BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0062.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776353.1| FtsH interacting integral membrane protein [... 385 e-105 ref|ZP_07677053.1| membrane protein [Ralstonia sp. 5_7_47FAA] >g... 343 1e-92 ref|YP_002981110.1| hypothetical protein Rpic12D_1146 [Ralstonia... 342 2e-92 ref|YP_001353822.1| hypothetical protein mma_2132 [Janthinobacte... 341 6e-92 ref|ZP_08275718.1| Integral membrane protein, interacts with Fts... 340 7e-92 >ref|YP_003776353.1| FtsH interacting integral membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64445.1| FtsH interacting integral membrane protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/230 (86%), Positives = 210/230 (91%), Gaps = 1/230 (0%) Query: 1 MNNYSQNTLENLNTGALARNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGF 60 MNN T + T RNRVLRNTYWLLALSMIPTVLGAWLGVQLH SLFAGSPMI F Sbjct: 1 MNNL-DTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQLHFSLFAGSPMISF 59 Query: 61 VVFMAVAFGFFYAIEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFG 120 V+F+A+AFGFFYAIEKTKNSGLGVA LLGFTFFMGLMLSRLIE+TLGFSNGA LIMTAFG Sbjct: 60 VLFLAIAFGFFYAIEKTKNSGLGVAFLLGFTFFMGLMLSRLIEFTLGFSNGAGLIMTAFG 119 Query: 121 GTALIFGVMATVATVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAI 180 GTA+IF MAT+ATVSKRDFSG+ KWLFAGVLVI+VA+LANIFLQLPALQLTIS+VAIAI Sbjct: 120 GTAIIFCGMATIATVSKRDFSGLGKWLFAGVLVILVAALANIFLQLPALQLTISMVAIAI 179 Query: 181 FSAYILFDVQQVINGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 FSAYILFDVQQV+NGGETNYISATLAIYLDVYNVF NLLSILGIVGGNRD Sbjct: 180 FSAYILFDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229 >ref|ZP_07677053.1| membrane protein [Ralstonia sp. 5_7_47FAA] gb|EFP64614.1| membrane protein [Ralstonia sp. 5_7_47FAA] Length = 233 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 174/217 (80%), Positives = 198/217 (91%), Gaps = 1/217 (0%) Query: 15 GALA-RNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGFVVFMAVAFGFFYA 73 GALA RNRVLRNTYWLLALSMIPT+LGAW+GV +L +P++GFV+FMAVAFGFFYA Sbjct: 17 GALAVRNRVLRNTYWLLALSMIPTILGAWIGVATEFNLMGRNPLMGFVIFMAVAFGFFYA 76 Query: 74 IEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFGGTALIFGVMATVA 133 IE+ KNSGLGVA+LLGFTFFMGLMLSRLI LGFSNGA LIMTAFGGTA+IFGVMATVA Sbjct: 77 IERFKNSGLGVALLLGFTFFMGLMLSRLIGMILGFSNGASLIMTAFGGTAIIFGVMATVA 136 Query: 134 TVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAIFSAYILFDVQQVI 193 TVSKRDFSG+ KWLF GVLV+IV S+ANI+LQLPA+ LTISV+AIAIFSAYILFDVQ+++ Sbjct: 137 TVSKRDFSGLGKWLFMGVLVLIVGSVANIWLQLPAMMLTISVLAIAIFSAYILFDVQRIV 196 Query: 194 NGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 NGGETNY++ATLAIYLDVYN+F NLL+ILGI GGNR+ Sbjct: 197 NGGETNYVTATLAIYLDVYNIFTNLLAILGIFGGNRN 233 >ref|YP_002981110.1| hypothetical protein Rpic12D_1146 [Ralstonia pickettii 12D] gb|ACS62438.1| protein of unknown function UPF0005 [Ralstonia pickettii 12D] Length = 233 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 173/217 (79%), Positives = 198/217 (91%), Gaps = 1/217 (0%) Query: 15 GALA-RNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGFVVFMAVAFGFFYA 73 GALA RNRVLRNTYWLLALSMIPT+LGAW+GV +L +P++GFV+FMAVAFGFFYA Sbjct: 17 GALAVRNRVLRNTYWLLALSMIPTILGAWIGVATEFNLMGRNPLMGFVIFMAVAFGFFYA 76 Query: 74 IEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFGGTALIFGVMATVA 133 IE+ KNSGLGVA+LLGFTFFMGLMLSRLI LGFSNGA L+MTAFGGTA+IFGVMATVA Sbjct: 77 IERFKNSGLGVALLLGFTFFMGLMLSRLIGMILGFSNGASLVMTAFGGTAIIFGVMATVA 136 Query: 134 TVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAIFSAYILFDVQQVI 193 TVSKRDFSG+ KWLF GVLV+IV S+ANI+LQLPA+ LTISV+AIAIFSAYILFDVQ+++ Sbjct: 137 TVSKRDFSGLGKWLFMGVLVLIVGSVANIWLQLPAMMLTISVLAIAIFSAYILFDVQRIV 196 Query: 194 NGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 NGGETNY++ATLAIYLDVYN+F NLL+ILGI GGNR+ Sbjct: 197 NGGETNYVTATLAIYLDVYNIFTNLLAILGIFGGNRN 233 >ref|YP_001353822.1| hypothetical protein mma_2132 [Janthinobacterium sp. Marseille] gb|ABR89365.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 230 Score = 341 bits (874), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 169/230 (73%), Positives = 195/230 (84%) Query: 1 MNNYSQNTLENLNTGALARNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGF 60 M+N Q + R+RVLRNTYWLLALSMIPTVLGAW+GVQ + FAGSP +G Sbjct: 1 MSNLQQQAFGSTYDTTAVRHRVLRNTYWLLALSMIPTVLGAWIGVQFKFAFFAGSPFMGM 60 Query: 61 VVFMAVAFGFFYAIEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFG 120 ++F+A+AFGFFYAIEKTKNSGLGVA+LLGFTFFMGLMLSRLI + LGF+NG LIMTAFG Sbjct: 61 IIFLAIAFGFFYAIEKTKNSGLGVALLLGFTFFMGLMLSRLIGHILGFANGTSLIMTAFG 120 Query: 121 GTALIFGVMATVATVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAI 180 GTA I MATVATVSKRDFSG+ KWLF GVLVIIVA++ANI+LQLPALQLTISVVAI I Sbjct: 121 GTAAILATMATVATVSKRDFSGLGKWLFMGVLVIIVAAIANIWLQLPALQLTISVVAIGI 180 Query: 181 FSAYILFDVQQVINGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 FSA+IL+DVQ++INGGETNY++ATL IYL VYN+F NLL++LGI GG RD Sbjct: 181 FSAFILYDVQRIINGGETNYVTATLGIYLSVYNIFSNLLALLGIFGGERD 230 >ref|ZP_08275718.1| Integral membrane protein, interacts with FtsH [Oxalobacteraceae bacterium IMCC9480] gb|EGF30805.1| Integral membrane protein, interacts with FtsH [Oxalobacteraceae bacterium IMCC9480] Length = 230 Score = 340 bits (873), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 166/230 (72%), Positives = 197/230 (85%) Query: 1 MNNYSQNTLENLNTGALARNRVLRNTYWLLALSMIPTVLGAWLGVQLHLSLFAGSPMIGF 60 MN + T + A +RV+RNTYWLLALSMIP++ GAWLGVQL+ SLFAGSP IGF Sbjct: 1 MNQHYDQTYSSPAVTRSAGHRVMRNTYWLLALSMIPSIFGAWLGVQLNFSLFAGSPFIGF 60 Query: 61 VVFMAVAFGFFYAIEKTKNSGLGVAVLLGFTFFMGLMLSRLIEYTLGFSNGAQLIMTAFG 120 ++FM +A+GFFYAIEKTK +G+GV VLLGFTFFMGLMLSRLI +TLG++NG+ L+MTAFG Sbjct: 61 MLFMGIAYGFFYAIEKTKETGMGVVVLLGFTFFMGLMLSRLIAHTLGYANGSTLVMTAFG 120 Query: 121 GTALIFGVMATVATVSKRDFSGMSKWLFAGVLVIIVASLANIFLQLPALQLTISVVAIAI 180 GTA I GVMAT+ATVSKRDFSGM +WLF G+LVI+VA++ANIFLQ+PAL L +SV+AI I Sbjct: 121 GTATIMGVMATIATVSKRDFSGMGRWLFVGMLVILVAAVANIFLQMPALYLVVSVLAIGI 180 Query: 181 FSAYILFDVQQVINGGETNYISATLAIYLDVYNVFVNLLSILGIVGGNRD 230 FSAYIL DVQQVINGGETNYI+ATL IYLDVYN+F NLL++LGI GG RD Sbjct: 181 FSAYILHDVQQVINGGETNYITATLHIYLDVYNIFANLLALLGIFGGQRD 230