BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0064.p (393 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspir... 746 0.0 ref|YP_004752568.1| ribosomal RNA large subunit methyltransferas... 735 0.0 ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacte... 734 0.0 ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacte... 721 0.0 ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas... 711 0.0 >ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1] gb|ADJ64443.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/393 (90%), Positives = 371/393 (94%), Gaps = 3/393 (0%) Query: 1 MTTALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLS 60 M TALTNLLD+DPAQLVAYCGELGEKPFRAKQLQRWIHQ+GVADF +MTDLAKSLR+KL Sbjct: 1 MNTALTNLLDMDPAQLVAYCGELGEKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLK 60 Query: 61 TRAHVTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRF 120 TRA V APAIISDHTSTDGTRKWLVDVG GNAVETVFIPEENRGTLC+STQAGCAVNCRF Sbjct: 61 TRAEVRAPAIISDHTSTDGTRKWLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRF 120 Query: 121 CSTGKQGFNRNLSVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFE 180 CSTGKQGFNRNLSV EIIGQLWMAEFELRKTKG+E GPKGERQITNVVMMGMGEPLLNFE Sbjct: 121 CSTGKQGFNRNLSVAEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFE 180 Query: 181 PTVTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLI 240 PTVTAL+LMLDDNAYGLSRRRVTLSTSGVVPMI KLSQEC VALAVSLHASND LRD LI Sbjct: 181 PTVTALRLMLDDNAYGLSRRRVTLSTSGVVPMIGKLSQECPVALAVSLHASNDALRDSLI 240 Query: 241 PLNKKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAA 300 PLN+K+PL+ELM ACKRYLEFAPRDF+TFEYCMLDGVND+D HARELV LV+ G + A Sbjct: 241 PLNRKHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEG---ETA 297 Query: 301 VPCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGE 360 +PCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGE Sbjct: 298 IPCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGE 357 Query: 361 VKDRTRVQERMQKMTEYQQKFGKDFGRIVEITG 393 VKDRTRVQERMQKM EYQ KFGKDFGRIVEI+G Sbjct: 358 VKDRTRVQERMQKMAEYQNKFGKDFGRIVEISG 390 >ref|YP_004752568.1| ribosomal RNA large subunit methyltransferase N [Collimonas fungivorans Ter331] gb|AEK61745.1| Ribosomal RNA large subunit methyltransferase N [Collimonas fungivorans Ter331] Length = 391 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/390 (88%), Positives = 372/390 (95%), Gaps = 1/390 (0%) Query: 3 TALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTR 62 TALTNLLDLDPAQL AYCGELGEKPFRAKQL RWIHQ+G DF MTDLAKSLR+KL+TR Sbjct: 2 TALTNLLDLDPAQLTAYCGELGEKPFRAKQLLRWIHQFGAHDFDAMTDLAKSLRDKLATR 61 Query: 63 AHVTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCS 122 A + APA+ISDHTSTDGTRKWL+DVG GNAVETVFIPEENRGTLCISTQAGCAVNCRFCS Sbjct: 62 AMIAAPAVISDHTSTDGTRKWLLDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCS 121 Query: 123 TGKQGFNRNLSVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPT 182 TGKQGF+RNL+VGEIIGQLWMAEFELRK+KG+E G KGERQITNVVMMGMGEPLLN+EPT Sbjct: 122 TGKQGFSRNLTVGEIIGQLWMAEFELRKSKGIEPGHKGERQITNVVMMGMGEPLLNYEPT 181 Query: 183 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLIPL 242 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQ+CAVA+AVSLHASNDTLRDGL+PL Sbjct: 182 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVAMAVSLHASNDTLRDGLVPL 241 Query: 243 NKKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAAVP 302 NKKYPL++LMAACKRYLEFAPRDF+TFEYCMLDGVND+DAHAREL+ LVQG AVP Sbjct: 242 NKKYPLRDLMAACKRYLEFAPRDFITFEYCMLDGVNDTDAHARELIALVQGHAGG-PAVP 300 Query: 303 CKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVK 362 CKFNLIPFNPFPESGLKRS+NPRIKAFAQILMDAGIVTT+RKTRGDDIDAACGQLAGEV+ Sbjct: 301 CKFNLIPFNPFPESGLKRSNNPRIKAFAQILMDAGIVTTVRKTRGDDIDAACGQLAGEVQ 360 Query: 363 DRTRVQERMQKMTEYQQKFGKDFGRIVEIT 392 DRTRVQERMQKMTEYQQKFGK+FGRI+E++ Sbjct: 361 DRTRVQERMQKMTEYQQKFGKNFGRIIEVS 390 >ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacterium sp. Marseille] sp|A6SZX3.1|RLMN_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase gb|ABR89366.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 387 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/390 (88%), Positives = 369/390 (94%), Gaps = 5/390 (1%) Query: 3 TALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTR 62 T LTNLLDLDPAQL+AYCGELGEKPFRAKQLQRWIHQ+G +DF MTDLAKSLR+KL+TR Sbjct: 2 TTLTNLLDLDPAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATR 61 Query: 63 AHVTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCS 122 A + APA+ISDHTS DGTRKWLVDVG GNAVETVFIPEENRGTLCISTQAGCAVNCRFCS Sbjct: 62 AIIAAPAVISDHTSADGTRKWLVDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCS 121 Query: 123 TGKQGFNRNLSVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPT 182 TGKQGFNRNLSVGE+IGQLWMAEFELR+TKG+E GPKGERQITNVVMMGMGEPLLN+EPT Sbjct: 122 TGKQGFNRNLSVGEVIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPT 181 Query: 183 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLIPL 242 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQ+CAVALAVSLHASND LRDGL+PL Sbjct: 182 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPL 241 Query: 243 NKKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAAVP 302 NKKYPL ELMAACKRYLEFAPRDFVTFEYCMLDGVNDSD HAREL+ LV+ +A VP Sbjct: 242 NKKYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELIALVR-----QADVP 296 Query: 303 CKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVK 362 CKFNLIPFNPFPESGL RSHNPRIKAFAQ+LMDAGIVTT+RKTRGDDIDAACGQLAGEV+ Sbjct: 297 CKFNLIPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDIDAACGQLAGEVQ 356 Query: 363 DRTRVQERMQKMTEYQQKFGKDFGRIVEIT 392 DRTRVQ+RM+KM EYQ+KFGK+FGRIVEI+ Sbjct: 357 DRTRVQDRMKKMAEYQEKFGKNFGRIVEIS 386 >ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30807.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium IMCC9480] Length = 388 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/389 (87%), Positives = 364/389 (93%), Gaps = 3/389 (0%) Query: 4 ALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTRA 63 ALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQ+G +DF MTDLAKSLR+KL+TRA Sbjct: 2 ALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQFGASDFTAMTDLAKSLRDKLATRA 61 Query: 64 HVTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCST 123 V +PA+ISDHTSTDGTRKWL+DVG GNAVETVFIPEENRGTLCISTQAGCAVNCRFCST Sbjct: 62 VVQSPAVISDHTSTDGTRKWLLDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCST 121 Query: 124 GKQGFNRNLSVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPTV 183 GKQGFNRNL+VGEIIGQLWMAEFELRKTKG+E GPKGERQITNVVMMGMGEPLLN+EPTV Sbjct: 122 GKQGFNRNLTVGEIIGQLWMAEFELRKTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTV 181 Query: 184 TALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLIPLN 243 TALKLMLDDNAYGLSRRRVTLSTSGVVP IDKL Q+C VALAVSLHASND LRD L+PLN Sbjct: 182 TALKLMLDDNAYGLSRRRVTLSTSGVVPNIDKLGQDCPVALAVSLHASNDALRDSLVPLN 241 Query: 244 KKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAAVPC 303 KKYPL+ELMAAC RYLEFAPRDFVTFEYCMLDGVND++ HARELV LV+ G VPC Sbjct: 242 KKYPLKELMAACVRYLEFAPRDFVTFEYCMLDGVNDTEQHARELVALVRHGAQ---LVPC 298 Query: 304 KFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKD 363 KFNLIPFNPFPESGL RS+NP+IK FAQ+LMDAGIVTTIRKTRGDDIDAACGQLAGEV+D Sbjct: 299 KFNLIPFNPFPESGLTRSNNPQIKLFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEVQD 358 Query: 364 RTRVQERMQKMTEYQQKFGKDFGRIVEIT 392 RT+VQERMQKM EYQQKFGKDFGR+VE+T Sbjct: 359 RTKVQERMQKMAEYQQKFGKDFGRLVEVT 387 >ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas arsenicoxydans] sp|A4G4J9.1|RLMN_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=23S rRNA m2A2503 methyltransferase emb|CAL61436.1| putative Fe-S-cluster redox enzyme [Herminiimonas arsenicoxydans] Length = 386 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/379 (88%), Positives = 357/379 (94%), Gaps = 7/379 (1%) Query: 13 PAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTRAHVTAPAIIS 72 PAQL+AYCGELGEKPFRAKQLQRWIHQ+G +DF MTDLAKSLR+KL TRA + APA+IS Sbjct: 13 PAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAPAVIS 72 Query: 73 DHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL 132 DHTS+DGTRKWL+DVG GNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL Sbjct: 73 DHTSSDGTRKWLIDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL 132 Query: 133 SVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPTVTALKLMLDD 192 SVGEIIGQLWMAEFELR+TKG+E GPKGERQITNVVMMGMGEPLLN+EPTVTALKLMLDD Sbjct: 133 SVGEIIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDD 192 Query: 193 NAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLIPLNKKYPLQELM 252 NAYGLSRRRVTLSTSGVVPMIDKLSQ+CAVALAVSLHASND LRDGL+PLNKKYPLQELM Sbjct: 193 NAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLQELM 252 Query: 253 AACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAAVPCKFNLIPFNP 312 AACKRYLEFAPRDFVTFEYCMLDGVNDSD HAREL+ LV+ VPCKFNLIPFNP Sbjct: 253 AACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRD-------VPCKFNLIPFNP 305 Query: 313 FPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQ 372 FPESGL RS+NPRIKAFAQ+LMD G+VTTIRKTRGDDIDAACGQLAGEV+DRTRVQ+RM+ Sbjct: 306 FPESGLTRSNNPRIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQLAGEVQDRTRVQDRMK 365 Query: 373 KMTEYQQKFGKDFGRIVEI 391 KM EYQ+KFGK+FGRIVEI Sbjct: 366 KMAEYQEKFGKNFGRIVEI 384