BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0006.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_558804.1| hypothetical protein Bxe_A2217 [Burkholderia xe...   171   4e-41
ref|YP_003776072.1| Fe-S protein [Herbaspirillum seropedicae SmR...   170   8e-41
ref|ZP_06845359.1| MOSC domain protein beta barrel domain protei...   169   1e-40
ref|ZP_02358317.1| hypothetical protein BoklE_22799 [Burkholderi...   168   3e-40
ref|ZP_02365379.1| mosc domain protein [Burkholderia oklahomensi...   167   4e-40

>ref|YP_558804.1| hypothetical protein Bxe_A2217 [Burkholderia xenovorans LB400]
 gb|ABE30752.1| Hypothetical iron-sulfur binding protein, MOSC domain protein
           [Burkholderia xenovorans LB400]
          Length = 291

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 100/132 (75%), Gaps = 1/132 (0%)

Query: 1   VGEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSF-GPAGREVVLRL 59
           +G+ASL DLN RL  KGAPA+P+DRFRPN+VL+GL+AYEEDY++TLS  G AG  V L+L
Sbjct: 158 IGQASLDDLNTRLNSKGAPAIPIDRFRPNVVLTGLDAYEEDYVETLSVNGDAGENVQLQL 217

Query: 60  VKPCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAIVVQGWGNLL 119
           VKPC+RCP+P IDQ  G  D DWP+EP DTM+VYRAN +  G +TFG NA+V  G G  L
Sbjct: 218 VKPCSRCPMPTIDQAKGAPDPDWPNEPTDTMSVYRANPQRNGAITFGNNALVASGAGQWL 277

Query: 120 AVGQDVAGELAF 131
            VGQ V  EL F
Sbjct: 278 RVGQSVEAELGF 289


>ref|YP_003776072.1| Fe-S protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64164.1| Fe-S protein [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  170 bits (430), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 106/131 (80%), Gaps = 4/131 (3%)

Query: 1   VGEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSFGPAGREVVLRLV 60
           +G+ASL+DLN RL  KGAPAL M+RFRPNLV+SGL+AY+ED++ TL+ GP    V LRLV
Sbjct: 154 IGQASLEDLNARLTAKGAPALGMERFRPNLVISGLDAYDEDHISTLTLGP----VELRLV 209

Query: 61  KPCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAIVVQGWGNLLA 120
           KPCARCP+PGIDQ+TGLRDA WPDEPLDT+A YRA+ RV GGLTFGQNAIV  G G ++ 
Sbjct: 210 KPCARCPIPGIDQRTGLRDARWPDEPLDTLAGYRADPRVDGGLTFGQNAIVTGGEGGVIE 269

Query: 121 VGQDVAGELAF 131
           VGQ V  E  F
Sbjct: 270 VGQAVQWEWNF 280


>ref|ZP_06845359.1| MOSC domain protein beta barrel domain protein [Burkholderia sp.
           Ch1-1]
 gb|EFG67023.1| MOSC domain protein beta barrel domain protein [Burkholderia sp.
           Ch1-1]
          Length = 291

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 100/132 (75%), Gaps = 1/132 (0%)

Query: 1   VGEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSF-GPAGREVVLRL 59
           +G+ASL DLN RL  KGAPA+P+DRFRPN+VL+GL+AYEEDY++TLS  G AG  V L+L
Sbjct: 158 IGQASLDDLNTRLNGKGAPAIPIDRFRPNVVLTGLDAYEEDYVETLSVDGDAGENVQLQL 217

Query: 60  VKPCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAIVVQGWGNLL 119
           VKPC+RCP+P IDQ  G  D DWP+EP DTM+VYRAN +  G +TFG NA+V  G G  L
Sbjct: 218 VKPCSRCPMPTIDQAKGAPDPDWPNEPTDTMSVYRANPQRDGAITFGNNALVASGAGQWL 277

Query: 120 AVGQDVAGELAF 131
            VGQ V  EL F
Sbjct: 278 RVGQSVEAELGF 289


>ref|ZP_02358317.1| hypothetical protein BoklE_22799 [Burkholderia oklahomensis EO147]
          Length = 291

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 98/131 (74%)

Query: 1   VGEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSFGPAGREVVLRLV 60
           VG++SL DLN RL++KGAPA+PMDRFRPN+VL+GL+AYEEDY+D L        V L LV
Sbjct: 159 VGQSSLDDLNARLRRKGAPAVPMDRFRPNVVLTGLDAYEEDYVDYLDVQTGNGGVRLSLV 218

Query: 61  KPCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAIVVQGWGNLLA 120
           K C RCPVP IDQ+TG  D  WP+EPLDTM+VYR N +  G LTFG+NAIVV G G  L 
Sbjct: 219 KLCTRCPVPTIDQRTGAPDPGWPNEPLDTMSVYRGNAQFDGALTFGKNAIVVNGEGAFLE 278

Query: 121 VGQDVAGELAF 131
           +GQ V  E+AF
Sbjct: 279 IGQSVDAEIAF 289


>ref|ZP_02365379.1| mosc domain protein [Burkholderia oklahomensis C6786]
          Length = 206

 Score =  167 bits (424), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 98/131 (74%)

Query: 1   VGEASLQDLNRRLQKKGAPALPMDRFRPNLVLSGLEAYEEDYLDTLSFGPAGREVVLRLV 60
           VG++SL DLN RL++KGAPA+PMDRFRPN+VL+GL+AYEEDY+D L        V L LV
Sbjct: 74  VGQSSLDDLNARLRRKGAPAVPMDRFRPNVVLTGLDAYEEDYVDYLDVQTGNGGVRLSLV 133

Query: 61  KPCARCPVPGIDQQTGLRDADWPDEPLDTMAVYRANERVGGGLTFGQNAIVVQGWGNLLA 120
           K C RCPVP IDQ+TG  D  WP+EPLDTM+VYR N +  G LTFG+NAIVV G G  L 
Sbjct: 134 KLCTRCPVPTIDQRTGAPDPGWPNEPLDTMSVYRGNAQFDGALTFGKNAIVVNGEGAFLE 193

Query: 121 VGQDVAGELAF 131
           +GQ V  E+AF
Sbjct: 194 IGQSVDAEIAF 204