE 335 HP++GK +T+ A LP EC +LK+LE Sbjct: 306 IHPETGKPLTISAPLPDECIGYLKTLE 332