BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0111.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_04762704.1| conserved hypothetical protein [Acidovorax de...    83   1e-14
ref|YP_004486778.1| hypothetical protein DelCs14_1391 [Delftia s...    81   6e-14
ref|YP_001566238.1| hypothetical protein Daci_5224 [Delftia acid...    80   7e-14
ref|ZP_08872426.1| hypothetical protein VeAt4_07453 [Verminephro...    75   2e-12
ref|YP_987410.1| hypothetical protein Ajs_3211 [Acidovorax sp. J...    75   3e-12

>ref|ZP_04762704.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gb|EER60511.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 127

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 66/101 (65%), Gaps = 4/101 (3%)

Query: 1   MALNWIAAFKLIPWADVVQATPTVVRGAKDLWARTRAGKAKSAIAE--DGATAEPGSP-- 56
           MA  W+AA KL+PW DV++A P +++ A+ L   TR G  ++A     DGA   P +   
Sbjct: 2   MAAGWVAALKLVPWGDVLEAAPQILQAARKLIGATRKGAEEAAAGTLVDGAALPPVAQQL 61

Query: 57  EQLAQRITQLEAEQVDASALINTLAEQNAQLVAAFDNLRNK 97
           E L QR+ +LE EQ++++ALI +LAEQNA++V A D LR +
Sbjct: 62  EHLHQRVARLEQEQLESAALIQSLAEQNARVVQAVDALRAR 102


>ref|YP_004486778.1| hypothetical protein DelCs14_1391 [Delftia sp. Cs1-4]
 gb|AEF88423.1| hypothetical protein DelCs14_1391 [Delftia sp. Cs1-4]
          Length = 132

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 72/130 (55%), Gaps = 14/130 (10%)

Query: 1   MALNWIAAFKLIPWADVVQATPTVVRGAKDLWARTRAGKAKSAIAEDGATAEPGSPE--- 57
           MA++WI A KL+PW DV++ATP VV+ AK+L  +  A  A+   A+  A  EP +P    
Sbjct: 1   MAISWITALKLVPWGDVIEATPQVVKAAKNLLRKKDA--AQELDAQHPAAVEPLAPPRSA 58

Query: 58  -----QLAQ----RITQLEAEQVDASALINTLAEQNAQLVAAFDNLRNKVKLLVAACVLL 108
                QL Q    RI QLE  Q  +  LI  LAEQNAQ+VA    LR   + L  AC +L
Sbjct: 59  GEQALQLIQAQDARIVQLEQSQRQSLELIEKLAEQNAQIVATVGALRTGAQRLAWACAIL 118

Query: 109 ALSSAALWLR 118
            +  A L ++
Sbjct: 119 GVCVAGLLIQ 128


>ref|YP_001566238.1| hypothetical protein Daci_5224 [Delftia acidovorans SPH-1]
 gb|ABX37853.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 132

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 72/130 (55%), Gaps = 14/130 (10%)

Query: 1   MALNWIAAFKLIPWADVVQATPTVVRGAKDLWARTRAGKAKSAIAEDGATAEPGSPE--- 57
           MA++WI A KL+PW DV++ATP VV+ AK+L  +  A  A+   A+  A  EP +P    
Sbjct: 1   MAISWITALKLVPWGDVIEATPQVVKAAKNLLRKKDA--AQELDAQQPAAVEPLAPPRSA 58

Query: 58  -----QLAQ----RITQLEAEQVDASALINTLAEQNAQLVAAFDNLRNKVKLLVAACVLL 108
                QL Q    RI QLE  Q  +  LI  LAEQNAQ+VA    LR   + L  AC +L
Sbjct: 59  GEQALQLIQAQDARIVQLEQSQRQSLELIEKLAEQNAQIVATVGALRTGAQRLAWACAIL 118

Query: 109 ALSSAALWLR 118
            +  A L ++
Sbjct: 119 GVCVAGLLIQ 128


>ref|ZP_08872426.1| hypothetical protein VeAt4_07453 [Verminephrobacter sp. At4]
          Length = 128

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 8/119 (6%)

Query: 5   WIAAFKLIPWADVVQATPTVVRGAKDLWARTRAGKAKSAIA----EDGATAEPGSPE--Q 58
           W    KL+PW  V++ATP V++ A+ L    RAG    + A     DG +A P   +  Q
Sbjct: 4   WFTVLKLVPWGQVIEATPQVLQAARKLLRNRRAGNTAQSTALVQGADGQSALPTDVQLQQ 63

Query: 59  LAQRITQLEAEQVDASALINTLAEQNAQLVAAFDNLRNKVKLLVAACVLLALSSAALWL 117
           L +R+  LE EQ D +ALI +LAEQ AQ+V A + LR + + L  A  +L L +A L L
Sbjct: 64  LRERVRCLEQEQQDCAALIESLAEQTAQVVRAVETLRLRARRLTGA--VLVLGAACLGL 120


>ref|YP_987410.1| hypothetical protein Ajs_3211 [Acidovorax sp. JS42]
 gb|ABM43334.1| conserved hypothetical protein [Acidovorax sp. JS42]
          Length = 121

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 7/96 (7%)

Query: 1  MALNWIAAFKLIPWADVVQATPTVVRGAKDLWARTRAGKAKSAIAEDGATAEPGSPEQLA 60
          MA+ W++A KL+PW DV++ATP +++ A+ L + TR    K+   E  A     +P+QLA
Sbjct: 1  MAVGWMSALKLVPWGDVIEATPQIMQAARKLISNTR----KAPPPEAPAQRIDSTPDQLA 56

Query: 61 ---QRITQLEAEQVDASALINTLAEQNAQLVAAFDN 93
              R+ QLE +Q  ++ALI +LAEQNAQLV A D 
Sbjct: 57 VLQARMAQLEEDQRASAALIKSLAEQNAQLVRAVDG 92