BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0066.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353819.1| PilF type IV pilus assembly protein [Janthin... 275 3e-72 ref|YP_001099564.1| hypothetical protein HEAR1262 [Herminiimonas... 269 3e-70 ref|YP_004752569.1| hypothetical protein CFU_1914 [Collimonas fu... 256 2e-66 ref|ZP_08275721.1| Type IV pilus biogenesis protein PilF [Oxalob... 250 1e-64 ref|YP_004619002.1| type 4 fimbrial biogenesis protein PilF [Ram... 182 2e-44 >ref|YP_001353819.1| PilF type IV pilus assembly protein [Janthinobacterium sp. Marseille] gb|ABR89084.1| PilF type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 266 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/226 (58%), Positives = 169/226 (74%) Query: 11 QADARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQ 70 + D +KRA IRLQLAIGYY+Q Q V L+E LALQ P+FA+AY M AL M+ G +R Sbjct: 41 KTDNQKRARIRLQLAIGYYQQGQLNVALDEVKLALQTDPNFADAYSMAALIYMDQGETRM 100 Query: 71 AEADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGA 130 AE +F +ALRL+P +PD +NNYGWFLC N RA ++IPYFEAA+ TY SP KAL NAGA Sbjct: 101 AEENFQRALRLAPNDPDLSNNYGWFLCQNGRANQSIPYFEAALRSKTYQSPAKALNNAGA 160 Query: 131 CSLKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNV 190 CSL ++ AAERYF AF+++P +L T NL R+ ++R + ERARF+I K DVL+ Sbjct: 161 CSLILKDTVAAERYFNEAFRHDPGNLTTATNLARLNYERGDLERARFYINRVTKADVLSA 220 Query: 191 DALWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 + LWLAIKIERK+G+++AEN LA QLR YP S+E+AAYQRGAF+E Sbjct: 221 EVLWLAIKIERKVGDRAAENSLATQLRRRYPDSAEFAAYQRGAFNE 266 >ref|YP_001099564.1| hypothetical protein HEAR1262 [Herminiimonas arsenicoxydans] emb|CAL61437.1| conserved hypothetical protein; putative TPR repeat [Herminiimonas arsenicoxydans] Length = 265 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 129/226 (57%), Positives = 169/226 (74%) Query: 11 QADARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQ 70 +AD +KRA IRLQLAIGYY+Q Q + L+E LALQ +FA+AY M L M+MG +R Sbjct: 40 KADRQKRAAIRLQLAIGYYQQGQMNIALDEIKLALQTDSEFADAYSMAGLIYMDMGETRL 99 Query: 71 AEADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGA 130 AE +F +A+RL+P +PD +NNYGWFLC N RA+ +I YFEAA+ Y SP KAL NAG Sbjct: 100 AEENFTRAIRLAPNDPDLSNNYGWFLCQNGRASLSIAYFEAAIRNKAYQSPAKALNNAGT 159 Query: 131 CSLKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNV 190 CS+ ++AAAAERYF AF+YEP + TN NL R+ +DR +FERARF+I K DVL+ Sbjct: 160 CSMILKDAAAAERYFNEAFRYEPGNPTTNTNLARMNYDRGDFERARFYIVRVTKADVLSA 219 Query: 191 DALWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 + LWLA+KIERK+G+++AE+ A QLR YP+S+E++AYQRGAF+E Sbjct: 220 EVLWLAVKIERKMGDRAAESSYATQLRRRYPNSNEFSAYQRGAFNE 265 >ref|YP_004752569.1| hypothetical protein CFU_1914 [Collimonas fungivorans Ter331] gb|AEK61746.1| hypothetical protein CFU_1914 [Collimonas fungivorans Ter331] Length = 281 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/226 (54%), Positives = 162/226 (71%) Query: 11 QADARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQ 70 Q +A++RA IRLQLA+GYYEQ Q V L+E AL A P+ A+AY +R L M M +R Sbjct: 56 QTEAQRRASIRLQLAVGYYEQHQLEVALDEIKQALAADPELADAYSVRGLIYMGMSENRL 115 Query: 71 AEADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGA 130 A+ +F +ALRLSP NPD+ANNYGWFLC N RA E+I +FE A+ Y SP KAL NAG Sbjct: 116 ADDNFQRALRLSPNNPDYANNYGWFLCQNGRAKESIVHFETALKSRNYQSPAKALTNAGV 175 Query: 131 CSLKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNV 190 CSLK + AA+RY ++AFQ++ ++ TN L ++ +DR+++ERARF+IGL K DV N Sbjct: 176 CSLKFNDTVAAQRYLSQAFQFDASNPLTNAKLAQLAYDRNDYERARFYIGLVLKTDVQNA 235 Query: 191 DALWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 +ALW AIK+ERKLG+ +AE L QLR + S E+AAYQRGAF+E Sbjct: 236 EALWTAIKVERKLGDTAAEASLVTQLRRRFGGSPEFAAYQRGAFNE 281 >ref|ZP_08275721.1| Type IV pilus biogenesis protein PilF [Oxalobacteraceae bacterium IMCC9480] gb|EGF30808.1| Type IV pilus biogenesis protein PilF [Oxalobacteraceae bacterium IMCC9480] Length = 266 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/226 (53%), Positives = 163/226 (72%) Query: 11 QADARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQ 70 + D ++RA IRL+LAI YY+Q Q V L+E AL + P+ ++AY +RAL M MG + Sbjct: 41 RTDNQRRAQIRLELAINYYQQGQLPVALDELKQALLSDPNLSDAYSVRALIYMNMGEIKL 100 Query: 71 AEADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGA 130 A+ +F A+RL+P NP+ +NYGW+LC N RAAE+I YFEA + TY P KAL NAG Sbjct: 101 ADDNFRTAIRLAPNNPELTSNYGWYLCQNGRAAESIAYFEATLKSRTYQEPSKALNNAGL 160 Query: 131 CSLKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNV 190 CSLK + AAAERYF +AFQ++P + + ++L I+++R E+ERA+F+ G K DVL+V Sbjct: 161 CSLKLNDEAAAERYFKQAFQFDPTNASAMLSLANIHYNRREYERAQFYTGRLLKADVLSV 220 Query: 191 DALWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 + LWLAI+ E KLGN++AEN L QLR YP+S+E+AAYQRGAFDE Sbjct: 221 EVLWLAIRTEHKLGNRTAENSLVTQLRRRYPASNEFAAYQRGAFDE 266 >ref|YP_004619002.1| type 4 fimbrial biogenesis protein PilF [Ramlibacter tataouinensis TTB310] gb|AEG92983.1| type 4 fimbrial biogenesis protein PilF-like protein [Ramlibacter tataouinensis TTB310] Length = 274 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 138/224 (61%) Query: 13 DARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQAE 72 +ARKRA IR++LA+GY+EQ Q +V L+E + + P+F +AY +R L M + QAE Sbjct: 51 EARKRARIRMELALGYFEQGQTSVALDEIKQVIASDPNFPQAYNLRGLIYMRLNDMGQAE 110 Query: 73 ADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGACS 132 F +AL + P + D +NYGW C R E++ FE A+A PTY + K L G C Sbjct: 111 DSFRRALSVDPRSGDTLHNYGWLQCQQRRYDESVRSFEQALANPTYGARAKTLMAQGLCQ 170 Query: 133 LKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNVDA 192 ++ A AER AR+++ + A+ T NL R+ + R E +R++F+I +++ N ++ Sbjct: 171 ARAGRAVDAERSLARSYELDAANPVTGYNLARLLYQRGELKRSQFYIRRLNNSELSNSES 230 Query: 193 LWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 LWL I++ER+LG++ A +LA QLR +P S E AY RGAFDE Sbjct: 231 LWLGIRVERRLGDRVAMTQLAEQLRRRHPQSRELTAYNRGAFDE 274