BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0061.p (452 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herb... 785 0.0 ref|YP_004752565.1| 23S rRNA (uracil-5-)-methyltransferase [Coll... 740 0.0 ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [... 727 0.0 ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [... 717 0.0 ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalo... 657 0.0 >ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ64446.1| 23S rRNA (Uracil-5-)-methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 453 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/453 (82%), Positives = 407/453 (89%), Gaps = 1/453 (0%) Query: 1 MQQNII-NIKALDMDGRGVGHVANEDGTQGKVIFVEGALPGEQVSFQSYRRKPKWEAATM 59 MQQ+II IK+LDMDGRGVGH+ NEDGTQGKVIFVEGALPGE+VSFQSYR+KPKWEA M Sbjct: 1 MQQDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM 60 Query: 60 TALHRESSLRVKPQCDYFGLCGGCAMQHLEPSAQVAMKQRVLEDNLWHLSKLKAETMLRP 119 T LH ESSLRVKP+CDYFG CGGCAMQHLEPSAQVAMKQRVLEDNLWHL K KAE MLRP Sbjct: 61 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP 120 Query: 120 IYGPTWGYRYRARISVKNVVKKGTVLVGFHEKKSPFVSDMKTCEILPPHVSAMLMPLRAL 179 IYGPTWGYRYRARISV++V KKG VLVGFHEK+S F++DMKTCEILPP+VSAML+PLR L Sbjct: 121 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL 180 Query: 180 IGSLSIIDRLPQIELAIGEGDNGVKTTVMVLRVMEPPSADDELKLKAFADEHKVEWWLQP 239 + LSI DR+PQIELA+GEGD+G K TV+VLR+ME S DE+ LK+FADEHK+EWWLQ Sbjct: 181 VAGLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKSFADEHKIEWWLQT 240 Query: 240 KGPDTAHPFYPPQSNLHYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPEDR 299 KGPDTA P+YP QS L YTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQP+DR Sbjct: 241 KGPDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR 300 Query: 300 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERAAENAKVNGIAGKTAFYCRNLFEATT 359 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERA +NAKVNG+ KT+FYCRNLFEA Sbjct: 301 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP 360 Query: 360 EDFIALGKFDRMLIDPPREGALEVCKAIAGLGAQHAHLKPRRIVYVSCNPATLARDAGEL 419 EDF+ALGKFDRMLIDPPREGA+EVCKA+ L + HLKP+RIVYVSCNPATLARDAG L Sbjct: 361 EDFVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGML 420 Query: 420 VNLGGYRLTLAGVVNMFPHTAHVESMAVFDLAD 452 V+LGGY L AGVVNMFPHTAHVES+AVFDL + Sbjct: 421 VHLGGYALKYAGVVNMFPHTAHVESIAVFDLPE 453 >ref|YP_004752565.1| 23S rRNA (uracil-5-)-methyltransferase [Collimonas fungivorans Ter331] gb|AEK61742.1| 23S rRNA (uracil-5-)-methyltransferase [Collimonas fungivorans Ter331] Length = 449 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/450 (77%), Positives = 399/450 (88%), Gaps = 2/450 (0%) Query: 1 MQQNIINIKALDMDGRGVGHVANEDGTQGKVIFVEGALPGEQVSFQSYRRKPKWEAATMT 60 MQQ+ I+IK+LDMD RG+GH+ NEDG+QGKVIFVEGALPGE+VSF SYR+KPKWEAATMT Sbjct: 1 MQQDTIDIKSLDMDARGIGHLQNEDGSQGKVIFVEGALPGERVSFLSYRKKPKWEAATMT 60 Query: 61 ALHRESSLRVKPQCDYFGLCGGCAMQHLEPSAQVAMKQRVLEDNLWHLSKLKAETMLRPI 120 ALH+ES LRVKPQC FG+CGGCAMQHLEP+AQVA+KQRVLEDNLWH+ K+KAE+MLRPI Sbjct: 61 ALHKESVLRVKPQCPVFGMCGGCAMQHLEPTAQVAIKQRVLEDNLWHIGKVKAESMLRPI 120 Query: 121 YGPTWGYRYRARISVKNVVKKGTVLVGFHEKKSPFVSDMKTCEILPPHVSAMLMPLRALI 180 YGPTWGYRYRARISV+NV KKG VLVGFHE+KS F++DMKTCEILP +VSAML+PLR LI Sbjct: 121 YGPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHLI 180 Query: 181 GSLSIIDRLPQIELAIGEGDNGVKTTVMVLRVMEPPSADDELKLKAFADEHKVEWWLQPK 240 GSLS+ID +PQIELA+GEG G K T +VLR+M P+ADDE+KLKAFAD+++V WWLQ Sbjct: 181 GSLSLIDHIPQIELAVGEGPQG-KVTALVLRIMAAPTADDEIKLKAFADQYQVNWWLQTA 239 Query: 241 GPDTAHPFYPPQSNLHYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPEDRV 300 GPD+A+PFYP Q L+YTLPEFG+RMPFKPTDFTQVNHQINRVLVARALRLLDVQP +RV Sbjct: 240 GPDSAYPFYPAQGELYYTLPEFGVRMPFKPTDFTQVNHQINRVLVARALRLLDVQPHERV 299 Query: 301 ADLFCGLGNFTLPIATLAREVVGIEGSTALTERAAENAKVNGIAGKTAFYCRNLFEATTE 360 ADLFCGLGNFTLP+AT A++VVGIEGS AL RA ENA VN ++ KT F+CRNLFEA+ E Sbjct: 300 ADLFCGLGNFTLPLATQAQQVVGIEGSQALINRAGENAAVNRLSDKTTFHCRNLFEASAE 359 Query: 361 DFIALGKFDRMLIDPPREGALEVCKAIAGLGAQHAHLKPRRIVYVSCNPATLARDAGELV 420 DF+ALGKFDRMLIDPPR+GA VC+A+ GL A L P+RIVYVSCNP+TLARDAG L+ Sbjct: 360 DFVALGKFDRMLIDPPRDGAAAVCEALVGLAAIDPALMPQRIVYVSCNPSTLARDAGLLI 419 Query: 421 NLGGYRLTLAGVVNMFPHTAHVESMAVFDL 450 GGYRL+ AGVVNMFPHTAHVES+AVFDL Sbjct: 420 A-GGYRLSQAGVVNMFPHTAHVESIAVFDL 448 >ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [Herminiimonas arsenicoxydans] emb|CAL61433.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Herminiimonas arsenicoxydans] Length = 461 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/452 (76%), Positives = 392/452 (86%), Gaps = 1/452 (0%) Query: 1 MQQNIINIKALDMDGRGVGHVANEDGTQGKVIFVEGALPGEQVSFQSYRRKPKWEAATMT 60 MQQ II+I++LDM+ RGVGH+ NEDGTQGKVIFVEGALP E+V + SYR+K WEAA M Sbjct: 1 MQQTIIDIESLDMEARGVGHLQNEDGTQGKVIFVEGALPKERVVYSSYRKKANWEAAKMM 60 Query: 61 ALHRESSLRVKPQCDYFGLCGGCAMQHLEPSAQVAMKQRVLEDNLWHLSKLKAETMLRPI 120 L +ESSLRV+P+C YFG+CGGC+MQHLEP+AQVAMKQR+LEDNL H+ K+KAETMLRPI Sbjct: 61 VLLKESSLRVQPKCAYFGICGGCSMQHLEPTAQVAMKQRILEDNLKHIGKVKAETMLRPI 120 Query: 121 YGPTWGYRYRARISVKNVVKKGTVLVGFHEKKSPFVSDMKTCEILPPHVSAMLMPLRALI 180 +GPTWGYRYRARISV+NV KKG VLVGFHE+KS F++DMKTCEILP +VSAML+PLR LI Sbjct: 121 HGPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHLI 180 Query: 181 GSLSIIDRLPQIELAIGEGDNGVKTTVMVLRVMEPPSADDELKLKAFADEHKVEWWLQPK 240 GSLSIID LPQIELAIG+G+ K T +VLR+M P SA+D++KLKAFADE+KV+WWLQP Sbjct: 181 GSLSIIDHLPQIELAIGQGEQD-KITALVLRIMAPLSAEDDVKLKAFADEYKVQWWLQPA 239 Query: 241 GPDTAHPFYPPQSNLHYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPEDRV 300 GPD+A+ FYP NLHY+LPEFGI+MPFKPTDFTQVNHQINRVLVARALRLLD Q DR+ Sbjct: 240 GPDSAYQFYPEDENLHYSLPEFGIKMPFKPTDFTQVNHQINRVLVARALRLLDAQATDRI 299 Query: 301 ADLFCGLGNFTLPIATLAREVVGIEGSTALTERAAENAKVNGIAGKTAFYCRNLFEATTE 360 ADLFCGLGNFTLPIAT A EVVGIEGST LTERA ENA NG+AGKTAFY RNLFEA T+ Sbjct: 300 ADLFCGLGNFTLPIATQAGEVVGIEGSTTLTERALENAVANGLAGKTAFYSRNLFEAKTD 359 Query: 361 DFIALGKFDRMLIDPPREGALEVCKAIAGLGAQHAHLKPRRIVYVSCNPATLARDAGELV 420 DFIALGKFDRMLIDPPR+GAL VC+A+AGL A L P RIVYVSCNP+TLARDA LV Sbjct: 360 DFIALGKFDRMLIDPPRDGALAVCEALAGLNAVRPDLLPSRIVYVSCNPSTLARDAAVLV 419 Query: 421 NLGGYRLTLAGVVNMFPHTAHVESMAVFDLAD 452 N G Y L AGVVNMFPHT+HVESMAVF+L + Sbjct: 420 NEGPYVLKNAGVVNMFPHTSHVESMAVFELKE 451 >ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [Janthinobacterium sp. Marseille] gb|ABR89364.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Janthinobacterium sp. Marseille] Length = 457 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/450 (74%), Positives = 386/450 (85%), Gaps = 1/450 (0%) Query: 1 MQQNIINIKALDMDGRGVGHVANEDGTQGKVIFVEGALPGEQVSFQSYRRKPKWEAATMT 60 MQQ II+I++LDM+ RGVGH+ NEDGT GKV+FVEGALP E+V + SYR+K WEAA M Sbjct: 1 MQQTIIDIESLDMEARGVGHLQNEDGTPGKVVFVEGALPKERVVYSSYRKKANWEAAKMM 60 Query: 61 ALHRESSLRVKPQCDYFGLCGGCAMQHLEPSAQVAMKQRVLEDNLWHLSKLKAETMLRPI 120 +L +ESSLR KP+C YFG+CGGC+MQHLEPSAQVA+KQR+LEDNL H+ K+KAETMLRPI Sbjct: 61 SLIKESSLRTKPKCVYFGICGGCSMQHLEPSAQVALKQRILEDNLKHIGKVKAETMLRPI 120 Query: 121 YGPTWGYRYRARISVKNVVKKGTVLVGFHEKKSPFVSDMKTCEILPPHVSAMLMPLRALI 180 +GPTWGYRYRARISV+NV KKG VLVGFHE+KS F++DMKTCEILPP+VSAML+PLR LI Sbjct: 121 HGPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPPNVSAMLVPLRELI 180 Query: 181 GSLSIIDRLPQIELAIGEGDNGVKTTVMVLRVMEPPSADDELKLKAFADEHKVEWWLQPK 240 SLS+ID LPQIELAIG+G K T MVLR+M SADDE+KLKAFAD H+V+WWLQP Sbjct: 181 ASLSVIDHLPQIELAIGQGAQE-KVTAMVLRIMTELSADDEVKLKAFADLHQVQWWLQPA 239 Query: 241 GPDTAHPFYPPQSNLHYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPEDRV 300 GPD+A+ FYP ++NLHY LPEF ++MPFKPTDFTQVNHQINRVLVARALRLLD QP DR+ Sbjct: 240 GPDSAYQFYPTENNLHYALPEFNVKMPFKPTDFTQVNHQINRVLVARALRLLDAQPTDRI 299 Query: 301 ADLFCGLGNFTLPIATLAREVVGIEGSTALTERAAENAKVNGIAGKTAFYCRNLFEATTE 360 ADLFCGLGNFTLPIAT AREVVGIEGST LTER+ ENA NG+A KT+FYCRNLFEA E Sbjct: 300 ADLFCGLGNFTLPIATQAREVVGIEGSTTLTERSLENAVANGLADKTSFYCRNLFEAKAE 359 Query: 361 DFIALGKFDRMLIDPPREGALEVCKAIAGLGAQHAHLKPRRIVYVSCNPATLARDAGELV 420 DF+ LGKFDRMLIDPPR+GAL VC+A++ LG L P RIVYVSCNP+TLARDA LV Sbjct: 360 DFVELGKFDRMLIDPPRDGALAVCEALSELGKSQPDLLPSRIVYVSCNPSTLARDAAVLV 419 Query: 421 NLGGYRLTLAGVVNMFPHTAHVESMAVFDL 450 N G Y L AGV+NMFPHT+HVESMAVF+L Sbjct: 420 NEGLYDLKNAGVINMFPHTSHVESMAVFEL 449 >ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33385.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 434 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/439 (71%), Positives = 373/439 (84%), Gaps = 5/439 (1%) Query: 13 MDGRGVGHVANEDGTQGKVIFVEGALPGEQVSFQSYRRKPKWEAATMTALHRESSLRVKP 72 M+ RGVG++ NEDG+ GKVIFVEGALPGEQV F S+R+K KWEAA MTAL RES++RV P Sbjct: 1 MEARGVGNLVNEDGSHGKVIFVEGALPGEQVRFLSFRKKSKWEAARMTALVRESAMRVTP 60 Query: 73 QCDYFGLCGGCAMQHLEPSAQVAMKQRVLEDNLWHLSKLKAETMLRPIYGPTWGYRYRAR 132 QC YFG CGGCAMQHL+ +AQVA+KQRVLEDNLWH+ K++ MLRPIYGPTWGYRYRAR Sbjct: 61 QCAYFGTCGGCAMQHLDAAAQVAIKQRVLEDNLWHIGKVRPRLMLRPIYGPTWGYRYRAR 120 Query: 133 ISVKNVVKKGTVLVGFHEKKSPFVSDMKTCEILPPHVSAMLMPLRALIGSLSIIDRLPQI 192 +SV+NV +KG VLVGF EKKS +++DM +C+ILPP VSA+L+PLR LI +LSI++++PQI Sbjct: 121 LSVRNVPRKGGVLVGFIEKKSSYLTDMTSCDILPPKVSALLVPLRELIAALSIVEQIPQI 180 Query: 193 ELAIGEGDNGVKTTVMVLRVMEPPSADDELKLKAFADEHKVEWWLQPKGPDTAHPFYPPQ 252 ELA+GEG++GV TV+VLR+M P S DE+ LKAFAD H++ WWLQ GP++A P+YP Sbjct: 181 ELAVGEGNDGV-VTVLVLRIMAPLSRADEVLLKAFADLHQIVWWLQAAGPESAVPYYPAN 239 Query: 253 SNLHYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPEDRVADLFCGLGNFTL 312 +L Y+LPEFGI MPFKPTDFTQVNHQINRVLVARALRLLD QP++R+ADLFCGLGNFTL Sbjct: 240 QSLQYSLPEFGITMPFKPTDFTQVNHQINRVLVARALRLLDAQPDERIADLFCGLGNFTL 299 Query: 313 PIATLAREVVGIEGSTALTERAAENAKVNGIAGKTAFYCRNLFEATTEDFIALGKFDRML 372 PIAT AR VVGIEGSTALT+RA +NA+ NG+ KT+F CRNLF+ T D +ALG FDR+L Sbjct: 300 PIATQARAVVGIEGSTALTQRAMDNARFNGVQDKTSFGCRNLFDITGADLVALGYFDRLL 359 Query: 373 IDPPREGALEVCKAIAGLGAQHAHLKPRRIVYVSCNPATLARDAGELVNLGGYRLTLAGV 432 IDPPR+GA+ +C+A+A L Q A KPRRIVYVSCNPATLARDA +L+ GGY L+ AGV Sbjct: 360 IDPPRDGAMALCEALAEL--QPAQ-KPRRIVYVSCNPATLARDA-QLLVAGGYVLSQAGV 415 Query: 433 VNMFPHTAHVESMAVFDLA 451 VNMFPHTAHVESMAVFDLA Sbjct: 416 VNMFPHTAHVESMAVFDLA 434