BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0028.p (510 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08783030.1| cobaltochelatase, CobN subunit [Methylobacter... 577 e-162 ref|YP_003776061.1| cobalamin biosynthesis protein [Herbaspirill... 520 e-145 ref|ZP_03698516.1| cobaltochelatase, CobN subunit [Lutiella nitr... 427 e-117 ref|YP_003749497.1| cobalamin biosynthesis protein (cobn) [Ralst... 425 e-116 ref|YP_002257463.1| aerobic cobaltochelatase cobn subunit (parti... 423 e-116 >ref|ZP_08783030.1| cobaltochelatase, CobN subunit [Methylobacter tundripaludum SV96] gb|EGW19675.1| cobaltochelatase, CobN subunit [Methylobacter tundripaludum SV96] Length = 1408 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 275/392 (70%), Positives = 330/392 (84%), Gaps = 4/392 (1%) Query: 18 IAVLTHASTDLAILHHALTQLPGDFPATIGINLQGVENEARMSELLQSELADADIIVLRI 77 IA+LTHA DL +L +A Q+P FP GINLQ +E++A+M+ELL+ +LA A+IIVLR+ Sbjct: 12 IALLTHAPNDLMVLQNAQAQMPEGFPEVTGINLQALESDAQMAELLEHQLASANIIVLRV 71 Query: 78 LGRLGSVAGFAELLRHAQRQGRHLIALSGAGEPDAELAAVSTVPDDVLREALAYFHGGGS 137 LGRLGSV GFA+L+RHA++QG HLIA+SG GEPD ELAA STV DVL + AYF GGS Sbjct: 72 LGRLGSVPGFADLIRHAKKQGLHLIAISGTGEPDPELAAASTVSSDVLHQVQAYFQAGGS 131 Query: 138 INLAQFLRFVSDRLLLTGFAYEPAVALPDHGIYHPDLEQDAGIADWLRLRIDVAGRRKPA 197 +N+AQ LR++SD LLTG +EPAV LP+HGIYHPDL QDA I DWL LR G + + Sbjct: 132 VNMAQLLRYLSDHFLLTGVGFEPAVDLPEHGIYHPDLSQDASIEDWLALR----GPERAS 187 Query: 198 VGVIFYRAHWMSGNTRFIDALVTSLEQRGMDVLPIFTASLRTSAADSDLPAALSYFSGEK 257 G++FYRAHWMSGNTRFIDALV +LE+RG++VLP+FT+SLR D+ LP ALSYF+GE+ Sbjct: 188 AGIVFYRAHWMSGNTRFIDALVDALEKRGLNVLPVFTSSLRAGHNDNALPIALSYFNGEQ 247 Query: 258 GAHVDVLINTTSFAMGEITPGGPTPAGWSVSVLEKLNVPVLQAMTSGMTQDQWEISTRGM 317 GAH+DVLINTT+FAMGEITPGG TPAGWSVSVLE+LNVPVLQA+TSGM Q QWE S RG+ Sbjct: 248 GAHIDVLINTTAFAMGEITPGGATPAGWSVSVLEQLNVPVLQAITSGMMQHQWEQSARGL 307 Query: 318 NPLDAAMNVVLPEFDGRIISVPLSFKAQAAGLSGDVVEFHPVADRVERIAGLAARFARLR 377 NPLDAAMNVVLPEFDGRII+VPLSFKA+A+GLS +++E+ P+ DRV RIA +A+RFARL+ Sbjct: 308 NPLDAAMNVVLPEFDGRIITVPLSFKAKASGLSNELIEYEPLPDRVARIAQIASRFARLK 367 Query: 378 ALDNADKRIAFIFTNSNSKASQIGNAVGLDAP 409 LDNADKRIAF+FTNSNSKASQIGNAVGLDAP Sbjct: 368 RLDNADKRIAFVFTNSNSKASQIGNAVGLDAP 399 >ref|YP_003776061.1| cobalamin biosynthesis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64153.1| cobalamin biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 1397 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 273/415 (65%), Positives = 318/415 (76%), Gaps = 16/415 (3%) Query: 10 AASAPAARIAVLTHASTDLAILHHALTQLPGDFPATIGINLQGVENEAR--------MSE 61 A S P ARIA+LTHA TDLA+L A QLP DFPA G +LQ ++ + ++ Sbjct: 9 AMSEPLARIALLTHAPTDLAMLATARAQLPADFPAVAGYDLQRLQAADQDQASQWPSLAA 68 Query: 62 LLQSELADADIIVLRILGRLGSVAGFAELLRHAQRQGRHLIALSGAGEPDAELAAVSTVP 121 LL+ ELA A +IVLR+LGRLG+V GF E+LR + +GR LI LSG GEPD ELAA ST P Sbjct: 69 LLRGELAAAQVIVLRVLGRLGAVQGFPEMLRVVRAEGRQLIVLSGTGEPDPELAAASTAP 128 Query: 122 DDVLREALAYFHGGGSINLAQFLRFVSDRLLLTGFAYEPAVALPDHGIYHPDLEQDAGIA 181 DV ++ALAYF+GGGS+NLAQ LR +SDR+LL+G+ YEPA ALP+HG+YHPDLEQDAGIA Sbjct: 129 ADVQQQALAYFNGGGSVNLAQMLRCLSDRMLLSGYGYEPAQALPEHGLYHPDLEQDAGIA 188 Query: 182 DWLRLRIDVAGRRKPAVGVIFYRAHWMSGNTRFIDALVTSLEQRGMDVLPIFTASLRTSA 241 DWL LR A KPAVG+IFYRAHW+SGNT FIDALV +LE RG+DVLP+FT+SLR SA Sbjct: 189 DWLALRAQ-APAGKPAVGIIFYRAHWLSGNTAFIDALVAALEARGLDVLPVFTSSLRVSA 247 Query: 242 ADSD-LPAALSYFSGEKGAHVDVLINTTSFAMGEITPGGPTPAGWSVSVLEKLNVPVLQA 300 LP AL YF VD++INTTSFAMGEIT GG TPAGWSVSVLE+L++PVLQA Sbjct: 248 GGGQALPPALQYFG---AGQVDLIINTTSFAMGEITAGGVTPAGWSVSVLEQLDLPVLQA 304 Query: 301 MTSGMTQDQWEISTRGMNPLDAAMNVVLPEFDGRIISVPLSFKAQAAGLSGDVVEFHPVA 360 +TSGMTQ QW+ STRGMNPLDAAMNVVLPEFDGRII VPLSFK V++ P+ Sbjct: 305 ITSGMTQAQWQHSTRGMNPLDAAMNVVLPEFDGRIIGVPLSFKETT---DSGAVQYQPLP 361 Query: 361 DRVERIAGLAARFARLRALDNADKRIAFIFTNSNSKASQIGNAVGLDAPPTRAAT 415 DRV RIAGLA R RLR+ NA+KRIAFIFTNS+SKASQIGNAVGLDAP + A Sbjct: 362 DRVRRIAGLAQRLVRLRSTPNANKRIAFIFTNSSSKASQIGNAVGLDAPESLMAV 416 >ref|ZP_03698516.1| cobaltochelatase, CobN subunit [Lutiella nitroferrum 2002] gb|EEG08510.1| cobaltochelatase, CobN subunit [Lutiella nitroferrum 2002] Length = 1377 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/392 (55%), Positives = 277/392 (70%), Gaps = 12/392 (3%) Query: 18 IAVLTHASTDLAILHHALTQLPGDFPATIGINLQGVENEARMSELLQSELADADIIVLRI 77 I +LTHA TDL LH A T+LP F G+NLQ V++ RM+ LL +AD I+V+R+ Sbjct: 9 IVLLTHAGTDLTALHRAETELPEGFVPVAGVNLQTVDSAERMAALLAGTIADTRIVVVRV 68 Query: 78 LGRLGSVAGFAELLRHAQRQGRHLIALSGAGEPDAELAAVSTVPDDVLREALAYFHGGGS 137 LGR ++ GF ELL+ A+ + R LI +SG GEPD ELAA+S+VP + E AY GGS Sbjct: 69 LGRAQTIPGFEELLKDAKARERALIVVSGTGEPDPELAALSSVPPALQHEVTAYLQAGGS 128 Query: 138 INLAQFLRFVSDRLLLTGFAYEPAVALPDHGIYHPDLEQDAGIADWLRLRIDVAGRRKPA 197 N+AQ LR +SDRLL++GF Y+P LP+HGIYHP+L A + DW +R P Sbjct: 129 GNMAQLLRCLSDRLLMSGFGYQPPTPLPEHGIYHPELSGLATLDDWAAIR----QPDWPT 184 Query: 198 VGVIFYRAHWMSGNTRFIDALVTSLEQRGMDVLPIFTASLRTSAADSDLPAALSYFSGEK 257 VG+ FYRAHWMSGNTRFID LV L +R ++ LP++TASLRT ++ +PAAL +FS Sbjct: 185 VGITFYRAHWMSGNTRFIDMLVDMLAERRLNALPVYTASLRT-LDETGMPAALQFFS--D 241 Query: 258 GAHVDVLINTTSFAMGEITPGGPTPAGWSVSVLEKLNVPVLQAMTSGMTQDQWEISTRGM 317 +D LINTTSFAMG++ GPT +GWSV+ E+L++PV+QA+TS MTQ QWE S RG+ Sbjct: 242 IGRIDALINTTSFAMGDVNADGPTASGWSVAAFERLDIPVIQAITSSMTQQQWEASERGL 301 Query: 318 NPLDAAMNVVLPEFDGRIISVPLSFKAQAAGLSGDVVEFHPVADRVERIAGLAARFARLR 377 NPLD AMNV LPEFDGRI+SVP+SFK D + P+ADRV R+AG+AAR LR Sbjct: 302 NPLDTAMNVALPEFDGRIVSVPMSFKHDE-----DETHYAPLADRVRRVAGIAARQVALR 356 Query: 378 ALDNADKRIAFIFTNSNSKASQIGNAVGLDAP 409 + +KRIAFIFTNSNSKASQIGNAVGLD+P Sbjct: 357 RIPAENKRIAFIFTNSNSKASQIGNAVGLDSP 388 >ref|YP_003749497.1| cobalamin biosynthesis protein (cobn) [Ralstonia solanacearum PSI07] emb|CBJ34854.1| putative cobalamin biosynthesis protein (cobN) [Ralstonia solanacearum PSI07] Length = 1365 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 217/392 (55%), Positives = 279/392 (71%), Gaps = 10/392 (2%) Query: 18 IAVLTHASTDLAILHHALTQLPGDFPATIGINLQGVENEARMSELLQSELADADIIVLRI 77 I +LTHA TDL+ L A QLP F + GI+LQ ++ +ARM++LL +ADA I+++R+ Sbjct: 9 IVLLTHAGTDLSTLQRATAQLPDGFASVSGIHLQTIDRDARMADLLAGPVADARIVIVRV 68 Query: 78 LGRLGSVAGFAELLRHAQRQGRHLIALSGAGEPDAELAAVSTVPDDVLREALAYFHGGGS 137 LGRL ++ G L+ A+ QGR L+ +SG GEPD ELAA STVP + +E AY GG+ Sbjct: 69 LGRLQAIPGIDALIHDARAQGRALVIVSGTGEPDPELAARSTVPPSLQQEVAAYLQAGGT 128 Query: 138 INLAQFLRFVSDRLLLTGFAYEPAVALPDHGIYHPDLEQDAGIADWLRLRIDVAGRRKPA 197 NLAQ LR +SDRLL+TGF Y+P +ALP+HGIYHP+L A + DW +R P Sbjct: 129 GNLAQLLRCLSDRLLMTGFGYQPPMALPEHGIYHPELASPATLEDWAAIR----NPAWPT 184 Query: 198 VGVIFYRAHWMSGNTRFIDALVTSLEQRGMDVLPIFTASLRTSAADSDLPAALSYFSGEK 257 VG+ FYRAHW+ GNTRFID LV +L +R ++ LP++TASLRT A S +PAAL F+ + Sbjct: 185 VGITFYRAHWLCGNTRFIDLLVDALAERQLNALPVYTASLRTLDA-SGMPAALGVFADDG 243 Query: 258 GAHVDVLINTTSFAMGEITPGGPTPAGWSVSVLEKLNVPVLQAMTSGMTQDQWEISTRGM 317 +D L+NTTSFAMG++ GPT AGWSV+ E+L+VPV+QA+ S MTQ QW S RG+ Sbjct: 244 IGRIDALVNTTSFAMGDVNADGPTAAGWSVAAFERLDVPVIQAIASSMTQAQWAASERGL 303 Query: 318 NPLDAAMNVVLPEFDGRIISVPLSFKAQAAGLSGDVVEFHPVADRVERIAGLAARFARLR 377 NPLD AMNV LPEFDGRI+SVP+SFK + D + P+ DRV R+AG+AAR LR Sbjct: 304 NPLDTAMNVALPEFDGRIVSVPMSFKDEH-----DETAYAPLPDRVRRVAGIAARQVALR 358 Query: 378 ALDNADKRIAFIFTNSNSKASQIGNAVGLDAP 409 ADKRIAF+FTNS+SKASQIGNAVGLD+P Sbjct: 359 RTPVADKRIAFLFTNSSSKASQIGNAVGLDSP 390 >ref|YP_002257463.1| aerobic cobaltochelatase cobn subunit (partial sequence, n terminus) protein [Ralstonia solanacearum IPO1609] emb|CAQ59348.1| aerobic cobaltochelatase cobn subunit (partial sequence, n terminus) protein [Ralstonia solanacearum IPO1609] Length = 1014 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/392 (54%), Positives = 276/392 (70%), Gaps = 10/392 (2%) Query: 18 IAVLTHASTDLAILHHALTQLPGDFPATIGINLQGVENEARMSELLQSELADADIIVLRI 77 I +LTHA TDL+ L A LP FP+ G++LQ ++ ARM++LL +A A I+++R+ Sbjct: 9 IVLLTHAGTDLSTLQRATAHLPDGFPSVSGLHLQTIDTGARMADLLAGPIAGARIVIVRV 68 Query: 78 LGRLGSVAGFAELLRHAQRQGRHLIALSGAGEPDAELAAVSTVPDDVLREALAYFHGGGS 137 LGRL ++ G LL A+ QGR L+ +SG GEPD ELAA STVP + +E AY GG+ Sbjct: 69 LGRLQAIPGIDALLHDARAQGRALVIVSGTGEPDPELAARSTVPPSLQQEVAAYLQAGGT 128 Query: 138 INLAQFLRFVSDRLLLTGFAYEPAVALPDHGIYHPDLEQDAGIADWLRLRIDVAGRRKPA 197 NLAQ LR +SDRLL+TGF Y+P VALP+HGIYHP+L A + DW +R P Sbjct: 129 GNLAQLLRCLSDRLLMTGFGYQPPVALPEHGIYHPELAAPAALEDWAAIR----NPAWPT 184 Query: 198 VGVIFYRAHWMSGNTRFIDALVTSLEQRGMDVLPIFTASLRTSAADSDLPAALSYFSGEK 257 VG+ FYRAHW+ GNTRFID LV +L +R ++ LP++TASLRT A S +PAAL +F+ + Sbjct: 185 VGITFYRAHWLCGNTRFIDLLVDALAERQLNALPVYTASLRTLDA-SGMPAALGFFAADG 243 Query: 258 GAHVDVLINTTSFAMGEITPGGPTPAGWSVSVLEKLNVPVLQAMTSGMTQDQWEISTRGM 317 +D L+NTTSFAMG++ GPT AGWSV+ +L+VPV+QA+ S MTQ QW S RG+ Sbjct: 244 IGRIDALVNTTSFAMGDVNADGPTAAGWSVAAFARLDVPVVQAIASSMTQAQWAASERGL 303 Query: 318 NPLDAAMNVVLPEFDGRIISVPLSFKAQAAGLSGDVVEFHPVADRVERIAGLAARFARLR 377 NPLD AMNV LPEFDGRI+SVP+SFK + D + P+ DRV R+AG+ AR LR Sbjct: 304 NPLDTAMNVALPEFDGRIVSVPMSFKDEH-----DETAYAPLPDRVRRVAGIVARQVALR 358 Query: 378 ALDNADKRIAFIFTNSNSKASQIGNAVGLDAP 409 ADKRIAF+FTNS+SKASQIGNAVGLD+P Sbjct: 359 RTPAADKRIAFLFTNSSSKASQIGNAVGLDSP 390