BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0103.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775287.1| cysteinyl-tRNA synthetase [Herbaspirillum se... 697 0.0 ref|YP_001353798.1| cysteinyl-tRNA synthetase [Janthinobacterium... 667 0.0 ref|YP_004752990.1| cysteinyl-tRNA synthetase [Collimonas fungiv... 665 0.0 ref|YP_001099586.1| cysteinyl-tRNA synthetase [Herminiimonas ars... 655 0.0 gb|EGW61530.1| cysteinyl-tRNA synthetase [Dechlorosoma suillum PS] 639 0.0 >ref|YP_003775287.1| cysteinyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ63379.1| cysteinyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] Length = 463 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/386 (84%), Positives = 354/386 (91%), Gaps = 3/386 (0%) Query: 1 MSTLKIYNTLARDKQAFSPIEPGKVRLYVCGMTVYDYCHLGHARVMVVFDMVQRWLRATG 60 MS LKIYNTLARDKQ FSPIEPGKVRLYVCGMTVYDYCH+GHARV+VVFDMVQRWLRA+G Sbjct: 1 MSELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60 Query: 61 FEVTYVRNITDIDDKIIQRAIENRESIGQLTQRFIDAMDEDSAALGVQKPDHEPRATAYV 120 +EVTYVRNITDIDDKII+RA+EN E+I QLT RFIDAM+ED+AALGVQ+PDHEPRAT YV Sbjct: 61 YEVTYVRNITDIDDKIIKRAVENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATQYV 120 Query: 121 PQMLDLISKLQANGLAYQGSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 PQMLDLI KL+ NGLAY+ SDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP Sbjct: 121 PQMLDLIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 Query: 181 LDFVLWKAAKESEPGEVKWDSPWGKGRPGWHIECSAMASDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWKAAK +EP E KWDSPWG GRPGWHIECSAM+SDLLGDHFDIHGGGQDLQFPHH Sbjct: 181 LDFVLWKAAKPAEPDEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240 Query: 241 ENEIAQSEGAHQHAFVNYWMHNGFIRVDNEKMSKSLGNFFTIRDVLKKYDPEVVRFFILR 300 ENEIAQSEGAHQH FVNYWMHNGF+R+DNEKMSKSLGNFFTIRDVLKKYDPEV+RFFILR Sbjct: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARVALTRLYTALKDVPSEADAAVTVDQSDVYAQRFAEAMNDDFN 360 AHYRSPLNYSDAHLDDAR ALTRLYTALKDVP +A V + +A R A+A+NDDFN Sbjct: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPQAGGLVA---DEAHAVRLADALNDDFN 357 Query: 361 TPMAVAVLFDLANEVNXRRASPPSKQ 386 TP+A+AVLF+LANEVN R+ ++Q Sbjct: 358 TPVAIAVLFELANEVNRSRSPVQARQ 383 >ref|YP_001353798.1| cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] sp|A6SZV1.1|SYC_JANMA RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS gb|ABR88513.1| Cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 464 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/386 (81%), Positives = 343/386 (88%), Gaps = 3/386 (0%) Query: 1 MSTLKIYNTLARDKQAFSPIEPGKVRLYVCGMTVYDYCHLGHARVMVVFDMVQRWLRATG 60 MS LKIYNTLAR+KQ F+PIEPGKVR+YVCGMTVYDYCH+GHARVMVVFD+VQRWLRA+G Sbjct: 1 MSALKIYNTLAREKQPFTPIEPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASG 60 Query: 61 FEVTYVRNITDIDDKIIQRAIENRESIGQLTQRFIDAMDEDSAALGVQKPDHEPRATAYV 120 +EV YVRNITDIDDKII+RA EN ESI LTQRFIDAMDED+AALGVQKPDHEPRAT YV Sbjct: 61 YEVNYVRNITDIDDKIIKRAAENGESISALTQRFIDAMDEDAAALGVQKPDHEPRATNYV 120 Query: 121 PQMLDLISKLQANGLAYQGSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 PQML LI L+ NGLAY+ SDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP Sbjct: 121 PQMLGLIEALERNGLAYKSSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 Query: 181 LDFVLWKAAKESEPGEVKWDSPWGKGRPGWHIECSAMASDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWK++KE+EP EVKW S WG GRPGWHIECSAMA +LLG FDIHGGG DLQFPHH Sbjct: 181 LDFVLWKSSKEAEPDEVKWASKWGSGRPGWHIECSAMACELLGQQFDIHGGGADLQFPHH 240 Query: 241 ENEIAQSEGAHQHAFVNYWMHNGFIRVDNEKMSKSLGNFFTIRDVLKKYDPEVVRFFILR 300 ENEIAQSEGA QH FVNYWMHNGF+RVDNEKMSKSLGNFFTIR+VL KYD EVVRFFILR Sbjct: 241 ENEIAQSEGASQHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLAKYDSEVVRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARVALTRLYTALKDVPSEADAAVTVDQSDVYAQRFAEAMNDDFN 360 AHYRS LNYSDAHLDDAR ALTR+YTALK V + A +D ++ +A RFAEAMNDDFN Sbjct: 301 AHYRSQLNYSDAHLDDARNALTRMYTALKGVAPDQAA---LDMTEAHALRFAEAMNDDFN 357 Query: 361 TPMAVAVLFDLANEVNXRRASPPSKQ 386 TP+AVAVLF+LANE+N ++ ++Q Sbjct: 358 TPLAVAVLFELANEINKTKSPALARQ 383 >ref|YP_004752990.1| cysteinyl-tRNA synthetase [Collimonas fungivorans Ter331] gb|AEK62167.1| Cysteinyl-tRNA synthetase [Collimonas fungivorans Ter331] Length = 473 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/386 (80%), Positives = 346/386 (89%), Gaps = 3/386 (0%) Query: 1 MSTLKIYNTLARDKQAFSPIEPGKVRLYVCGMTVYDYCHLGHARVMVVFDMVQRWLRATG 60 MS LKIYNTLAR+KQ FSPIEPGKVR+YVCGMTVYDYCHLGH RVMVVFDMVQRWLR +G Sbjct: 1 MSDLKIYNTLAREKQPFSPIEPGKVRMYVCGMTVYDYCHLGHGRVMVVFDMVQRWLRQSG 60 Query: 61 FEVTYVRNITDIDDKIIQRAIENRESIGQLTQRFIDAMDEDSAALGVQKPDHEPRATAYV 120 +VTYVRNITDIDDKII+RA+EN E+I QLT RFI AMDED+AALGVQKPDHEPRATA+V Sbjct: 61 LDVTYVRNITDIDDKIIKRAVENGETISQLTGRFIQAMDEDAAALGVQKPDHEPRATAFV 120 Query: 121 PQMLDLISKLQANGLAYQGSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 PQML LI KL+ GLAYQGSDGDVNYSVRDF GYGKLSGKSLDDLRAGERVDVN GKRDP Sbjct: 121 PQMLALIEKLEHKGLAYQGSDGDVNYSVRDFAGYGKLSGKSLDDLRAGERVDVNLGKRDP 180 Query: 181 LDFVLWKAAKESEPGEVKWDSPWGKGRPGWHIECSAMASDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWKAAK+SEP EVKW S WG+GRPGWHIECSAMA LLG+ FDIHGGGQDLQFPHH Sbjct: 181 LDFVLWKAAKDSEPEEVKWTSRWGQGRPGWHIECSAMAEQLLGEQFDIHGGGQDLQFPHH 240 Query: 241 ENEIAQSEGAHQHAFVNYWMHNGFIRVDNEKMSKSLGNFFTIRDVLKKYDPEVVRFFILR 300 ENEIAQSEGAH H FVNYWMHNGF+R+D+EKMSKSLGNFFTIRDVLKKYD EVVRFFILR Sbjct: 241 ENEIAQSEGAHGHRFVNYWMHNGFVRIDDEKMSKSLGNFFTIRDVLKKYDAEVVRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARVALTRLYTALKDVPSEADAAVTVDQSDVYAQRFAEAMNDDFN 360 AHYRSPLNY+D++LDDA+ ALTRLYTALK+V ++ ++ +D S+ +A R A+AM+DDFN Sbjct: 301 AHYRSPLNYADSNLDDAKHALTRLYTALKEVSAD---SLPLDWSEAHAARVAQAMDDDFN 357 Query: 361 TPMAVAVLFDLANEVNXRRASPPSKQ 386 TPMA++ LFDLANEVN R+ ++Q Sbjct: 358 TPMAISALFDLANEVNKNRSQAAARQ 383 >ref|YP_001099586.1| cysteinyl-tRNA synthetase [Herminiimonas arsenicoxydans] sp|A4G4M2.1|SYC_HERAR RecName: Full=Cysteinyl-tRNA synthetase; AltName: Full=Cysteine--tRNA ligase; Short=CysRS emb|CAL61459.1| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Herminiimonas arsenicoxydans] Length = 462 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/389 (78%), Positives = 345/389 (88%), Gaps = 3/389 (0%) Query: 1 MSTLKIYNTLARDKQAFSPIEPGKVRLYVCGMTVYDYCHLGHARVMVVFDMVQRWLRATG 60 MS LKIYNTLAR+KQ F+PI+PGKVR+YVCGMTVYDYCH+GHARVMVVFD+VQRWLRA+G Sbjct: 1 MSALKIYNTLAREKQLFTPIDPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASG 60 Query: 61 FEVTYVRNITDIDDKIIQRAIENRESIGQLTQRFIDAMDEDSAALGVQKPDHEPRATAYV 120 F+VTYVRNITDIDDKII+RA EN E+I QLTQRFIDAMDED+AALGVQKPDHEPRAT YV Sbjct: 61 FDVTYVRNITDIDDKIIKRAAENGETISQLTQRFIDAMDEDAAALGVQKPDHEPRATNYV 120 Query: 121 PQMLDLISKLQANGLAYQGSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180 PQML LI L+ NGLAY+ +DGDVNYSVRDF GYGKLSGKSLDDLRAGERVDVNTGK DP Sbjct: 121 PQMLGLIDMLERNGLAYKAADGDVNYSVRDFAGYGKLSGKSLDDLRAGERVDVNTGKHDP 180 Query: 181 LDFVLWKAAKESEPGEVKWDSPWGKGRPGWHIECSAMASDLLGDHFDIHGGGQDLQFPHH 240 LDFVLWK++KE+EP EVKW S WG GRPGWHIECSAMA +LLG+ FDIHGGG DLQFPHH Sbjct: 181 LDFVLWKSSKENEPEEVKWSSKWGSGRPGWHIECSAMACELLGEQFDIHGGGADLQFPHH 240 Query: 241 ENEIAQSEGAHQHAFVNYWMHNGFIRVDNEKMSKSLGNFFTIRDVLKKYDPEVVRFFILR 300 ENEIAQSEGA H FVNYWMHNGF+RVDNEKMSKSLGNFFTIR+VL+K+D EVVRFFILR Sbjct: 241 ENEIAQSEGASGHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLEKFDAEVVRFFILR 300 Query: 301 AHYRSPLNYSDAHLDDARVALTRLYTALKDVPSEADAAVTVDQSDVYAQRFAEAMNDDFN 360 AHYRS LNYSDAHLDDAR ALTR+YTALKDV + + +D ++ +A RF +AMNDDFN Sbjct: 301 AHYRSQLNYSDAHLDDARNALTRMYTALKDVAPD---HLPLDMTEAHAVRFIDAMNDDFN 357 Query: 361 TPMAVAVLFDLANEVNXRRASPPSKQGIS 389 TP+A+AVLF+LANE+N ++ ++Q I Sbjct: 358 TPLAIAVLFELANEINREKSPVLARQLIG 386 >gb|EGW61530.1| cysteinyl-tRNA synthetase [Dechlorosoma suillum PS] Length = 476 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/383 (78%), Positives = 335/383 (87%), Gaps = 6/383 (1%) Query: 4 LKIYNTLARDKQAFSPIEPGKVRLYVCGMTVYDYCHLGHARVMVVFDMVQRWLRATGFEV 63 LKIYNT+AR+KQ F PIE GKV++YVCGMTVYD+CHLGHARV+VVFD V RWLRA+G +V Sbjct: 2 LKIYNTIAREKQEFVPIEAGKVKMYVCGMTVYDFCHLGHARVLVVFDAVYRWLRASGLDV 61 Query: 64 TYVRNITDIDDKIIQRAIENRESIGQLTQRFIDAMDEDSAALGVQKPDHEPRATAYVPQM 123 TYVRNITDIDDKII+RA+EN E+IGQLT RFI AMDED+AALGVQKP HEPRAT YVPQM Sbjct: 62 TYVRNITDIDDKIIRRAVENGETIGQLTDRFIAAMDEDAAALGVQKPTHEPRATEYVPQM 121 Query: 124 LDLISKLQANGLAYQGSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDPLDF 183 L LI +L+ANGLAY+ +DGDVN+SVR FPGYG+LSGKSLDDLRAGERV+V++ K+DPLDF Sbjct: 122 LGLIGQLEANGLAYKAADGDVNFSVRKFPGYGRLSGKSLDDLRAGERVEVDSAKQDPLDF 181 Query: 184 VLWKAAKESEPGEVKWDSPWGKGRPGWHIECSAMASDLLGDHFDIHGGGQDLQFPHHENE 243 VLWK AK EP W+SPWG GRPGWHIECSAM+SDLLG HFDIHGGGQDLQFPHHENE Sbjct: 182 VLWKHAKAGEPA---WESPWGAGRPGWHIECSAMSSDLLGKHFDIHGGGQDLQFPHHENE 238 Query: 244 IAQSEGAHQHAFVNYWMHNGFIRVDNEKMSKSLGNFFTIRDVLKKYDPEVVRFFILRAHY 303 IAQSEGAH FVNYWMHNGF+RVD+EKMSKSLGNFFTIRDVLKKYD EVVRFFILRAHY Sbjct: 239 IAQSEGAHGCTFVNYWMHNGFVRVDDEKMSKSLGNFFTIRDVLKKYDAEVVRFFILRAHY 298 Query: 304 RSPLNYSDAHLDDARVALTRLYTALKDVPSEADAAVTVDQSDVYAQRFAEAMNDDFNTPM 363 RSPLNYSDAHLDDAR ALTRLYTALK P+E AV VD ++ +AQRF AM+DDFNTP Sbjct: 299 RSPLNYSDAHLDDARQALTRLYTALKAAPAE---AVAVDWNEAHAQRFQAAMDDDFNTPE 355 Query: 364 AVAVLFDLANEVNXRRASPPSKQ 386 A+AVLFDLANE N + S + Q Sbjct: 356 ALAVLFDLANEANRSKDSAVAAQ 378