BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0053.p (518 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752416.1| DinG family ATP-dependent helicase YoaA [Col... 900 0.0 ref|YP_001353828.1| ATP-dependent DNA helicase [Janthinobacteriu... 884 0.0 ref|YP_001099555.1| ATP-dependent helicase [Herminiimonas arseni... 883 0.0 ref|YP_003776360.1| ATP-dependent DNA helicase [Herbaspirillum s... 879 0.0 ref|ZP_08273821.1| DinG family ATP-dependent helicase YoaA [Oxal... 867 0.0 >ref|YP_004752416.1| DinG family ATP-dependent helicase YoaA [Collimonas fungivorans Ter331] gb|AEK61593.1| DinG family ATP-dependent helicase YoaA [Collimonas fungivorans Ter331] Length = 693 Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/517 (83%), Positives = 467/517 (90%), Gaps = 10/517 (1%) Query: 1 MKTTSSGDKAELSKVPENALIWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV 60 MKTTSSGDKAELSKVPE A IWNLVTSTRDTC GAECQYYQDCFVMKARKEAQQADVVVV Sbjct: 171 MKTTSSGDKAELSKVPETAPIWNLVTSTRDTCMGAECQYYQDCFVMKARKEAQQADVVVV 230 Query: 61 NHHLFFADVALKDTGVAELLPTANTVIFDEAHQLPETATMFFGDTVSTSQVLELCRDVLA 120 NHHLFFADVALKDTGVAELLP+ANT+IFDEAHQLPE AT+FFG+TVSTSQ+LELCRDVLA Sbjct: 231 NHHLFFADVALKDTGVAELLPSANTIIFDEAHQLPEVATLFFGNTVSTSQILELCRDVLA 290 Query: 121 EGLSHARDGADWAKVVAPVEKAARDLRLAFPEDIVRLAVNQIAPSSVFFPALETLRDNMD 180 EGLSHARDGADWA+VV PVEKAARDLRLAFP+D+VRLAVNQIA SS+FFPALET+R + Sbjct: 291 EGLSHARDGADWAQVVLPVEKAARDLRLAFPQDVVRLAVNQIAASSIFFPALETMRAQLH 350 Query: 181 GMIAVLEKQAERAETIEQCRTRAIELSHQLEKWNGAQDKAA----------SEDGQTYVL 230 GMIAVLEKQAERAETIEQCR+RA+EL ++L+ WN A A +ED + VL Sbjct: 351 GMIAVLEKQAERAETIEQCRSRAVELGYKLDGWNSAPAAAGKAPKKAKAGEAEDDEGSVL 410 Query: 231 WVEAFTSSLQLHRTPLSIAPIFNKQREGVPRTWIFTSATLAVKNDFHHYTSQMGLWDEPA 290 WVEAF+SSLQLH+TPLSIAPIFNKQREGV R+WIFTSATLAVKNDF HY SQMGLWDEPA Sbjct: 411 WVEAFSSSLQLHQTPLSIAPIFNKQREGVARSWIFTSATLAVKNDFQHYASQMGLWDEPA 470 Query: 291 KSWPSPFDYEQQGLLYVPNNLPQPNSYEYTDAVIDAALPAIIAAGGRTFLLCTTIRAVNR 350 +SWPSPFDY +QGLLYVP NLPQPNS +YTDAVIDAALP I A+GGR FLLCTTIRAVNR Sbjct: 471 QSWPSPFDYGEQGLLYVPQNLPQPNSPDYTDAVIDAALPVIEASGGRAFLLCTTIRAVNR 530 Query: 351 AAERLREEFEQRGLPFPLMVQGEAGRTELLDRFRASGNGVLIGSQSFWEGVDVRGDALSL 410 AERLR EFE R L FPLMVQGEAGRTELLDRFRA+GN VL+GSQSFWEGVDVRG+ALSL Sbjct: 531 VAERLRAEFEARHLDFPLMVQGEAGRTELLDRFRAAGNAVLVGSQSFWEGVDVRGEALSL 590 Query: 411 VIIDKLPFSPPDDPVLAARIAELEKKGLNGFVHHQLPAAIINLKQGAGRLIRDETDRGVL 470 VIIDKLPFSPPDDPVLAARI LE KG+NGF+HHQLPAAIINLKQGAGRLIRDETDRGVL Sbjct: 591 VIIDKLPFSPPDDPVLAARIDALESKGMNGFMHHQLPAAIINLKQGAGRLIRDETDRGVL 650 Query: 471 MICDPRLISKGYGRRIWQSLPPFKRTREIGMVEDFFA 507 MICDPRLISKGYGRRIWQSLPPFKRTRE+ V+ F++ Sbjct: 651 MICDPRLISKGYGRRIWQSLPPFKRTRELSAVQAFWS 687 >ref|YP_001353828.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] gb|ABR88311.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 669 Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/517 (83%), Positives = 471/517 (91%), Gaps = 1/517 (0%) Query: 1 MKTTSSGDKAELSKVPENALIWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV 60 MKTT SGDKAELSKVPE A IWNLVTSTRDTC GAECQYYQDCFVMKARKEAQQADVVVV Sbjct: 154 MKTTGSGDKAELSKVPETASIWNLVTSTRDTCMGAECQYYQDCFVMKARKEAQQADVVVV 213 Query: 61 NHHLFFADVALKDTGVAELLPTANTVIFDEAHQLPETATMFFGDTVSTSQVLELCRDVLA 120 NHHLFFADVALKDTGVAELLP+ANT+IFDEAHQLP+TAT+FFG+T+STSQVLELCRDVLA Sbjct: 214 NHHLFFADVALKDTGVAELLPSANTIIFDEAHQLPDTATLFFGETISTSQVLELCRDVLA 273 Query: 121 EGLSHARDGADWAKVVAPVEKAARDLRLAFPEDIVRLAVNQIAPSSVFFPALETLRDNMD 180 EGLSHARDGADWA V PVE+AARDLRL FP+DIVRLAVNQIAPSS FFPALETL++ +D Sbjct: 274 EGLSHARDGADWAGTVTPVERAARDLRLTFPQDIVRLAVNQIAPSSAFFPALETLKEQLD 333 Query: 181 GMIAVLEKQAERAETIEQCRTRAIELSHQLEKWNGAQDKAASEDGQTYVLWVEAFTSSLQ 240 MIAVL+KQAERAETIEQCR RA+EL+ +L+ WN + GQ VLWVEA+++SLQ Sbjct: 334 NMIAVLQKQAERAETIEQCRVRALELAMRLDAWNKPKTTEVI-IGQESVLWVEAYSTSLQ 392 Query: 241 LHRTPLSIAPIFNKQREGVPRTWIFTSATLAVKNDFHHYTSQMGLWDEPAKSWPSPFDYE 300 LH+TPLSIAPIFNKQREG PRTWIFTSATLAVKNDF+HY++QMGLWDEPAKSWPSPF+Y Sbjct: 393 LHQTPLSIAPIFNKQREGTPRTWIFTSATLAVKNDFNHYSAQMGLWDEPAKSWPSPFEYG 452 Query: 301 QQGLLYVPNNLPQPNSYEYTDAVIDAALPAIIAAGGRTFLLCTTIRAVNRAAERLREEFE 360 +QGLLYVP +LPQPNS EYTDAVIDAALP I AAGG FLLCTTIRAVNRAAERLREEFE Sbjct: 453 EQGLLYVPTSLPQPNSPEYTDAVIDAALPVIEAAGGGAFLLCTTIRAVNRAAERLREEFE 512 Query: 361 QRGLPFPLMVQGEAGRTELLDRFRASGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPFSP 420 +R LPFPLMVQGEAGRTELLDRFRA+GN VLIGSQSFWEGVDVRGDALS+VIIDKLPFSP Sbjct: 513 RRKLPFPLMVQGEAGRTELLDRFRAAGNAVLIGSQSFWEGVDVRGDALSVVIIDKLPFSP 572 Query: 421 PDDPVLAARIAELEKKGLNGFVHHQLPAAIINLKQGAGRLIRDETDRGVLMICDPRLISK 480 PDDPVLAARI LE+KG+NGF+HHQLPAAIINLKQGAGRLIRDE D+GVLMICDPRLISK Sbjct: 573 PDDPVLAARIEALERKGMNGFMHHQLPAAIINLKQGAGRLIRDERDKGVLMICDPRLISK 632 Query: 481 GYGRRIWQSLPPFKRTREIGMVEDFFARRAALAAAEE 517 YG+RIWQSLPPFKRTRE+ +V+DFFA A+A E Sbjct: 633 PYGKRIWQSLPPFKRTRELAVVQDFFATIDAVATGTE 669 >ref|YP_001099555.1| ATP-dependent helicase [Herminiimonas arsenicoxydans] emb|CAL61428.1| putative ATP-dependent helicase [Herminiimonas arsenicoxydans] Length = 668 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/517 (83%), Positives = 469/517 (90%), Gaps = 2/517 (0%) Query: 1 MKTTSSGDKAELSKVPENALIWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV 60 MKTTSSGDKAELSKVPE AL+WNLVTSTRDTC GAECQYYQDCFVMKARKEAQQADVVVV Sbjct: 154 MKTTSSGDKAELSKVPETALVWNLVTSTRDTCMGAECQYYQDCFVMKARKEAQQADVVVV 213 Query: 61 NHHLFFADVALKDTGVAELLPTANTVIFDEAHQLPETATMFFGDTVSTSQVLELCRDVLA 120 NHHLFFADVALKDTGVAELLP+ANT+IFDEAHQLPETAT+FFGDT+STS VLELCRDVLA Sbjct: 214 NHHLFFADVALKDTGVAELLPSANTIIFDEAHQLPETATLFFGDTISTSNVLELCRDVLA 273 Query: 121 EGLSHARDGADWAKVVAPVEKAARDLRLAFPEDIVRLAVNQIAPSSVFFPALETLRDNMD 180 EGLSHARDGADWA VV+ VE+AARDLRL FP+DIVRLAVNQIAPSS+FFPALETL+D +D Sbjct: 274 EGLSHARDGADWAGVVSKVERAARDLRLTFPQDIVRLAVNQIAPSSLFFPALETLKDELD 333 Query: 181 GMIAVLEKQAERAETIEQCRTRAIELSHQLEKWNGAQDKAASEDGQTYVLWVEAFTSSLQ 240 GMI+VL+KQAERAETIEQCR R IE++ +L+ WN + K GQ VLWVEAF+SSLQ Sbjct: 334 GMISVLQKQAERAETIEQCRVRGIEIATRLDAWN--KPKGEVIIGQESVLWVEAFSSSLQ 391 Query: 241 LHRTPLSIAPIFNKQREGVPRTWIFTSATLAVKNDFHHYTSQMGLWDEPAKSWPSPFDYE 300 LH+TPLSIAPIFNKQREGVPRTWIFTSATLAVKNDF+HY++QMGLWDEPA SWPSPFDY+ Sbjct: 392 LHQTPLSIAPIFNKQREGVPRTWIFTSATLAVKNDFNHYSAQMGLWDEPAHSWPSPFDYD 451 Query: 301 QQGLLYVPNNLPQPNSYEYTDAVIDAALPAIIAAGGRTFLLCTTIRAVNRAAERLREEFE 360 QGLLYVP LPQPNS +YTDAVIDAALP I AAGG F LCTTIRAVNR AERLREEFE Sbjct: 452 SQGLLYVPTGLPQPNSPDYTDAVIDAALPVIEAAGGGAFFLCTTIRAVNRTAERLREEFE 511 Query: 361 QRGLPFPLMVQGEAGRTELLDRFRASGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPFSP 420 +R LPFPLMVQGEAGRTELLDRFRA+GN VLIGSQSFWEGVDVRGDALS+VIIDKLPFSP Sbjct: 512 RRKLPFPLMVQGEAGRTELLDRFRAAGNAVLIGSQSFWEGVDVRGDALSVVIIDKLPFSP 571 Query: 421 PDDPVLAARIAELEKKGLNGFVHHQLPAAIINLKQGAGRLIRDETDRGVLMICDPRLISK 480 PDDPVLAARI LE+KG+NGF+HHQLPAAIINLKQGAGRLIRDETDRG+LMICDPRLI+K Sbjct: 572 PDDPVLAARIEALERKGMNGFMHHQLPAAIINLKQGAGRLIRDETDRGILMICDPRLIAK 631 Query: 481 GYGRRIWQSLPPFKRTREIGMVEDFFARRAALAAAEE 517 YG+RIWQSLPPFKRTRE+ +V F A + A E Sbjct: 632 PYGKRIWQSLPPFKRTRELDVVRTFLASMEVVLDAAE 668 >ref|YP_003776360.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gb|ADJ64452.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 747 Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/534 (79%), Positives = 463/534 (86%), Gaps = 28/534 (5%) Query: 1 MKTTSSGDKAELSKVPENALIWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV 60 +K+TSSGDKAEL+KVPE A +WNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV Sbjct: 194 VKSTSSGDKAELTKVPETASVWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV 253 Query: 61 NHHLFFADVALKDTGVAELLPTANTVIFDEAHQLPETATMFFGDTVSTSQVLELCRDVLA 120 NHHLFFADVALKDTG+AELLP+ANTVIFDEAHQLP+TAT+FFG+T+STSQ+LELCRDVLA Sbjct: 254 NHHLFFADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFFGETISTSQILELCRDVLA 313 Query: 121 EGLSHARDGADWAKVVAPVEKAARDLRLAFPEDIVRLAVNQIAPSSVFFPALETLRDNMD 180 EGLSHARDGADWA++VAPVE+AARDLRLAF ED VRLA+NQIAPSS FFPAL+TL+D MD Sbjct: 314 EGLSHARDGADWARLVAPVERAARDLRLAFSEDSVRLALNQIAPSSTFFPALDTLKDCMD 373 Query: 181 GMIAVLEKQAERAETIEQCRTRAIELSHQLEKW--------------------------- 213 MI VLEKQAERAETIEQCR RA EL QLE W Sbjct: 374 DMITVLEKQAERAETIEQCRDRANELLRQLENWGTPEELEKIQAEAAAKAAAKPAEAKRA 433 Query: 214 -NGAQDKAASEDGQTYVLWVEAFTSSLQLHRTPLSIAPIFNKQREGVPRTWIFTSATLAV 272 +G + + S YVLWVEAF SSLQLHRTPLSIAPIFNKQREG PR+WIFTSATLAV Sbjct: 434 ESGDEQQEPSGQKPFYVLWVEAFQSSLQLHRTPLSIAPIFNKQREGTPRSWIFTSATLAV 493 Query: 273 KNDFHHYTSQMGLWDEPAKSWPSPFDYEQQGLLYVPNNLPQPNSYEYTDAVIDAALPAII 332 K DF+HY +QMGLW+ PA+SWPSPF+Y +QG+LYVP NLPQPNS+EYTDAVIDAALP I Sbjct: 494 KKDFNHYAAQMGLWNAPAQSWPSPFNYGEQGILYVPQNLPQPNSFEYTDAVIDAALPIIE 553 Query: 333 AAGGRTFLLCTTIRAVNRAAERLREEFEQRGLPFPLMVQGEAGRTELLDRFRASGNGVLI 392 AAGGR F LCTT+RAVNRAAERLR EFE RG FPL VQGEAGRTELLDRFRA+GNGVLI Sbjct: 554 AAGGRCFFLCTTLRAVNRAAERLRAEFEARGHAFPLFVQGEAGRTELLDRFRAAGNGVLI 613 Query: 393 GSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARIAELEKKGLNGFVHHQLPAAIIN 452 GSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARI+E+EK+GLNGFVHHQLPAAIIN Sbjct: 614 GSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQGLNGFVHHQLPAAIIN 673 Query: 453 LKQGAGRLIRDETDRGVLMICDPRLISKGYGRRIWQSLPPFKRTREIGMVEDFF 506 LKQGAGRLIRDE DRGVLMICDPR+I+K YGRRIWQSLPPFKRTRE +V+ FF Sbjct: 674 LKQGAGRLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTREQEVVQAFF 727 >ref|ZP_08273821.1| DinG family ATP-dependent helicase YoaA [Oxalobacteraceae bacterium IMCC9480] gb|EGF32707.1| DinG family ATP-dependent helicase YoaA [Oxalobacteraceae bacterium IMCC9480] Length = 673 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/509 (81%), Positives = 461/509 (90%), Gaps = 2/509 (0%) Query: 1 MKTTSSGDKAELSKVPENALIWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVV 60 MKTTS+GDK+ELS+VPENA+IWNLVTSTRDTC GAECQYYQDCFVMKARKEAQQADVVVV Sbjct: 161 MKTTSTGDKSELSRVPENAMIWNLVTSTRDTCMGAECQYYQDCFVMKARKEAQQADVVVV 220 Query: 61 NHHLFFADVALKDTGVAELLPTANTVIFDEAHQLPETATMFFGDTVSTSQVLELCRDVLA 120 NHHLFFADVALK+TG+AELLP+ANT+IFDEAHQLP+TAT+FFG+T+STSQ++ELCRDV A Sbjct: 221 NHHLFFADVALKETGMAELLPSANTIIFDEAHQLPDTATLFFGETISTSQIIELCRDVQA 280 Query: 121 EGLSHARDGADWAKVVAPVEKAARDLRLAFPEDIVRLAVNQIAPSSVFFPALETLRDNMD 180 EGLSHARDGADWA+VVAPV+KAARDLRL+FP+D++RLAV+QIAPSS FFPAL TL+ + Sbjct: 281 EGLSHARDGADWARVVAPVDKAARDLRLSFPQDVMRLAVSQIAPSSAFFPALVTLQTELQ 340 Query: 181 GMIAVLEKQAERAETIEQCRTRAIELSHQLEKWNGAQDKAAS--EDGQTYVLWVEAFTSS 238 M+AVLEKQAERAETIE CR R IEL +QL W A D AA+ + Q VLWVEAF++S Sbjct: 341 AMVAVLEKQAERAETIELCRVRTIELGNQLAAWVVATDAAATVPDTDQENVLWVEAFSNS 400 Query: 239 LQLHRTPLSIAPIFNKQREGVPRTWIFTSATLAVKNDFHHYTSQMGLWDEPAKSWPSPFD 298 LQLH+TPLSIAPIF+KQREG PR WIFTSATLAVK DF+H+T QMGL D A+SWPSPFD Sbjct: 401 LQLHQTPLSIAPIFSKQREGSPRAWIFTSATLAVKKDFYHFTDQMGLADVTARSWPSPFD 460 Query: 299 YEQQGLLYVPNNLPQPNSYEYTDAVIDAALPAIIAAGGRTFLLCTTIRAVNRAAERLREE 358 YEQQGLLYVP+N+PQPNS +YTDAVIDAALP I AAGGRTFLLCTT+RAV+RAAERLR+E Sbjct: 461 YEQQGLLYVPHNMPQPNSPDYTDAVIDAALPIIEAAGGRTFLLCTTLRAVSRAAERLRDE 520 Query: 359 FEQRGLPFPLMVQGEAGRTELLDRFRASGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPF 418 F +R LPFPLMVQGEAGR ELLDRFRA+GN VLIGSQSFWEGVDVRGDALSLVIIDKLPF Sbjct: 521 FARRNLPFPLMVQGEAGRNELLDRFRAAGNAVLIGSQSFWEGVDVRGDALSLVIIDKLPF 580 Query: 419 SPPDDPVLAARIAELEKKGLNGFVHHQLPAAIINLKQGAGRLIRDETDRGVLMICDPRLI 478 SPPDDPVLAARIA LE+KG NGF+HHQLP AIINLKQGAGRLIRDE+DRGVLM+CDPRL+ Sbjct: 581 SPPDDPVLAARIAALERKGRNGFIHHQLPEAIINLKQGAGRLIRDESDRGVLMLCDPRLL 640 Query: 479 SKGYGRRIWQSLPPFKRTREIGMVEDFFA 507 SK YG+RIWQSLP FKRTRE V FFA Sbjct: 641 SKPYGKRIWQSLPAFKRTRERDAVLSFFA 669