BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0007.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02377100.1| Extracellular ligand-binding receptor [Burkho... 344 1e-92 ref|YP_004348442.1| extracellular ligand-binding receptor [Burkh... 342 7e-92 ref|YP_775394.1| extracellular ligand-binding receptor [Burkhold... 341 1e-91 ref|YP_004828750.1| Extracellular ligand-binding receptor [Enter... 340 2e-91 ref|YP_001810670.1| extracellular ligand-binding receptor [Burkh... 340 3e-91 >ref|ZP_02377100.1| Extracellular ligand-binding receptor [Burkholderia ubonensis Bu] Length = 388 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 176/366 (48%), Positives = 237/366 (64%) Query: 16 ALLSVAATAEDRTVLIGYAAPLTGASGSIGASLVQAAEIAVEDANRQGLHINGDKLVFKL 75 A S A + +T+LIG AAPLTG S IG L A++A++DAN + I G +V+KL Sbjct: 19 ASTSAVAQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPSIGGKPVVYKL 78 Query: 76 LVQDDRSDMRTGLLVADYLVKSGVVGVIGHWNSGVGIPASRIYNKAEVVQIAQATTSHAY 135 + DD+SD RT + VA LV VVGV+GHWN+G +PASR+Y A + QIA A+T H Y Sbjct: 79 VAADDQSDPRTAVAVAQQLVDKHVVGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQY 138 Query: 136 TQQSFPTAFRIVPHDDENAYYTAEYVVRQLKAQRIAIIDDQTPFGNGYARQFAQSVESFK 195 TQQ + TAFRI+ HDD +T Y V+ LKA+RIA+IDD+T FG G A QF + VE+ Sbjct: 139 TQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVEASG 198 Query: 196 GNIVSQYGISSRTSDFNAVLKNIRQQNPDAVFFGGLDAQAGQLARELRRFGIEAPLIGVG 255 G IV + ++ +T+DF+ VL I+ + D VFFGGLDAQA LAR +R+ G+ APL+G G Sbjct: 199 GAIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPLARRMRQLGVNAPLLGAG 258 Query: 256 GTVGPQFLKAAGEAGNGTIALEPGPASYKGAQWQQFDKAYKSRHGDDMGLYAPFSYDAVQ 315 G V FL AG+ G G ALEPG + FD Y+SR+ + L+APF+YDA Sbjct: 259 GFVSQTFLSLAGKDGEGVTALEPGLPLARMPGGSAFDAQYQSRYHAPIELHAPFAYDAAA 318 Query: 316 VLVAAIRQANSLERHRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTIYQVRNQKWTPLK 375 L+AA ++A + + ++VAA+ + G+TG +AFD GNL NP FTIYQVR KWT + Sbjct: 319 TLIAATQKAGTTQPAKLVAAVRAIDRPGVTGRIAFDGAGNLNNPAFTIYQVRGGKWTVVD 378 Query: 376 TIGGKK 381 +GG + Sbjct: 379 VLGGAR 384 >ref|YP_004348442.1| extracellular ligand-binding receptor [Burkholderia gladioli BSR3] gb|AEA62930.1| extracellular ligand-binding receptor [Burkholderia gladioli BSR3] Length = 399 Score = 342 bits (877), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 168/353 (47%), Positives = 237/353 (67%) Query: 27 RTVLIGYAAPLTGASGSIGASLVQAAEIAVEDANRQGLHINGDKLVFKLLVQDDRSDMRT 86 +TVLIG AAPLTG S IG L A++A++DANR+ I+G +V+KL+ DD+SD RT Sbjct: 37 QTVLIGLAAPLTGPSARIGKDLQNGAQLALDDANRRHPTIDGKPVVYKLVAVDDQSDPRT 96 Query: 87 GLLVADYLVKSGVVGVIGHWNSGVGIPASRIYNKAEVVQIAQATTSHAYTQQSFPTAFRI 146 + VA LV+ V+GV+GHWN+G +PA+R+Y A + +IA A+T H YTQQ + TAFRI Sbjct: 97 AVTVAQDLVEQHVIGVVGHWNTGCSVPAARVYRDAGIPEIAPASTGHQYTQQGYATAFRI 156 Query: 147 VPHDDENAYYTAEYVVRQLKAQRIAIIDDQTPFGNGYARQFAQSVESFKGNIVSQYGISS 206 + HDD YT Y V+ L A+RIA++DD+T FG+G A QF + VE+ G IV + ++ Sbjct: 157 MGHDDTGGAYTGAYAVKTLHARRIAVLDDRTSFGSGLADQFVKGVEANGGTIVDRQYVTD 216 Query: 207 RTSDFNAVLKNIRQQNPDAVFFGGLDAQAGQLARELRRFGIEAPLIGVGGTVGPQFLKAA 266 +T+DF+ VL I+ + PD VFFGGLDAQA +AR + + GI+A L+G GG V FL A Sbjct: 217 KTTDFSGVLTAIKSKRPDLVFFGGLDAQAAPIARRMHQLGIDATLLGAGGFVSQTFLSLA 276 Query: 267 GEAGNGTIALEPGPASYKGAQWQQFDKAYKSRHGDDMGLYAPFSYDAVQVLVAAIRQANS 326 G+ G G ALEPG K FD Y++R+ + L+APF+YDA L+A Q+ S Sbjct: 277 GKDGEGVTALEPGRPLAKMPGGPAFDAQYRARYHAPIELHAPFAYDAAATLIAVAEQSKS 336 Query: 327 LERHRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTIYQVRNQKWTPLKTIGG 379 + ++VAA+H+V G+TG +AFDE+GNL +P +TIY+V+ KW+ + +GG Sbjct: 337 TDPAKLVAALHKVDRQGVTGRIAFDEQGNLKDPAYTIYRVQGGKWSVVDVLGG 389 >ref|YP_775394.1| extracellular ligand-binding receptor [Burkholderia ambifaria AMMD] gb|ABI89060.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia ambifaria AMMD] Length = 388 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 171/360 (47%), Positives = 237/360 (65%) Query: 22 ATAEDRTVLIGYAAPLTGASGSIGASLVQAAEIAVEDANRQGLHINGDKLVFKLLVQDDR 81 A + +T+LIG AAPLTG S IG L A++A++DAN + I G +V+KL+ DD+ Sbjct: 25 AQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAEHPSIGGKPVVYKLVAADDQ 84 Query: 82 SDMRTGLLVADYLVKSGVVGVIGHWNSGVGIPASRIYNKAEVVQIAQATTSHAYTQQSFP 141 SD RT + VA LV V+GV+GHWN+G +PASR+Y A + QIA A+T H YTQQ + Sbjct: 85 SDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYA 144 Query: 142 TAFRIVPHDDENAYYTAEYVVRQLKAQRIAIIDDQTPFGNGYARQFAQSVESFKGNIVSQ 201 TAFRI+ HDD +T Y V+ LKA+RIA+IDD+T FG G A QF + V++ G IV + Sbjct: 145 TAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVQANGGTIVDR 204 Query: 202 YGISSRTSDFNAVLKNIRQQNPDAVFFGGLDAQAGQLARELRRFGIEAPLIGVGGTVGPQ 261 ++ +T+DF+ VL I+ + D VFFGGLDAQA +AR +R+ G+ APL+G GG V Sbjct: 205 QYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGAGGFVSQT 264 Query: 262 FLKAAGEAGNGTIALEPGPASYKGAQWQQFDKAYKSRHGDDMGLYAPFSYDAVQVLVAAI 321 FL AG+ G G ALEPG + FD Y++R + L+APF+YDA L+AA+ Sbjct: 265 FLSLAGKDGEGVTALEPGLPLDRMPGGNAFDAQYRARWHAPIELHAPFAYDAAATLIAAV 324 Query: 322 RQANSLERHRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTIYQVRNQKWTPLKTIGGKK 381 ++A S + ++VAA+ + G+TG VAFD++GNL +P FTIYQVR KWT + +GG + Sbjct: 325 QKAGSTQPAKVVAAVRAIDRPGVTGRVAFDQQGNLKDPAFTIYQVRGGKWTVVDVLGGGR 384 >ref|YP_004828750.1| Extracellular ligand-binding receptor [Enterobacter asburiae LF7a] gb|AEN64965.1| Extracellular ligand-binding receptor [Enterobacter asburiae LF7a] Length = 385 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 172/380 (45%), Positives = 248/380 (65%), Gaps = 5/380 (1%) Query: 7 LKLLCFGAAALLSVAAT-----AEDRTVLIGYAAPLTGASGSIGASLVQAAEIAVEDANR 61 +K+ AA LLS A+ A+ TV+IG A PLTG S IG L A++A++D N+ Sbjct: 4 VKISALSAAILLSGFASTGAWAADSETVVIGLAGPLTGPSARIGKDLENGAQLAIDDINK 63 Query: 62 QGLHINGDKLVFKLLVQDDRSDMRTGLLVADYLVKSGVVGVIGHWNSGVGIPASRIYNKA 121 Q I G + FKL +DD+SD RT + VA LV SGV GV+GHWN+G IPA+R+Y+ A Sbjct: 64 QHPTIGGKAVTFKLQSEDDQSDPRTAVAVAQRLVDSGVAGVVGHWNTGTSIPAARVYHDA 123 Query: 122 EVVQIAQATTSHAYTQQSFPTAFRIVPHDDENAYYTAEYVVRQLKAQRIAIIDDQTPFGN 181 + Q+A T HAYT+Q F T+FR++ HDD+ + +Y V LKA+RIA+IDD+T FG Sbjct: 124 GIAQVAPVATGHAYTKQGFDTSFRVMGHDDDGGQFAGQYAVNTLKAKRIAVIDDRTAFGQ 183 Query: 182 GYARQFAQSVESFKGNIVSQYGISSRTSDFNAVLKNIRQQNPDAVFFGGLDAQAGQLARE 241 G A +F +S+E+ IV + + +T DF+AVL IR +N D +FFGG+D+QA LAR Sbjct: 184 GLADEFIKSLEAQGVKIVDRQYVDDKTVDFSAVLTAIRSKNADLIFFGGVDSQAAPLARR 243 Query: 242 LRRFGIEAPLIGVGGTVGPQFLKAAGEAGNGTIALEPGPASYKGAQWQQFDKAYKSRHGD 301 +++ G+ A L+G GG V FL+ A + G G +ALEPG + + F++AY+SR+ Sbjct: 244 IKQLGMNATLMGAGGFVSQTFLQLAQKEGEGVVALEPGLPVDQMPGGKAFEQAYQSRYHT 303 Query: 302 DMGLYAPFSYDAVQVLVAAIRQANSLERHRIVAAMHQVRHNGLTGPVAFDEEGNLANPVF 361 + L+APF+YDA +VLVAA+ +ANS++ + A+ + ++G+TG +AFD EGNL P F Sbjct: 304 HIELHAPFAYDATRVLVAAMEKANSVDPSEYLPALRAINYSGVTGQIAFDNEGNLKAPSF 363 Query: 362 TIYQVRNQKWTPLKTIGGKK 381 T+Y+V + KW P +GG K Sbjct: 364 TVYKVVDGKWQPQTVLGGTK 383 >ref|YP_001810670.1| extracellular ligand-binding receptor [Burkholderia ambifaria MC40-6] gb|ACB66454.1| Extracellular ligand-binding receptor [Burkholderia ambifaria MC40-6] Length = 388 Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 170/360 (47%), Positives = 237/360 (65%) Query: 22 ATAEDRTVLIGYAAPLTGASGSIGASLVQAAEIAVEDANRQGLHINGDKLVFKLLVQDDR 81 A + +T+LIG AAPLTG S IG L A++A++DAN + I G +V+KL+ DD+ Sbjct: 25 AQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPSIGGKPVVYKLVAADDQ 84 Query: 82 SDMRTGLLVADYLVKSGVVGVIGHWNSGVGIPASRIYNKAEVVQIAQATTSHAYTQQSFP 141 SD RT + VA LV V+GV+GHWN+G +PASR+Y A + QIA A+T H YTQQ + Sbjct: 85 SDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIAQIAPASTGHQYTQQGYA 144 Query: 142 TAFRIVPHDDENAYYTAEYVVRQLKAQRIAIIDDQTPFGNGYARQFAQSVESFKGNIVSQ 201 TAFRI+ HDD +T Y V+ LKA+RIA+IDD+T FG G A QF + V++ G IV + Sbjct: 145 TAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVQANGGTIVDR 204 Query: 202 YGISSRTSDFNAVLKNIRQQNPDAVFFGGLDAQAGQLARELRRFGIEAPLIGVGGTVGPQ 261 ++ +T+DF+ VL I+ + D VFFGGLDAQA +AR +R+ G+ APL+G GG V Sbjct: 205 QYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVSAPLLGAGGFVSQT 264 Query: 262 FLKAAGEAGNGTIALEPGPASYKGAQWQQFDKAYKSRHGDDMGLYAPFSYDAVQVLVAAI 321 FL AG+ G G ALEPG + FD Y++R + L+APF+YDA L+AA+ Sbjct: 265 FLSLAGKDGEGVTALEPGLPLDRMPGGNAFDAQYRARWHAPIELHAPFAYDAAATLIAAV 324 Query: 322 RQANSLERHRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTIYQVRNQKWTPLKTIGGKK 381 ++A + + ++VAA+ + G+TG VAFD++GNL +P FTIYQVR KWT + +GG + Sbjct: 325 QKAGTTQPAKVVAAVRAIDRPGVTGRVAFDQQGNLKDPAFTIYQVRGGKWTVVDVLGGAR 384