BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0094.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752997.1| ribonuclease R [Collimonas fungivorans Ter33... 593 e-167 ref|YP_001353805.1| exoribonuclease RNAse R [Janthinobacterium s... 577 e-162 ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspiril... 573 e-161 emb|CAL61451.2| RNase R, 3'-5' exoribonuclease [Herminiimonas ar... 572 e-161 ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease [Herminiimona... 572 e-161 >ref|YP_004752997.1| ribonuclease R [Collimonas fungivorans Ter331] gb|AEK62174.1| Ribonuclease R [Collimonas fungivorans Ter331] Length = 780 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 294/377 (77%), Positives = 321/377 (85%), Gaps = 20/377 (5%) Query: 1 MLAANVCAADLLQRHEHPGLYRVHAGPTKEKLTQLRTFLKQIGLNLNGGDKPSASDYAEL 60 MLAANVCAADL++RH+HPGL+R+HA PTKEKL LRTFLKQ+GL L GGD PSASDYA L Sbjct: 415 MLAANVCAADLMERHKHPGLFRIHAHPTKEKLAVLRTFLKQVGLTLAGGDTPSASDYAAL 474 Query: 61 MPKIKARPDALLVQTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHRAI 120 MPKIKARPDALL+QTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHR I Sbjct: 475 MPKIKARPDALLLQTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHRTI 534 Query: 121 KAILLGKRYEPKGLDTSVLNTMLSPAARKAQAVDRANGKKKSESSVAIWEALGIHCSANE 180 KAIL GKRYEPKG DTS LNTMLSPA RK QA D+A GKK++E S+A+WEALG+HCSANE Sbjct: 535 KAILQGKRYEPKGFDTSSLNTMLSPAGRKKQAEDKAAGKKRNEGSLAVWEALGVHCSANE 594 Query: 181 RRADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGMVHVTELGAD 240 RRADEASRDVEAWLKCYFIRDKLGEEFTG ISGVATFGIFVQLDALYIEG+VHVTELGAD Sbjct: 595 RRADEASRDVEAWLKCYFIRDKLGEEFTGVISGVATFGIFVQLDALYIEGLVHVTELGAD 654 Query: 241 YFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEARR 300 YFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLV EPGI+T+LKNEARR Sbjct: 655 YFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVNEPGIKTVLKNEARR 714 Query: 301 AESAQQARGKGGANAKAGGARKAAPEVAAPPAK---------AKGKTAARTGTAKGAAES 351 A++ +Q R GA KAGG AAPP K AK ++T AK A+ + Sbjct: 715 ADN-EQGR---GAKPKAGGK-------AAPPKKTGSSRVTTAAKTTAPSKTKKAKTASVA 763 Query: 352 ERKRPAKGFSRPSKKKR 368 E+ R K F++ SK+KR Sbjct: 764 EKTRAPKAFTKSSKRKR 780 >ref|YP_001353805.1| exoribonuclease RNAse R [Janthinobacterium sp. Marseille] gb|ABR89682.1| exoribonuclease RNAse R [Janthinobacterium sp. Marseille] Length = 816 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 273/318 (85%), Positives = 293/318 (92%) Query: 1 MLAANVCAADLLQRHEHPGLYRVHAGPTKEKLTQLRTFLKQIGLNLNGGDKPSASDYAEL 60 MLAANVCAADLLQRH+H LYRVHA PTKEKL Q+RTFLKQ+GLNL GGDKP+ASDYAEL Sbjct: 455 MLAANVCAADLLQRHKHHSLYRVHALPTKEKLNQVRTFLKQVGLNLGGGDKPTASDYAEL 514 Query: 61 MPKIKARPDALLVQTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHRAI 120 MPKIK RPDALL+QTMLLRSMQQAVYSPENIGHFGLSYE+YAHFTSPIRRYPDLLTHRAI Sbjct: 515 MPKIKNRPDALLLQTMLLRSMQQAVYSPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAI 574 Query: 121 KAILLGKRYEPKGLDTSVLNTMLSPAARKAQAVDRANGKKKSESSVAIWEALGIHCSANE 180 KAIL GKRYEP+G+DTS LNTMLSPAARK A D+A GK+KSE +AIWEALGIHCSANE Sbjct: 575 KAILQGKRYEPRGMDTSTLNTMLSPAARKKHAQDKAEGKQKSEGDLAIWEALGIHCSANE 634 Query: 181 RRADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGMVHVTELGAD 240 RRADEASRDVEAWLKCYFIRDKLGEEFTG ISGVATFGIFVQLD+L+IEGMVHVTELGAD Sbjct: 635 RRADEASRDVEAWLKCYFIRDKLGEEFTGVISGVATFGIFVQLDSLFIEGMVHVTELGAD 694 Query: 241 YFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEARR 300 +F++DEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLV EPGIRT+LKNEARR Sbjct: 695 HFKFDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVNEPGIRTVLKNEARR 754 Query: 301 AESAQQARGKGGANAKAG 318 A++ Q R K + AG Sbjct: 755 ADNEHQQRSKKAEKSVAG 772 >ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1] gb|ADJ63371.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1] Length = 839 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 273/321 (85%), Positives = 297/321 (92%), Gaps = 5/321 (1%) Query: 1 MLAANVCAADLLQRHEHPGLYRVHAGPTKEKLTQLRTFLKQIGLNLNGGDKPSASDYAEL 60 MLAANVCAADLL+RH+HP LYR+HAGPTKEKLT LRTFLKQ+GL L GGD PSASDYAEL Sbjct: 455 MLAANVCAADLLKRHDHPALYRIHAGPTKEKLTTLRTFLKQVGLTLGGGDTPSASDYAEL 514 Query: 61 MPKIKARPDALLVQTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHRAI 120 MPK+KARPDA+L+QTMLLRSMQQAVYSP+NIGHFGLSYESYAHFTSPIRRYPDLLTHRAI Sbjct: 515 MPKVKARPDAVLIQTMLLRSMQQAVYSPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAI 574 Query: 121 KAILLGKRYEPKGLDTSVLNTMLSPAARKAQA----VDRANGKK-KSESSVAIWEALGIH 175 KA+L GKRYEPKG+D+ LNT +SPAARKAQA D+A GKK + ES++AIWEALG+H Sbjct: 575 KAVLQGKRYEPKGIDSGALNTSISPAARKAQAQQRAADKAAGKKPRGESALAIWEALGLH 634 Query: 176 CSANERRADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGMVHVT 235 CSANERRADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEG+VHVT Sbjct: 635 CSANERRADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGLVHVT 694 Query: 236 ELGADYFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILK 295 ELGADYFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDL LV EPGIRT+LK Sbjct: 695 ELGADYFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLLK 754 Query: 296 NEARRAESAQQARGKGGANAK 316 NEA+RAESA +++ GG A+ Sbjct: 755 NEAKRAESAARSKSAGGRQAQ 775 >emb|CAL61451.2| RNase R, 3'-5' exoribonuclease [Herminiimonas arsenicoxydans] Length = 820 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 286/371 (77%), Positives = 314/371 (84%), Gaps = 8/371 (2%) Query: 1 MLAANVCAADLLQRHEHPGLYRVHAGPTKEKLTQLRTFLKQIGLNLNGGDKPSASDYAEL 60 MLAANVCAADLL+RH+HP LYRVHA PTKEKL Q+RTFLKQ+GLNL GGDKPSASDYAEL Sbjct: 455 MLAANVCAADLLERHKHPSLYRVHALPTKEKLNQVRTFLKQVGLNLPGGDKPSASDYAEL 514 Query: 61 MPKIKARPDALLVQTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHRAI 120 MPKIK RPDALL+QTMLLRSMQQAVYSPENIGHFGLSYE+YAHFTSPIRRYPDLLTHRAI Sbjct: 515 MPKIKNRPDALLLQTMLLRSMQQAVYSPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAI 574 Query: 121 KAILLGKRYEPKGLDTSVLNTMLSPAARKAQAVDRANGKK--KSESSVAIWEALGIHCSA 178 KAIL GKRY PKG+DTS LNTMLS AARK A D+A GK+ K+E +AIWEALGIHCSA Sbjct: 575 KAILQGKRYTPKGIDTSALNTMLSSAARKKHAQDKAEGKQREKAEGDLAIWEALGIHCSA 634 Query: 179 NERRADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGMVHVTELG 238 NERRADEASRDVEAWLKCYFIRDKLGEEFTG ISGV TFGIFVQLD L+IEGMVHVTELG Sbjct: 635 NERRADEASRDVEAWLKCYFIRDKLGEEFTGVISGVTTFGIFVQLDTLFIEGMVHVTELG 694 Query: 239 ADYFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEA 298 AD+F++DE+RHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRT+LKNEA Sbjct: 695 ADHFKFDESRHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTVLKNEA 754 Query: 299 RRAESAQQARGKGGAN-AKAGGARKAAPEVAAPPAKAKGKTAARTGTAKGAAESERKRPA 357 RRA++ Q R K G ++ ARK+A V A A + A ++++ PA Sbjct: 755 RRADTEHQQRTKKGEQKSEPKSARKSA--VKAATADNAPAKKPKAAKRPPATPNKQRPPA 812 Query: 358 KGFSRPSKKKR 368 +PSKKKR Sbjct: 813 ---VKPSKKKR 820 >ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease [Herminiimonas arsenicoxydans] Length = 776 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 286/371 (77%), Positives = 314/371 (84%), Gaps = 8/371 (2%) Query: 1 MLAANVCAADLLQRHEHPGLYRVHAGPTKEKLTQLRTFLKQIGLNLNGGDKPSASDYAEL 60 MLAANVCAADLL+RH+HP LYRVHA PTKEKL Q+RTFLKQ+GLNL GGDKPSASDYAEL Sbjct: 411 MLAANVCAADLLERHKHPSLYRVHALPTKEKLNQVRTFLKQVGLNLPGGDKPSASDYAEL 470 Query: 61 MPKIKARPDALLVQTMLLRSMQQAVYSPENIGHFGLSYESYAHFTSPIRRYPDLLTHRAI 120 MPKIK RPDALL+QTMLLRSMQQAVYSPENIGHFGLSYE+YAHFTSPIRRYPDLLTHRAI Sbjct: 471 MPKIKNRPDALLLQTMLLRSMQQAVYSPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAI 530 Query: 121 KAILLGKRYEPKGLDTSVLNTMLSPAARKAQAVDRANGKK--KSESSVAIWEALGIHCSA 178 KAIL GKRY PKG+DTS LNTMLS AARK A D+A GK+ K+E +AIWEALGIHCSA Sbjct: 531 KAILQGKRYTPKGIDTSALNTMLSSAARKKHAQDKAEGKQREKAEGDLAIWEALGIHCSA 590 Query: 179 NERRADEASRDVEAWLKCYFIRDKLGEEFTGTISGVATFGIFVQLDALYIEGMVHVTELG 238 NERRADEASRDVEAWLKCYFIRDKLGEEFTG ISGV TFGIFVQLD L+IEGMVHVTELG Sbjct: 591 NERRADEASRDVEAWLKCYFIRDKLGEEFTGVISGVTTFGIFVQLDTLFIEGMVHVTELG 650 Query: 239 ADYFQYDEARHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTILKNEA 298 AD+F++DE+RHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRT+LKNEA Sbjct: 651 ADHFKFDESRHELRGERTGIRYQLTDRVTVQVSRVDLDARKIDLRLVTEPGIRTVLKNEA 710 Query: 299 RRAESAQQARGKGGAN-AKAGGARKAAPEVAAPPAKAKGKTAARTGTAKGAAESERKRPA 357 RRA++ Q R K G ++ ARK+A V A A + A ++++ PA Sbjct: 711 RRADTEHQQRTKKGEQKSEPKSARKSA--VKAATADNAPAKKPKAAKRPPATPNKQRPPA 768 Query: 358 KGFSRPSKKKR 368 +PSKKKR Sbjct: 769 ---VKPSKKKR 776