BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0085.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776336.1| LysR family transcription regulator protein ... 462 e-128 ref|YP_001099999.1| transcriptional regulator [Herminiimonas ars... 389 e-106 ref|YP_001633132.1| LysR family transcriptional regulator [Borde... 386 e-105 ref|ZP_07003472.1| Transcriptional regulator, LysR family [Pseud... 384 e-104 ref|ZP_06458120.1| LysR family transcriptional regulator [Pseudo... 383 e-104 >ref|YP_003776336.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64428.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/293 (74%), Positives = 261/293 (89%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M++QS+E+R F+AVVEAG+LSAAAE+L QTTSGVSRAL+RLE+KLG SLLTRTTRRM+LT Sbjct: 1 MSLQSEELRTFVAVVEAGTLSAAAELLAQTTSGVSRALSRLEDKLGASLLTRTTRRMELT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEG+ FLEQAR I+AAME A++SIR+R++KPVGKLRVDASAPFMLHC+VPHVG FR AYP Sbjct: 61 EEGRAFLEQARAILAAMESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 DIEL+LTTNDRFIDLVE R DIAIRIGELQDS+LHA+ L+SARL ++ASP YL RHG P+ Sbjct: 121 DIELELTTNDRFIDLVEHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPE 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 +V+ L++HQLIGF+QP+ LN+WPL+H GDRY RPA+RASSGETIR LAL GQGIACLS Sbjct: 181 SVEALEQHQLIGFSQPDQLNHWPLRHSAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFLQCKL 293 NFM DAD+ GRLVRLL ++ + +RQ+I AVYY +T++SRRISCFLDFLQ KL Sbjct: 241 NFMSDADIAAGRLVRLLPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQEKL 293 >ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL61874.1| putative Bacterial regulatory protein, LysR family [Herminiimonas arsenicoxydans] Length = 293 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/293 (63%), Positives = 236/293 (80%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M + SD+++ F+AV+++G+L AAA+ L QTTS VSR L+RLEEKL TSLLTRTTRRM+LT Sbjct: 1 MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 +EG++FL++AR I+AAM+ AEE+IR+R Q+P G+LR+DA+APF+LH IVPHV FR YP Sbjct: 61 DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 I L+LT+ND+ DL+E RTDIAIRIG LQDSTLHA+ LT+ L LLASP+YL+RHG P Sbjct: 121 QITLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPT 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 T + L HQL+GF Q E N WP++H G+ + PAL ASSGET+R LALHGQGIA L+ Sbjct: 181 TPEQLAGHQLLGFLQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALALHGQGIASLA 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFLQCKL 293 ++M D+ GRLVR+LE +T +RQQIHAVYYRNT++SRRISCFL+FLQ KL Sbjct: 241 DYMTRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >ref|YP_001633132.1| LysR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP44865.1| transcriptional regulator, LysR-family [Bordetella petrii] Length = 293 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 182/289 (62%), Positives = 232/289 (80%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 MA+ SD +R+F+AVV+ GS+SAAAE L QT SGVSR+L+RLE +LG +LLTRTTRRM+LT Sbjct: 1 MALSSDALRVFLAVVDTGSMSAAAEFLGQTASGVSRSLSRLETQLGVTLLTRTTRRMELT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEGQ+FL++AR IV ++ AEE +RIR Q+P GKLRVDASAP MLHC+VP++ FR+ YP Sbjct: 61 EEGQLFLQRARGIVGDLDDAEECMRIRRQQPAGKLRVDASAPVMLHCVVPYIAEFRQRYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 +I L+LT+NDR +DLVE RTDIA+R G L DS+LHA+PL +R ++ASP Y+ R G P Sbjct: 121 EISLELTSNDRIVDLVEHRTDIALRAGPLSDSSLHARPLRPSRRLVVASPAYVARRGAPA 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 TV+ L +H+L+GFTQPE LN WPL+H G + I P L ASSGET RQLA++G GIACLS Sbjct: 181 TVEALRQHELLGFTQPETLNVWPLRHAGGAEFTIVPTLAASSGETQRQLAINGVGIACLS 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFL 289 FML AD+ EGRLV+LLE + T + Q +HAVYYRNT+++RRI+CFLDF Sbjct: 241 EFMLKADLAEGRLVKLLENACTDYVQPMHAVYYRNTQLARRIACFLDFF 289 >ref|ZP_07003472.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gb|EFI01111.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 298 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/293 (61%), Positives = 233/293 (79%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M +SDE+++F++V+E+GS+SAAAE + QT SGVSR L+RLE KL T+L+ RTTRRMDLT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEG+ FLE+AR I+ ME EE + Q P G+LR++A++PFMLHCIVPHV FR+ YP Sbjct: 61 EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 DIEL+L ++D FIDL+EQ TDIAIRIG L DSTLHA+ L S L ++ASP YL+RHGTPK Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIGALPDSTLHARSLGSCPLNIVASPAYLQRHGTPK 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 T +DL +H L+GFT E LN WPL+H +GDR I+PA+ ASSG+T+R L L G GIACLS Sbjct: 181 TAEDLAQHVLVGFTHVESLNQWPLRHAEGDRLSIKPAISASSGDTLRYLVLEGVGIACLS 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFLQCKL 293 +FM + D++EGRLV LL+ +++ +RQ IHAVYYRN+R++ RI CFLDF+Q KL Sbjct: 241 DFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKL 293 >ref|ZP_06458120.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] ref|ZP_06482693.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gb|EGH03871.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/293 (61%), Positives = 233/293 (79%) Query: 1 MAMQSDEMRIFIAVVEAGSLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M +SDE+++F++V+E+GS+SAAAE + QT SGVSR L+RLE KL T+L+ RTTRRMDLT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDASAPFMLHCIVPHVGAFREAYP 120 EEG+ FLE+AR I+ ME EE + Q P G+LR++A++PFMLHCIVPHV FR+ YP Sbjct: 61 EEGKFFLERARHIIEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 DIELDLTTNDRFIDLVEQRTDIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 DIEL+L ++D FIDL+EQ TDIAIRIG L DSTLHA+ L S L ++ASP YL+RHG+PK Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIGVLPDSTLHARSLGSCLLNIVASPAYLQRHGSPK 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYPIRPALRASSGETIRQLALHGQGIACLS 240 T +DL +H L+GFT E LN WPL+H +GDR I+PA+ ASSG+T+R L L G GIACLS Sbjct: 181 TAEDLAQHVLVGFTHVESLNQWPLRHAEGDRLSIKPAISASSGDTLRHLVLEGVGIACLS 240 Query: 241 NFMLDADVKEGRLVRLLEKSHTAFRQQIHAVYYRNTRISRRISCFLDFLQCKL 293 +FM + D++EGRLV LL+ +++ +RQ IHAVYYRN+R++ RI CFLDF+Q KL Sbjct: 241 DFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKL 293