BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0045.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3 component li... 537 e-150 ref|YP_001353204.1| dihydrolipoamide dehydrogenase [Janthinobact... 519 e-145 ref|YP_004752409.1| dihydrolipoamide dehydrogenase of 2-oxogluta... 509 e-142 ref|ZP_08273501.1| Dihydrolipoamide dehydrogenase of 2-oxoglutar... 506 e-141 ref|YP_001100051.1| dihydrolipoamide dehydrogenase [Herminiimona... 489 e-136 >ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3 component lipoamide dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ64455.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 276/308 (89%), Positives = 288/308 (93%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL Sbjct: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 Query: 61 LQSSEHYEHAGHAFKDHGIDVKGLSLNLPQMLGRKNTVVKQNNDGILYLFKKNKVTFFHG 120 LQSSEHYEHA H F +HGI+VKGL LNL +MLGRKNTVVKQNNDGILYLFKKNKV+FFHG Sbjct: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVSFFHG 120 Query: 121 RGSFVKGDANGYEIKVAGATEESITAKQVIVATGSNARALPGAPFDEELILSNTGALAIT 180 RGSFVKGDANGYEIKVAGA EE+ITAK VIVATGSNARALPGA FDE+LILSNTGAL+IT Sbjct: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSIT 180 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLAKQGLT 240 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLL KQGL Sbjct: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQGLA 240 Query: 241 VNLGVKIGDIKAGKKDVSVDYTDDKGNAQKAVFDKLIISIGRTPNTTGLNAEAIGLKLDE 300 VNLGVKIG IKAGK VSV+YTD KG+A FDKLI+SIGRTPNT GLNAE +GLKLDE Sbjct: 241 VNLGVKIGAIKAGKNSVSVEYTDAKGDAHTGEFDKLIVSIGRTPNTIGLNAEGVGLKLDE 300 Query: 301 RGFIAVNG 308 RGFIAV+G Sbjct: 301 RGFIAVDG 308 >ref|YP_001353204.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] gb|ABR88869.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] Length = 475 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/307 (81%), Positives = 277/307 (90%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 MSKNFDVVVIG GPGGY+AAIRAAQLGF ACIDEWKNEKGGPAPGGTCTNVGCIPSKA+ Sbjct: 1 MSKNFDVVVIGAGPGGYVAAIRAAQLGFTVACIDEWKNEKGGPAPGGTCTNVGCIPSKAM 60 Query: 61 LQSSEHYEHAGHAFKDHGIDVKGLSLNLPQMLGRKNTVVKQNNDGILYLFKKNKVTFFHG 120 LQSSE+Y HAGHAF +HGI+VKGLSLN+ +M+ RK+TVVKQNNDGILYLFKKNKVTFFHG Sbjct: 61 LQSSENYHHAGHAFAEHGIEVKGLSLNVKKMVARKDTVVKQNNDGILYLFKKNKVTFFHG 120 Query: 121 RGSFVKGDANGYEIKVAGATEESITAKQVIVATGSNARALPGAPFDEELILSNTGALAIT 180 RGSFVK G+EIK+AGATEE+I AK V+VATGSN RALPGA FDE+LILSNTGAL IT Sbjct: 121 RGSFVKAADGGHEIKIAGATEENIFAKHVVVATGSNPRALPGAAFDEKLILSNTGALEIT 180 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLAKQGLT 240 EVPK+LGVIGAGVIGLEMGSVWRRLG+EVTVLEALP FLGAVD+ +AKEA K KQGL Sbjct: 181 EVPKRLGVIGAGVIGLEMGSVWRRLGSEVTVLEALPAFLGAVDDAVAKEAFKQFTKQGLA 240 Query: 241 VNLGVKIGDIKAGKKDVSVDYTDDKGNAQKAVFDKLIISIGRTPNTTGLNAEAIGLKLDE 300 ++LGV+IG I AGK DV+V+Y DDKG AQKAVFDKLI+SIGR PNT GLNAEA+GLKLDE Sbjct: 241 ISLGVQIGAITAGKNDVTVNYVDDKGAAQKAVFDKLIVSIGRVPNTIGLNAEAVGLKLDE 300 Query: 301 RGFIAVN 307 RGFIAV+ Sbjct: 301 RGFIAVD 307 >ref|YP_004752409.1| dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [Collimonas fungivorans Ter331] gb|AEK61586.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [Collimonas fungivorans Ter331] Length = 477 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 259/308 (84%), Positives = 279/308 (90%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 MSK FDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKN K GPAPGGTCTNVGCIPSKAL Sbjct: 3 MSKQFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNAKNGPAPGGTCTNVGCIPSKAL 62 Query: 61 LQSSEHYEHAGHAFKDHGIDVKGLSLNLPQMLGRKNTVVKQNNDGILYLFKKNKVTFFHG 120 LQSSEHYEHAGHAF DHGI+VKGL LNL QML RK++VVKQNN+GILYLFKKNKVTFFHG Sbjct: 63 LQSSEHYEHAGHAFADHGIEVKGLGLNLGQMLARKDSVVKQNNEGILYLFKKNKVTFFHG 122 Query: 121 RGSFVKGDANGYEIKVAGATEESITAKQVIVATGSNARALPGAPFDEELILSNTGALAIT 180 RGSFVKGDA+ YEIKVAGA EE+ITAK +I+ATGSN RALPG PFDE+LILSNTGALAI Sbjct: 123 RGSFVKGDASAYEIKVAGAAEETITAKHIILATGSNPRALPGTPFDEKLILSNTGALAID 182 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLAKQGLT 240 VP KLGVIGAGVIGLEMGSVWRRLG++V+VLEALPTFLGAVDEQIAKEA KL KQGL Sbjct: 183 AVPAKLGVIGAGVIGLEMGSVWRRLGSDVSVLEALPTFLGAVDEQIAKEASKLFTKQGLK 242 Query: 241 VNLGVKIGDIKAGKKDVSVDYTDDKGNAQKAVFDKLIISIGRTPNTTGLNAEAIGLKLDE 300 V+LGVKIG I AGK DV+V+Y D G AQKAV+DKLI+SIGR PNT GLNAE +GL+LDE Sbjct: 243 VSLGVKIGAITAGKNDVTVEYVDAAGAAQKAVYDKLIVSIGRIPNTIGLNAEGVGLQLDE 302 Query: 301 RGFIAVNG 308 RGFIAV+G Sbjct: 303 RGFIAVDG 310 >ref|ZP_08273501.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33042.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [Oxalobacteraceae bacterium IMCC9480] Length = 499 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 256/307 (83%), Positives = 276/307 (89%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 MSKNFDVVVIGGGPGGYIAAIRAAQLGF+ ACIDEWKN GGPAPGGTCTNVGCIPSKAL Sbjct: 25 MSKNFDVVVIGGGPGGYIAAIRAAQLGFSVACIDEWKNAAGGPAPGGTCTNVGCIPSKAL 84 Query: 61 LQSSEHYEHAGHAFKDHGIDVKGLSLNLPQMLGRKNTVVKQNNDGILYLFKKNKVTFFHG 120 LQSSEH+EHAGHAF +HGIDVKGLSLNLPQML RK+TVVKQNNDGILYLFKKNK+TFFHG Sbjct: 85 LQSSEHFEHAGHAFAEHGIDVKGLSLNLPQMLSRKDTVVKQNNDGILYLFKKNKITFFHG 144 Query: 121 RGSFVKGDANGYEIKVAGATEESITAKQVIVATGSNARALPGAPFDEELILSNTGALAIT 180 RG+FVK DA+G E+ V G T ES+ AK V++ATGSNARALPG PFDE++ILSNTGALAI Sbjct: 145 RGAFVKNDASGTEVSVTGKTNESLIAKHVVIATGSNARALPGTPFDEKMILSNTGALAIG 204 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLAKQGLT 240 VPK+LGVIGAGVIGLEMGSVWRRLG+ VTVLE LPTFLGAVDEQIAKEA KL KQGL Sbjct: 205 AVPKRLGVIGAGVIGLEMGSVWRRLGSAVTVLEGLPTFLGAVDEQIAKEAFKLFTKQGLG 264 Query: 241 VNLGVKIGDIKAGKKDVSVDYTDDKGNAQKAVFDKLIISIGRTPNTTGLNAEAIGLKLDE 300 + LGVKIG I GKKDV+V+Y D KG AQKAVFDKLIISIGRTPNT GLNAEAIGLKLDE Sbjct: 265 IQLGVKIGTITTGKKDVTVEYVDAKGEAQKAVFDKLIISIGRTPNTIGLNAEAIGLKLDE 324 Query: 301 RGFIAVN 307 RGF+ V+ Sbjct: 325 RGFVVVD 331 >ref|YP_001100051.1| dihydrolipoamide dehydrogenase [Herminiimonas arsenicoxydans] emb|CAL61926.1| Dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) (Dihydrolipoamide dehydrogenase) [Herminiimonas arsenicoxydans] Length = 475 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 250/308 (81%), Positives = 274/308 (88%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 MSKNFDVVVIGGGPGGY+AAIRAAQLGF+ ACIDEWKN KGG APGGTCTNVGCIPSKAL Sbjct: 1 MSKNFDVVVIGGGPGGYVAAIRAAQLGFSVACIDEWKNAKGGAAPGGTCTNVGCIPSKAL 60 Query: 61 LQSSEHYEHAGHAFKDHGIDVKGLSLNLPQMLGRKNTVVKQNNDGILYLFKKNKVTFFHG 120 LQSSEHYEHAGHAF +HGI+VK L+LN+ +M+ RK+TVVKQNNDGILYL KKNKVTFFHG Sbjct: 61 LQSSEHYEHAGHAFAEHGIEVKDLTLNVKKMVARKDTVVKQNNDGILYLLKKNKVTFFHG 120 Query: 121 RGSFVKGDANGYEIKVAGATEESITAKQVIVATGSNARALPGAPFDEELILSNTGALAIT 180 RGSF K A GYEIKVAGA EE+I K VIVATGS R LPGA FDE++ILSNTGALA+T Sbjct: 121 RGSFAKAGAGGYEIKVAGAGEETIATKHVIVATGSTPRVLPGADFDEKMILSNTGALAMT 180 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLAKQGLT 240 EVPK+LG+IGAGVIGLEMGSVWRRLG+EVTVLEALP FLGAVDEQ+AKEAQK KQGL Sbjct: 181 EVPKRLGLIGAGVIGLEMGSVWRRLGSEVTVLEALPVFLGAVDEQVAKEAQKQFVKQGLA 240 Query: 241 VNLGVKIGDIKAGKKDVSVDYTDDKGNAQKAVFDKLIISIGRTPNTTGLNAEAIGLKLDE 300 +NLGVKIG I GK +V+V+Y DDKG AQKAVFDKLI+SIGR PNT GLN EA+GLKLDE Sbjct: 241 INLGVKIGAIAVGKNEVTVNYVDDKGAAQKAVFDKLIVSIGRIPNTVGLNTEAVGLKLDE 300 Query: 301 RGFIAVNG 308 RGFIAV+G Sbjct: 301 RGFIAVDG 308