BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0093.p (453 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspiril... 768 0.0 ref|YP_001353805.1| exoribonuclease RNAse R [Janthinobacterium s... 736 0.0 emb|CAL61451.2| RNase R, 3'-5' exoribonuclease [Herminiimonas ar... 728 0.0 ref|YP_004752997.1| ribonuclease R [Collimonas fungivorans Ter33... 715 0.0 ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease [Herminiimona... 672 0.0 >ref|YP_003775279.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1] gb|ADJ63371.1| exoribonuclease RNAse R protein [Herbaspirillum seropedicae SmR1] Length = 839 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/416 (90%), Positives = 395/416 (94%) Query: 1 LSQFPYSIPSREEILGILRTSSGAQNTMTLAAALSVKPEEMDGLTRRLNAMERDGQIKAD 60 +SQFPYSIPSREEILGILRTSSGAQN LAAAL VKPEEMDGLTRRLNAMERDGQIK D Sbjct: 1 MSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 60 Query: 61 RSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQKVLHGDRVQARIIGT 120 R+G+Y+LTHS FI GRVSSHRDGFGFLLP+DGS D+FLPEKEMQKV+HGDRVQARI+GT Sbjct: 61 RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 120 Query: 121 DRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDVILAGSPGKAKAGQVV 180 DRRGRPEGTIVEVV RANTHVIGRLLNENGVW+VAPEDKRIG DV+LAG PGKAKAGQVV Sbjct: 121 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 180 Query: 181 SVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLASKLPSEV 240 SVELTE PSRYTQPVGKI EILGDIDDPGMEIEIAVRKYGVPHEFS+AAKKL++KLPSEV Sbjct: 181 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 240 Query: 241 RAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYRLIVAIADVSHYVKPN 300 +AADL DRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGR+ GYRLIVAIADVSHYVKPN Sbjct: 241 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 300 Query: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ Sbjct: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 Query: 361 FYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEVFQALLQARAQR 416 FYPAVIHSAARLTYTEVA++LANTKGPEAA+R G+VPHL HLYEVFQALL AR R Sbjct: 361 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQAR 416 >ref|YP_001353805.1| exoribonuclease RNAse R [Janthinobacterium sp. Marseille] gb|ABR89682.1| exoribonuclease RNAse R [Janthinobacterium sp. Marseille] Length = 816 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/416 (86%), Positives = 390/416 (93%) Query: 1 LSQFPYSIPSREEILGILRTSSGAQNTMTLAAALSVKPEEMDGLTRRLNAMERDGQIKAD 60 +SQ+ Y+IPSREEILGILRT++G+ + TLA AL VKP+EMDGL RRLNAMERDGQIK D Sbjct: 1 MSQYSYTIPSREEILGILRTATGSHDASTLATALGVKPDEMDGLMRRLNAMERDGQIKPD 60 Query: 61 RSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQKVLHGDRVQARIIGT 120 R+GNYQL HS +FIEGRVSSHRDGFGFL+P+D SADIFLPEKEMQKVLHGDRVQARIIGT Sbjct: 61 RAGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQKVLHGDRVQARIIGT 120 Query: 121 DRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDVILAGSPGKAKAGQVV 180 DRRGRPEGTIVEVV+RAN+HVIGRLLNENGVWVVAPEDKRIGQD++LAGSPGKAK GQVV Sbjct: 121 DRRGRPEGTIVEVVARANSHVIGRLLNENGVWVVAPEDKRIGQDIMLAGSPGKAKTGQVV 180 Query: 181 SVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLASKLPSEV 240 SVELTEQPSR++QPVGKI E+LGDIDDPGMEIEIAVRKYGVPHEFS+AAKK A+KLP+EV Sbjct: 181 SVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEFSEAAKKAAAKLPNEV 240 Query: 241 RAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYRLIVAIADVSHYVKPN 300 RA DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGR++G+RLIVAIADVS+YVKPN Sbjct: 241 RAVDLHDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFRLIVAIADVSNYVKPN 300 Query: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 +ALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLVCDAVITAKGEIKAYQ Sbjct: 301 EALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLVCDAVITAKGEIKAYQ 360 Query: 361 FYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEVFQALLQARAQR 416 FYPAVIHSAARLTYTEVAA+L NTKG EA KR +VPHLL+LY V+QALLQAR R Sbjct: 361 FYPAVIHSAARLTYTEVAAILGNTKGIEATKRPALVPHLLNLYGVYQALLQARHAR 416 >emb|CAL61451.2| RNase R, 3'-5' exoribonuclease [Herminiimonas arsenicoxydans] Length = 820 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/416 (83%), Positives = 383/416 (92%) Query: 1 LSQFPYSIPSREEILGILRTSSGAQNTMTLAAALSVKPEEMDGLTRRLNAMERDGQIKAD 60 +SQ+ Y+IPSREEILGILRT++ + + +LA L VK +EMDGL RRLNAMERDGQIK D Sbjct: 1 MSQYSYTIPSREEILGILRTATSSHDATSLATVLGVKTDEMDGLMRRLNAMERDGQIKPD 60 Query: 61 RSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQKVLHGDRVQARIIGT 120 R+GNYQL HS +FIEGRVSSHRDGFGFL+P+D SADIFLPEKEMQKVLHGDRVQARIIGT Sbjct: 61 RTGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQKVLHGDRVQARIIGT 120 Query: 121 DRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDVILAGSPGKAKAGQVV 180 DRRGRPEGTIVEVV+RANTHVIGRLLNENGVW+VAPED+RIGQD++L+GSPG AK GQVV Sbjct: 121 DRRGRPEGTIVEVVARANTHVIGRLLNENGVWIVAPEDQRIGQDIMLSGSPGNAKTGQVV 180 Query: 181 SVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLASKLPSEV 240 SVELTEQPSR++QPVGKI E+LGDIDDPGMEIEIAVRKYGVPHEFS+ AKK ASKLP EV Sbjct: 181 SVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEFSEEAKKAASKLPDEV 240 Query: 241 RAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYRLIVAIADVSHYVKPN 300 RA DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGR++G+RLIVAIADVS+YVKPN Sbjct: 241 RAIDLTDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFRLIVAIADVSNYVKPN 300 Query: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 + LDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLVCDAVIT KGEIKAYQ Sbjct: 301 EPLDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLVCDAVITTKGEIKAYQ 360 Query: 361 FYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEVFQALLQARAQR 416 FYPAV+HSAARLTYTEVAA+L NTKG EAAKR +VPHLL+L+ V++ALLQAR R Sbjct: 361 FYPAVMHSAARLTYTEVAAILGNTKGIEAAKRPALVPHLLNLHGVYKALLQARHAR 416 >ref|YP_004752997.1| ribonuclease R [Collimonas fungivorans Ter331] gb|AEK62174.1| Ribonuclease R [Collimonas fungivorans Ter331] Length = 780 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/376 (91%), Positives = 361/376 (96%) Query: 41 MDGLTRRLNAMERDGQIKADRSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLP 100 MDGLTRRLNAMERDGQIK DRSG Y+LT+S FIEGRVSSHRDGFGFL+ ++G D+FLP Sbjct: 1 MDGLTRRLNAMERDGQIKPDRSGVYKLTNSPGFIEGRVSSHRDGFGFLISDEGGDDVFLP 60 Query: 101 EKEMQKVLHGDRVQARIIGTDRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKR 160 EKEMQKVLHGDRVQARIIGTDRRGRPEGTIVEVVSRANTHVIGRLLNENGVWV+APEDKR Sbjct: 61 EKEMQKVLHGDRVQARIIGTDRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVIAPEDKR 120 Query: 161 IGQDVILAGSPGKAKAGQVVSVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYG 220 IGQD+ILAGSPGKAKAGQVVSV+LTEQPSRYTQPVGKI EILGDIDDPGMEIEIAVRKYG Sbjct: 121 IGQDIILAGSPGKAKAGQVVSVQLTEQPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYG 180 Query: 221 VPHEFSDAAKKLASKLPSEVRAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGR 280 VPHEFS+AAKKLA+KLP EVRAADL DRVDLRDVPLVTIDGEDARDFDDAVYCEP+KIGR Sbjct: 181 VPHEFSEAAKKLAAKLPGEVRAADLGDRVDLRDVPLVTIDGEDARDFDDAVYCEPIKIGR 240 Query: 281 SNGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 340 +NGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD Sbjct: 241 ANGYRLIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVD 300 Query: 341 RLTLVCDAVITAKGEIKAYQFYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLL 400 RLTLVCDAVI+AKGEIKAYQFYPAVIHSAARLTYTEVAA+L NTKGPEAAKR G+VPHLL Sbjct: 301 RLTLVCDAVISAKGEIKAYQFYPAVIHSAARLTYTEVAAILGNTKGPEAAKRPGLVPHLL 360 Query: 401 HLYEVFQALLQARAQR 416 HLYEVF ALLQAR R Sbjct: 361 HLYEVFHALLQARQAR 376 >ref|YP_001099578.1| RNase R, 3'-5' exoribonuclease [Herminiimonas arsenicoxydans] Length = 776 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/371 (86%), Positives = 348/371 (93%) Query: 46 RRLNAMERDGQIKADRSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQ 105 RRLNAMERDGQIK DR+GNYQL HS +FIEGRVSSHRDGFGFL+P+D SADIFLPEKEMQ Sbjct: 2 RRLNAMERDGQIKPDRTGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQ 61 Query: 106 KVLHGDRVQARIIGTDRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDV 165 KVLHGDRVQARIIGTDRRGRPEGTIVEVV+RANTHVIGRLLNENGVW+VAPED+RIGQD+ Sbjct: 62 KVLHGDRVQARIIGTDRRGRPEGTIVEVVARANTHVIGRLLNENGVWIVAPEDQRIGQDI 121 Query: 166 ILAGSPGKAKAGQVVSVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEF 225 +L+GSPG AK GQVVSVELTEQPSR++QPVGKI E+LGDIDDPGMEIEIAVRKYGVPHEF Sbjct: 122 MLSGSPGNAKTGQVVSVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEF 181 Query: 226 SDAAKKLASKLPSEVRAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYR 285 S+ AKK ASKLP EVRA DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGR++G+R Sbjct: 182 SEEAKKAASKLPDEVRAIDLTDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFR 241 Query: 286 LIVAIADVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLV 345 LIVAIADVS+YVKPN+ LDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLV Sbjct: 242 LIVAIADVSNYVKPNEPLDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLV 301 Query: 346 CDAVITAKGEIKAYQFYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEV 405 CDAVIT KGEIKAYQFYPAV+HSAARLTYTEVAA+L NTKG EAAKR +VPHLL+L+ V Sbjct: 302 CDAVITTKGEIKAYQFYPAVMHSAARLTYTEVAAILGNTKGIEAAKRPALVPHLLNLHGV 361 Query: 406 FQALLQARAQR 416 ++ALLQAR R Sbjct: 362 YKALLQARHAR 372