BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0035.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08783025.1| cobalt-precorrin-6A synthase (deacetylating) ... 530 e-148 ref|YP_003776057.1| cobalamin biosynthesis CbiD transmembrane pr... 525 e-147 ref|ZP_03698512.1| cobalamin biosynthesis protein CbiD [Lutiella... 472 e-131 emb|CCA87790.1| putative cobalt-precorrin-6A synthase (deacetyla... 467 e-129 ref|YP_004847066.1| cobalamin biosynthesis protein CbiD [Pseudog... 465 e-129 >ref|ZP_08783025.1| cobalt-precorrin-6A synthase (deacetylating) [Methylobacter tundripaludum SV96] gb|EGW19670.1| cobalt-precorrin-6A synthase (deacetylating) [Methylobacter tundripaludum SV96] Length = 377 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 274/391 (70%), Positives = 310/391 (79%), Gaps = 16/391 (4%) Query: 1 MQELERAEFDLAVPAPNGLRRGRTTGSCATAAVKAALTMLLRGEKIDKAEVSLPDGKHYL 60 M + E EFDL V APNGLRRGRTTGSCATAAVKAAL +LL GE+ + +++L D HYL Sbjct: 1 MSQTELREFDLNVLAPNGLRRGRTTGSCATAAVKAALYLLLHGERHAQVQITLADDTHYL 60 Query: 61 LVPIQDVRQLDGHDGKRVRAEVLKDGGDDPDNTHGATIFAEVARNDAGEIRFKAASGVGT 120 VPIQD R L+ H RA+VLKDGGDDPDNTHGATIFAEV RN+ G+IRF A SGVGT Sbjct: 61 TVPIQDCRWLNEHTA---RADVLKDGGDDPDNTHGATIFAEVRRNNEGQIRFFAGSGVGT 117 Query: 121 ATQPGLRVAVGEPAINPVPRQMMRLAVAEVLEELNIQGETGFDLAIGCEDGQKIAQKTFN 180 ATQPGLRVAVGEPAINP PR+MMR AVAEV + + GFDL IGC +G+ IA+KTFN Sbjct: 118 ATQPGLRVAVGEPAINPTPRKMMRQAVAEVSD----NKDQGFDLIIGCINGEAIAKKTFN 173 Query: 181 PRLGIVGGISILGTSGIVEPMSLASWIASIEVYIRVALADDSKPDGVASCVAYLPGKIGR 240 PRLGIVGGISILGTSGIVEP+SLASWIASIEVY+RVAL D + +A LPGKIGR Sbjct: 174 PRLGIVGGISILGTSGIVEPLSLASWIASIEVYVRVALGGDD-----INSIALLPGKIGR 228 Query: 241 TFARDELGLPEARSVQIANFLGDALDFTQSALAEQDAALDVLWLAGHPGKLAKVLDGVWD 300 T+A++ LGLPE RSVQIANFLGDALDF Q ALAEQ LDVLWL GHPGKLAKVLDGVWD Sbjct: 229 TYAKEALGLPEQRSVQIANFLGDALDFLQQALAEQQRHLDVLWLLGHPGKLAKVLDGVWD 288 Query: 301 THSSKSNMAMGGVARVASELAAELGFSAALIADMESANTVEAAIERLKKEPGAVALWRAI 360 THSS+S+MAM VARV A E GF + L+ ++E ANTVEAA+ERLKKE GA ALW I Sbjct: 289 THSSRSDMAMSVVARV----AGERGFDSRLVQELEQANTVEAAMERLKKETGAQALWIDI 344 Query: 361 EARIAALAQARLPSVKRVEVRLFDLEGNLLG 391 E RIAAL R+P+VK+VEVRLF+L+G LG Sbjct: 345 EQRIAALVHQRVPAVKKVEVRLFNLQGESLG 375 >ref|YP_003776057.1| cobalamin biosynthesis CbiD transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64149.1| cobalamin biosynthesis CbiD transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 396 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 283/399 (70%), Positives = 315/399 (78%), Gaps = 15/399 (3%) Query: 3 ELERAEFDLAVPAPNGLRRGRTTGSCATAAVKAALTMLLRGEKIDKAEVSLPDGKHYLLV 62 EL+RAE+DLAV APNGLRRGR+TGSCATAAV+AAL LL G + + EVSLPDG+HYL V Sbjct: 6 ELQRAEYDLAVLAPNGLRRGRSTGSCATAAVRAALYRLLAGVTLQETEVSLPDGRHYLCV 65 Query: 63 PIQDVRQLDGHDGKRVRAEVLKDGGDDPDNTHGATIFAEVARNDAGEIRFKAASGVGTAT 122 P+Q V + + A+VLKDGGDDPDNTHGATIFA+V RN +GE+RF A GVGTAT Sbjct: 66 PVQAVEMIAPDIAQ---ADVLKDGGDDPDNTHGATIFAQVRRNQSGEVRFFAGQGVGTAT 122 Query: 123 QPGLRVAVGEPAINPVPRQMMRLAVAEVLEELNIQGE--TGFDLAIGCEDGQKIAQKTFN 180 PGLRVAVGEPAINPVPR MMR AVAEVL EL GE GFDL IGC +G IA KTFN Sbjct: 123 MPGLRVAVGEPAINPVPRAMMRAAVAEVLAELR-PGEPACGFDLTIGCREGVSIAPKTFN 181 Query: 181 PRLGIVGGISILGTSGIVEPMSLASWIASIEVYIRVALADDSKPDGVASCVAYLPGKIGR 240 P+LGIVGGISILGTSGIVEPMS+ASWIASIEVYIRVALA + D VA YLPGKIGR Sbjct: 182 PKLGIVGGISILGTSGIVEPMSMASWIASIEVYIRVALAACAPGDAVA----YLPGKIGR 237 Query: 241 TFARDELGLPEARSVQIANFLGDALDFTQSALAEQDAALDVLWLAGHPGKLAKVLDGVWD 300 F ELGLP+ RSVQIANFLGDALDFT+ ALAE L +LWLAGHPGKLAKVLDGVWD Sbjct: 238 VFVAQELGLPDKRSVQIANFLGDALDFTEQALAEAGRTLPLLWLAGHPGKLAKVLDGVWD 297 Query: 301 THSSKSNMAMGGVARVASEL-AAELG--FSAALIADMESANTVEAAIERLKKEPGAVA-- 355 THSSKSNMAM GVARVA E+ AAE G F A L+ M+ ANTVEA IE ++++ A+A Sbjct: 298 THSSKSNMAMQGVARVAEEMNAAESGVLFDAPLLQQMKEANTVEAIIELVRQQDAALARR 357 Query: 356 LWRAIEARIAALAQARLPSVKRVEVRLFDLEGNLLGGAA 394 LW IEARIA LAQAR+PSV R+EVRLFDLEG+ LG A Sbjct: 358 LWCEIEARIATLAQARVPSVARIEVRLFDLEGHQLGAGA 396 >ref|ZP_03698512.1| cobalamin biosynthesis protein CbiD [Lutiella nitroferrum 2002] gb|EEG08506.1| cobalamin biosynthesis protein CbiD [Lutiella nitroferrum 2002] Length = 384 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 249/389 (64%), Positives = 292/389 (75%), Gaps = 16/389 (4%) Query: 6 RAEFDLAVPAPNGLRRGRTTGSCATAAVKAALTMLLRGEKIDKAEVSLPDGKHYLLVPIQ 65 R +DLA PAPNGLRRGRTTGSCATAAVKAALT+LLRGE + + EVSLPD +YL+VP++ Sbjct: 4 RRPYDLATPAPNGLRRGRTTGSCATAAVKAALTLLLRGEAVREVEVSLPDPDYYLVVPVE 63 Query: 66 DVRQLDGHDGKRVRAEVLKDGGDDPDNTHGATIFAEVARNDAGEIRFKAASGVGTATQPG 125 V +L VRAEVLK GGDDPDNT GATIFAEV+ N++G +RF AA GVGT TQPG Sbjct: 64 KVERLTS---GAVRAEVLKYGGDDPDNTDGATIFAEVSVNNSGTLRFIAAPGVGTVTQPG 120 Query: 126 LRVAVGEPAINPVPRQMMRLAVAEVLEELNIQGETGFDLAIGCEDGQKIAQKTFNPRLGI 185 LR+ GEPAINPVPRQMM+ AV EVL N GFDLAIGC DG KIA++TFNP LGI Sbjct: 121 LRIPPGEPAINPVPRQMMQWAVDEVL---NGSTNPGFDLAIGCVDGDKIAKRTFNPMLGI 177 Query: 186 VGGISILGTSGIVEPMSLASWIASIEVYIRVALADDSKPDGVASCVAYLPGKIGRTFARD 245 +GGISILGTSGIVEPMSLA+W+ASIEVYIRVAL PD +A+ PGKIGR +A D Sbjct: 178 LGGISILGTSGIVEPMSLAAWMASIEVYIRVALGHG--PD----AIAFTPGKIGRGYAAD 231 Query: 246 ELGLPEARSVQIANFLGDALDFTQSALAEQDAALDVLWLAGHPGKLAKVLDGVWDTHSSK 305 LGL + VQIANF+G +LD+ Q L EQ A L LW+ GHPGK+AK+LDGVWDTHSSK Sbjct: 232 TLGLEKKEVVQIANFVGVSLDYAQQTLEEQQARLGTLWVLGHPGKIAKLLDGVWDTHSSK 291 Query: 306 SNMAMGGVARVASELAAELGFSAALIADMESANTVEAAIERLKKEPGAVALWRAIEARIA 365 S MAMG VA V AAE+GFSA L+A +E ANTVE ++ +K+ A W IE R+A Sbjct: 292 SGMAMGSVAAV----AAEMGFSANLVAQIEKANTVENVVQLVKEHADARGYWMEIERRVA 347 Query: 366 ALAQARLPSVKRVEVRLFDLEGNLLGGAA 394 AL ++PSV+RV VRLF ++G LG AA Sbjct: 348 ALMAPKVPSVERVAVRLFSMDGTPLGEAA 376 >emb|CCA87790.1| putative cobalt-precorrin-6A synthase (deacetylating)(cbiD) [Ralstonia syzygii R24] Length = 383 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 250/393 (63%), Positives = 288/393 (73%), Gaps = 16/393 (4%) Query: 1 MQELERAEFDLAVPAPNGLRRGRTTGSCATAAVKAALTMLLRGEKIDKAEVSLPDGKHYL 60 MQ R FDLA APNGLRRGRTTG+CATAAVKAAL L+RGE +D EVSLPD +YL Sbjct: 1 MQPPARRPFDLAALAPNGLRRGRTTGTCATAAVKAALLRLVRGETVDAVEVSLPDPDYYL 60 Query: 61 LVPIQDVRQLDGHDGKRVRAEVLKDGGDDPDNTHGATIFAEVARNDAGEIRFKAASGVGT 120 VPI V L G VRA+VLK GDDPDNT GATIFAEV+ N AGE+RF AA GVGT Sbjct: 61 EVPIARVMPLAG---GAVRADVLKFAGDDPDNTDGATIFAEVSVNHAGEVRFVAAQGVGT 117 Query: 121 ATQPGLRVAVGEPAINPVPRQMMRLAVAEVLEELNIQGETGFDLAIGCEDGQKIAQKTFN 180 TQPGLRV GEPAINPVPRQMMR+AV EVL GFDLAIGC DG++IA++TFN Sbjct: 118 VTQPGLRVPPGEPAINPVPRQMMRMAVDEVLAG---GANPGFDLAIGCVDGERIARRTFN 174 Query: 181 PRLGIVGGISILGTSGIVEPMSLASWIASIEVYIRVALADDSKPDGVASCVAYLPGKIGR 240 P LGIVGGISILGTSGIVEPMSLA+W+ASIEVY+RVAL D + +A+ PGKIGR Sbjct: 175 PMLGIVGGISILGTSGIVEPMSLAAWMASIEVYVRVALGDAPE------AIAFTPGKIGR 228 Query: 241 TFARDELGLPEARSVQIANFLGDALDFTQSALAEQDAALDVLWLAGHPGKLAKVLDGVWD 300 +A L L + + VQIANF+G +LD+ Q+AL E L LW+ GHPGKLAKVLD VWD Sbjct: 229 AYAAHTLALSKKQVVQIANFVGASLDYAQTALEEDRHRLGTLWVLGHPGKLAKVLDSVWD 288 Query: 301 THSSKSNMAMGGVARVASELAAELGFSAALIADMESANTVEAAIERLKKEPGAVALWRAI 360 THSSKS MAMG VA V AAELGF+A L+ +++ANTVE I+ L+ +PGA A WR I Sbjct: 289 THSSKSGMAMGSVAAV----AAELGFAAVLVEQIKTANTVENVIQILQHQPGAQAFWREI 344 Query: 361 EARIAALAQARLPSVKRVEVRLFDLEGNLLGGA 393 E RIAAL Q ++P RV VRLF ++G LG A Sbjct: 345 EQRIAALMQPKVPRADRVAVRLFAMDGTPLGAA 377 >ref|YP_004847066.1| cobalamin biosynthesis protein CbiD [Pseudogulbenkiania sp. NH8B] dbj|BAK76652.1| cobalamin biosynthesis protein CbiD [Pseudogulbenkiania sp. NH8B] Length = 384 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 249/391 (63%), Positives = 292/391 (74%), Gaps = 20/391 (5%) Query: 6 RAEFDLAVPAPNGLRRGRTTGSCATAAVKAALTMLLRGEKIDKAEVSLPDGKHYLLVPIQ 65 R +DLA PAPNGLRRGRTTGSCATAAVKAALT+LLRGE + + EVSLPD +YL+VP++ Sbjct: 4 RRPYDLATPAPNGLRRGRTTGSCATAAVKAALTLLLRGEAVREVEVSLPDPDYYLVVPVE 63 Query: 66 DVRQLDGHDGKRVRAEVLKDGGDDPDNTHGATIFAEVARNDAGEIRFKAASGVGTATQPG 125 V +L VRAEVLK GGDDPDNT GATIFAEV+ N++G +RF AA GVGT TQPG Sbjct: 64 KVERLTS---GAVRAEVLKYGGDDPDNTDGATIFAEVSVNNSGTLRFIAAPGVGTVTQPG 120 Query: 126 LRVAVGEPAINPVPRQMMRLAVAEVLEELNIQGET--GFDLAIGCEDGQKIAQKTFNPRL 183 LR+ GEPAINPVPRQMM+ AV EVL G T GFDLAIGC DG KIA++TFNP L Sbjct: 121 LRIPPGEPAINPVPRQMMQRAVDEVL-----AGGTNPGFDLAIGCVDGDKIAKRTFNPML 175 Query: 184 GIVGGISILGTSGIVEPMSLASWIASIEVYIRVALADDSKPDGVASCVAYLPGKIGRTFA 243 GI+GGISILGTSGIVEPMSLA+W+ASIEVYIRVAL PD +A+ PGKIGR +A Sbjct: 176 GILGGISILGTSGIVEPMSLAAWMASIEVYIRVALGHG--PD----AIAFTPGKIGRGYA 229 Query: 244 RDELGLPEARSVQIANFLGDALDFTQSALAEQDAALDVLWLAGHPGKLAKVLDGVWDTHS 303 D L L + VQIANF+G +LD+ Q L EQ A L LW+ GHPGK+AK+LDGVWDTHS Sbjct: 230 ADTLHLEKKEVVQIANFVGVSLDYAQQTLEEQQARLGTLWVLGHPGKIAKLLDGVWDTHS 289 Query: 304 SKSNMAMGGVARVASELAAELGFSAALIADMESANTVEAAIERLKKEPGAVALWRAIEAR 363 SKS MAMG VA V AAE+GFSA L+A +E ANTVE ++ +K+ A W IE R Sbjct: 290 SKSGMAMGSVAAV----AAEMGFSANLVAQIEKANTVENVVQLVKEHADARGYWMEIERR 345 Query: 364 IAALAQARLPSVKRVEVRLFDLEGNLLGGAA 394 +AAL ++PSV+RV VRLF ++G LG AA Sbjct: 346 VAALMAPKVPSVERVAVRLFSMDGTPLGEAA 376