BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0106.p (475 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752987.1| tRNA(Ile)-lysidine synthetase [Collimonas fu... 562 e-158 ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas... 561 e-158 ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium s... 560 e-157 ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacterace... 502 e-140 ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum s... 470 e-130 >ref|YP_004752987.1| tRNA(Ile)-lysidine synthetase [Collimonas fungivorans Ter331] gb|AEK62164.1| tRNA(Ile)-lysidine synthetase [Collimonas fungivorans Ter331] Length = 472 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 284/450 (63%), Positives = 328/450 (72%), Gaps = 14/450 (3%) Query: 33 LADVFPVIA--------VAYSGGLDSSVLLHLAAAFAREQGVRLFAFHIHHGISANADQW 84 +A FP IA VAYSGGLDSSVLLH AA +A G +LFAFHIHHGIS NADQW Sbjct: 20 IAQAFPAIASQQQARLAVAYSGGLDSSVLLHAAAQYAGAHGAQLFAFHIHHGISPNADQW 79 Query: 85 QAHCRAQSERAGAEFDTRNVTLAIKDKSGVEEAARVARYQALGQLCREHGAGLLLTAHHL 144 Q+HC R G FDTR + L DKSGVEEAAR++RY ALG LCR+H LLLT HHL Sbjct: 80 QSHCAEACARLGVVFDTRRIALRNSDKSGVEEAARISRYAALGDLCRQHQIPLLLTGHHL 139 Query: 145 DDQAETVLLQMLRGSGVAGISGMDSANKAAELLGDAGLLMARPLLGAARGELEQYAQQEQ 204 DDQAETVLLQ+LRGSG AG+SGMD N A LLGDA LLMARPLL +R LEQYA +Q Sbjct: 140 DDQAETVLLQLLRGSGAAGLSGMDRWNTAPTLLGDAVLLMARPLLKVSRAALEQYAAAQQ 199 Query: 205 VPFVEDESNSDTRYARNALRHKVMPVLAEFFPGFQERFARAAGHAQAAQRLLTVLASQDL 264 + F+EDESN D RYARNALR +VMPVLA+ FPGFQERF+R+AGH Q QRLL LA+QD+ Sbjct: 200 LTFIEDESNHDPRYARNALRQQVMPVLAQHFPGFQERFSRSAGHMQTTQRLLIDLAAQDM 259 Query: 265 AACLEGEYLNVSALRRLDPERIDNLLRYWLGLRGLRMPSSAWLFELRTQLIDAKYDAQLC 324 A C +G L++ +R+L ERIDNLLRYW GL LRMPSSAWL E+R QL++AK DAQLC Sbjct: 260 AVCADGACLDLEHVRQLSGERIDNLLRYWFGLHHLRMPSSAWLSEMRQQLLEAKADAQLC 319 Query: 325 VTHPDCHVRRYRDRVFLTPRRPPFDENTGPQPFIWRGEDKLHFPQFSGSLFFDVSEVGFD 384 VTHPDCH+RR+R+RVFLTPR PQ F W GE ++ FPQF G L FD +E G D Sbjct: 320 VTHPDCHIRRHRNRVFLTPRDDVDRSEIEPQAFRWNGEAEMRFPQFGGVLHFDQAEQGID 379 Query: 385 AAWLREQSLSVCLRSGGERIRLAWNRPAKSLKYHFQNMDIPAWERPYLPLVFAQEQILYA 444 A WLR QSL + RSGGER++LA NRP KS+KYH+Q D+P WER LPLV + +QIL+A Sbjct: 380 ADWLRAQSLQIQYRSGGERLKLALNRPTKSVKYHYQAFDVPPWERERLPLVSSGKQILFA 439 Query: 445 AGIGMDC-HAQPKPGEESKEHRIALRWQTD 473 AGIGMDC PG I+LRWQ D Sbjct: 440 AGIGMDCLQLAAGPGLH-----ISLRWQAD 464 >ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans] emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS [Herminiimonas arsenicoxydans] Length = 465 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 269/434 (61%), Positives = 333/434 (76%), Gaps = 4/434 (0%) Query: 40 IAVAYSGGLDSSVLLHLAAAFAREQGVRLFAFHIHHGISANADQWQAHCRAQSERAGAEF 99 IA+AYSGGLDS+ LL+L A+A + G+ LFAFH+HHG+S NADQW AHC+ Q G F Sbjct: 34 IAIAYSGGLDSAALLYLLRAYATQHGLELFAFHVHHGLSLNADQWLAHCQQQCAGLGVAF 93 Query: 100 DTRNVTLAIKDKSGVEEAARVARYQALGQLCREHGAGLLLTAHHLDDQAETVLLQMLRGS 159 D R V +A +DKSGVEEAAR +RY ALG++CR H LLLTAHH DDQAETVLLQ+LRGS Sbjct: 94 DARRVQIANQDKSGVEEAARHSRYAALGEMCRAHDVPLLLTAHHQDDQAETVLLQLLRGS 153 Query: 160 GVAGISGMDSANKAAELLGDAGLLMARPLLGAARGELEQYAQQEQVPFVEDESNSDTRYA 219 GVAG+SGMDS N AA+LLGDA LLM RPLL AR +LE+ + FVEDESN D RYA Sbjct: 154 GVAGLSGMDSVNHAADLLGDATLLMGRPLLQLARADLEKIVTSNAIAFVEDESNLDPRYA 213 Query: 220 RNALRHKVMPVLAEFFPGFQERFARAAGHAQAAQRLLTVLASQDLAACLEGEYLNVSALR 279 RNALRH+VMP LA+ FPGFQ+RFAR A HAQ+AQRLL LA+QDL CL+G+ L+++ LR Sbjct: 214 RNALRHQVMPTLAQHFPGFQQRFARTAQHAQSAQRLLIELAAQDLTVCLDGDCLDITKLR 273 Query: 280 RLDPERIDNLLRYWLGLRGLRMPSSAWLFELRTQLIDAKYDAQLCVTHPDCHVRRYRDRV 339 + +RID++LRYW G RG+RMPS++WL E+RTQL++AK+DAQLCVTH DCH+RR+RDRV Sbjct: 274 QFSTDRIDSMLRYWFGSRGVRMPSTSWLNEMRTQLLEAKHDAQLCVTHADCHIRRHRDRV 333 Query: 340 FLTPRRPPFDENTGPQPFIWRGEDKLHFPQFSGSLFFDVSEVGFDAAWLREQSLSVCLRS 399 +LTP+ P P F W G + F +F G+LFF+ +E G A WLR Q+L++ LRS Sbjct: 334 YLTPKLDPASLEQAPLAFRWDGTTAMQFAEFGGTLFFEEAEQGVSAEWLRGQALTMQLRS 393 Query: 400 GGERIRLAWNRPAKSLKYHFQNMDIPAWERPYLPLVFAQEQILYAAGIGMDCHAQPKPGE 459 GGER++ AWNRP KSLKYH+Q D+PAWER LPLVFA++Q+L+AAGIGMDCH+ Sbjct: 394 GGERLKPAWNRPTKSLKYHYQAGDVPAWERERLPLVFAEKQLLFAAGIGMDCHS---FST 450 Query: 460 ESKEHRIALRWQTD 473 ++ H I LRWQ D Sbjct: 451 QAGTH-IQLRWQFD 463 >ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] gb|ABR89105.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] Length = 462 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 272/436 (62%), Positives = 329/436 (75%), Gaps = 4/436 (0%) Query: 40 IAVAYSGGLDSSVLLHLAAAFAREQGVRLFAFHIHHGISANADQWQAHCRAQSERAGAEF 99 IA+AYSGGLDS+ LLHL A+ Q + +FAFH+HHG+S NAD W AHCRAQ G F Sbjct: 26 IALAYSGGLDSAALLHLLHAYGLAQQIEIFAFHVHHGLSPNADDWLAHCRAQCAALGVVF 85 Query: 100 DTRNVTLAIKDKSGVEEAARVARYQALGQLCREHGAGLLLTAHHLDDQAETVLLQMLRGS 159 D R V + + K+G+EEAAR +RY ALG +CR HG LLLTAHHLDDQAETVLLQ+LRGS Sbjct: 86 DARQVQVTRQGKNGIEEAARQSRYAALGDMCRAHGVPLLLTAHHLDDQAETVLLQLLRGS 145 Query: 160 GVAGISGMDSANKAAELLGDAGLLMARPLLGAARGELEQYAQQEQVPFVEDESNSDTRYA 219 GVAG+SGMDSAN AA+LLGDA LLM RPLL R +L+ Y + FVEDESN D RYA Sbjct: 146 GVAGLSGMDSANHAADLLGDANLLMGRPLLQVRREDLQAYVTAHAIQFVEDESNLDPRYA 205 Query: 220 RNALRHKVMPVLAEFFPGFQERFARAAGHAQAAQRLLTVLASQDLAACLEGEYLNVSALR 279 RNALRH+VMP L E+FPGFQ+RFAR A HAQ+AQRLL LA++DL CL+GE ++V+ LR Sbjct: 206 RNALRHQVMPKLEEYFPGFQQRFARTAEHAQSAQRLLIELAAEDLQQCLDGECVDVTKLR 265 Query: 280 RLDPERIDNLLRYWLGLRGLRMPSSAWLFELRTQLIDAKYDAQLCVTHPDCHVRRYRDRV 339 + +RIDN+LRYW GLRG+RMPS+AWL E+RTQL++AK+DAQLCVTH DCH+RR+RDRV Sbjct: 266 QFSADRIDNMLRYWFGLRGVRMPSTAWLNEMRTQLLEAKHDAQLCVTHADCHIRRHRDRV 325 Query: 340 FLTPRRPPFDENTGPQPFIWRGEDKLHFPQFSGSLFFDVSEVGFDAAWLREQSLSVCLRS 399 ++TP+ P P+ F W+GE LHFP F G+L+FD +E G A WL Q+L + LRS Sbjct: 326 YITPKFDPDLLLQPPRSFNWQGEASLHFPSFGGTLYFDQAEQGIAAEWLGAQTLLIQLRS 385 Query: 400 GGERIRLAWNRPAKSLKYHFQNMDIPAWERPYLPLVFAQEQILYAAGIGMDCHAQPKPGE 459 GGER++ AWNRP KSLKY +Q D+PAWER LPLVFA +Q+L+AAGIGMDCH P Sbjct: 386 GGERLKPAWNRPTKSLKYQYQACDVPAWERERLPLVFAGKQLLFAAGIGMDCH----PLN 441 Query: 460 ESKEHRIALRWQTDLG 475 I LRWQ D G Sbjct: 442 TETGGNIQLRWQFDQG 457 >ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32180.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 467 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 256/432 (59%), Positives = 317/432 (73%), Gaps = 5/432 (1%) Query: 40 IAVAYSGGLDSSVLLHLAAAFAREQGVRLFAFHIHHGISANADQWQAHCRAQSERAGAEF 99 +A+AYSGGLDSS LL+LA A++ G+RLFAFH+HHG+SA+AD W HC + R G F Sbjct: 35 LAIAYSGGLDSSALLYLAHRHAQKNGIRLFAFHVHHGLSADADDWLQHCAGECARLGVTF 94 Query: 100 DTRNVTLAIKDKSGVEEAARVARYQALGQLCREHGAGLLLTAHHLDDQAETVLLQMLRGS 159 + V LA SG+E AAR +RY ALG +CR HG LLLTAHH DDQAETVLLQ+LRGS Sbjct: 95 AAQRVQLADTGVSGIEAAARSSRYAALGAMCRAHGVPLLLTAHHQDDQAETVLLQLLRGS 154 Query: 160 GVAGISGMDSANKAAELLGDAGLLMARPLLGAARGELEQYAQQEQVPFVEDESNSDTRYA 219 GVAG+SGMD+AN A +LLGDA L+MARPLL +R +L +E + V+D SN DTRYA Sbjct: 155 GVAGLSGMDTANCAPDLLGDAVLVMARPLLSFSRMQLATLVAKEGITHVDDASNLDTRYA 214 Query: 220 RNALRHKVMPVLAEFFPGFQERFARAAGHAQAAQRLLTVLASQDLAACLEGEYLNVSALR 279 RNALRH+VMP LA+FFPGFQ R AR A HAQ+AQRLL LA+QDLA C G+ L++S LR Sbjct: 215 RNALRHEVMPALAKFFPGFQHRLARTASHAQSAQRLLIELATQDLALCAAGDALDISRLR 274 Query: 280 RLDPERIDNLLRYWLGLRGLRMPSSAWLFELRTQLIDAKYDAQLCVTHPDCHVRRYRDRV 339 L P+R DNLLRYW G RG+RMPS++WL E+RTQL +AK DAQLCVTH DCH+RR+RD V Sbjct: 275 LLSPDRADNLLRYWFGSRGVRMPSTSWLHEMRTQLFEAKPDAQLCVTHADCHIRRHRDHV 334 Query: 340 FLTPRRPPFDENTGPQ-PFIWRGEDKLHFPQFSGSLFFDVSEVGFDAAWLREQSLSVCLR 398 F+TP R FD P F W GE +L FP +GSL F+ +E G A WL Q+L++ LR Sbjct: 335 FITPHRIEFDPEELPVIGFRWSGEAQLDFPDLNGSLMFEAAEQGVAADWLTGQALAISLR 394 Query: 399 SGGERIRLAWNRPAKSLKYHFQNMDIPAWERPYLPLVFAQEQILYAAGIGMDCHAQPKPG 458 SGGER++ A NR ++LKYH+Q ++PAWER LP+V +++L+AAG+GMDCH Sbjct: 395 SGGERLKPAPNRSTRALKYHYQAGNVPAWERERLPVVRVGKKLLFAAGVGMDCHH----F 450 Query: 459 EESKEHRIALRW 470 + E RIALRW Sbjct: 451 SSADEPRIALRW 462 >ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ63382.1| PP-loop superfamily ATPase, implicated in cell cycle control, protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 258/442 (58%), Positives = 312/442 (70%), Gaps = 11/442 (2%) Query: 39 VIAVAYSGGLDSSVLLHLAAAFAREQG--VRLFAFHIHHGISANADQWQAHCRAQSERAG 96 +AVAYSGGLDS+VLL +AA +ARE G RL H+HHG+S +AD W AH +A + G Sbjct: 12 TLAVAYSGGLDSTVLLWVAAQWARENGGTSRLAPLHVHHGLSPHADAWLAHAQACCAQLG 71 Query: 97 AEFDTRNVTLAIKDKSGVEEAARVARYQALGQLCREHGAGLLLTAHHLDDQAETVLLQML 156 + V L SGVEEAAR+ARY ALG+LCR+ GA +LLTAHHLDDQAETVLLQ+L Sbjct: 72 LVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLDDQAETVLLQLL 131 Query: 157 RGSGVAGISGMDSANKAAELLGDAGLLMARPLLGAARGELEQYAQQEQVPFVEDESNSDT 216 RGSG+AG+SGMD N A LLGD LLMARP LG R +LE A + ++EDESNSD Sbjct: 132 RGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSLKWIEDESNSDP 191 Query: 217 RYARNALRHKVMPVLAEFFPGFQERFARAAGHAQAAQRLLTVLASQDLAACLEGEYLNVS 276 RY RNALRH+VMP L + FPG+Q+R ARAAGHAQ AQ LL +A QDLA C E E+L + Sbjct: 192 RYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDEHLRMP 251 Query: 277 ALRRLDPERIDNLLRYWLGLRGLRMPSSAWLFELRTQLIDAKYDAQLCVTHPDCHVRRYR 336 LR L +R NL+R+W GLRG+RMPS+AW+ E+R QL+ A +AQLCV+HPD V RYR Sbjct: 252 PLRELSEQRFLNLMRHWFGLRGMRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHRYR 311 Query: 337 DRVFLTPRRPPFDENTGPQPFIWRGEDKLHFPQFSGSLFFDV-----SEVGFDAAWLREQ 391 +RVFL PRR P DE W G+ + P + G+L FD + GFD AWL+ Q Sbjct: 312 ERVFLAPRRMPPDEGA-VATLRWDGQAQWRLPAWYGTLHFDRIGGDDARPGFDPAWLQGQ 370 Query: 392 SLSVCLRSGGERIRLAWNRPAKSLKYHFQNMDIPAWERPYLPLVFAQEQILYAAGIGMDC 451 SL C RSGGERIRLA NRPA+SLK +Q+ D+PAWERPYLPLV+A E +L+AAGIGMDC Sbjct: 371 SLLACGRSGGERIRLAANRPARSLKQQYQSADVPAWERPYLPLVWAGESLLFAAGIGMDC 430 Query: 452 HAQPKPGEESKEHRIALRWQTD 473 Q P ++ RIALRWQ D Sbjct: 431 -GQFAPSATAQ--RIALRWQPD 449