BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0167.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004681914.1| transcriptional regulator [Cupriavidus necat... 171 6e-41 ref|YP_586780.1| RND efflux system outer membrane lipoprotein [C... 170 1e-40 ref|YP_294462.1| RND efflux system, outer membrane lipoprotein, ... 169 3e-40 ref|YP_841295.1| outer membrane protein [Ralstonia eutropha H16]... 154 7e-36 ref|ZP_02886025.1| RND efflux system, outer membrane lipoprotein... 140 7e-32 >ref|YP_004681914.1| transcriptional regulator [Cupriavidus necator N-1] gb|AEI80682.1| outer membrane protein [Cupriavidus necator N-1] Length = 492 Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 98/165 (59%), Positives = 121/165 (73%), Gaps = 5/165 (3%) Query: 26 HLGVRISIAAEAADAYFRIRSAQARIRIAEDQVQTSDKLLGLVKLRLHDGLSNQREDALA 85 H+GVR+ +AAEAADAYFR+R AQ RI IA+ QV+T+ KLL LV+LRL DG+ +RE A A Sbjct: 190 HMGVRVLVAAEAADAYFRVRGAQQRINIAQQQVRTNAKLLDLVQLRLADGIGAERERAQA 249 Query: 86 QAQLSQVRAGIPPLRAELERQLNRLDVLMGAVPGTYARELDTGAANDIAVPAISVADGSA 145 +AQL+Q R IPPL+ ELE QLNRLDVLMGA PGTYA EL T AVP I+VA G A Sbjct: 250 EAQLAQTRVTIPPLQIELETQLNRLDVLMGAHPGTYAAELLT-PTERTAVPQIAVAQGPA 308 Query: 146 GLLRRRPDVLAAERKLAASNGPRLKLLVAFILXFKKM-LKLLVAF 189 LL+RRPDV+AAER+LAAS+ ++ VA + K+ L L+ F Sbjct: 309 NLLQRRPDVIAAERRLAASSA---RIGVATAEYYPKLSLSALLGF 350 >ref|YP_586780.1| RND efflux system outer membrane lipoprotein [Cupriavidus metallidurans CH34] gb|ABF11511.1| RND efflux system, outer membrane lipoprotein [Cupriavidus metallidurans CH34] Length = 495 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 105/177 (59%), Positives = 130/177 (73%), Gaps = 4/177 (2%) Query: 14 AADAERDAAEADHLGVRISIAAEAADAYFRIRSAQARIRIAEDQVQTSDKLLGLVKLRLH 73 AA+AE AAEA+H+GVRI +AAEAADAYFR+R AQARI IA+ QV+T+ +LL LV+LRL Sbjct: 179 AANAELQAAEANHMGVRILVAAEAADAYFRVRGAQARIAIAQQQVETNQRLLDLVRLRLA 238 Query: 74 DGLSNQREDALAQAQLSQVRAGIPPLRAELERQLNRLDVLMGAVPGTYARELDTGAANDI 133 DG+ +RE A A+AQLSQ R IPPL+ ELE QLNRLDVLMGA PGTYA EL Sbjct: 239 DGIGAEREQAQAEAQLSQTRVTIPPLQIELETQLNRLDVLMGAQPGTYAAELRDSKHETQ 298 Query: 134 AVPAISVADGSAGLLRRRPDVLAAERKLAASNGPRLKLLVAFILXFKKM-LKLLVAF 189 AVP +++A G A LL RRPDV+AAER+LAAS+ ++ VA + K+ L L+ F Sbjct: 299 AVPQVALAQGPANLLERRPDVIAAERRLAASSA---RIGVATAEYYPKVSLSALLGF 352 >ref|YP_294462.1| RND efflux system, outer membrane lipoprotein, NodT [Ralstonia eutropha JMP134] gb|AAZ59618.1| RND efflux system, outer membrane lipoprotein, NodT [Ralstonia eutropha JMP134] Length = 488 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/140 (65%), Positives = 108/140 (77%), Gaps = 1/140 (0%) Query: 26 HLGVRISIAAEAADAYFRIRSAQARIRIAEDQVQTSDKLLGLVKLRLHDGLSNQREDALA 85 HLGVR+ +AAEAADAYFR+R AQ RI IA+ QVQT+ +LL LVKLRL DG+ +RE A A Sbjct: 186 HLGVRVLVAAEAADAYFRVRGAQQRITIAQQQVQTNARLLDLVKLRLADGIGAERERAQA 245 Query: 86 QAQLSQVRAGIPPLRAELERQLNRLDVLMGAVPGTYARELDTGAANDIAVPAISVADGSA 145 +A+L+Q R IPPL+ EL+ QLNRLDVLMGA PGTYA EL T A VP I +A G A Sbjct: 246 EARLAQTRVTIPPLQIELDTQLNRLDVLMGAAPGTYAAELATPGAR-TGVPQIPLAQGPA 304 Query: 146 GLLRRRPDVLAAERKLAASN 165 LL RRPDV+AAER+LAAS+ Sbjct: 305 ALLERRPDVIAAERRLAASS 324 >ref|YP_841295.1| outer membrane protein [Ralstonia eutropha H16] emb|CAJ96565.1| outer membrane protein [Ralstonia eutropha H16] Length = 492 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 98/165 (59%), Positives = 121/165 (73%), Gaps = 5/165 (3%) Query: 26 HLGVRISIAAEAADAYFRIRSAQARIRIAEDQVQTSDKLLGLVKLRLHDGLSNQREDALA 85 H+GVR+ +AAEAADAYFR+R AQ RI IA+ QV+T+ KLL LV+LRL DG+ +RE A A Sbjct: 190 HMGVRVLVAAEAADAYFRVRGAQQRIAIAQQQVRTNAKLLELVQLRLADGIGAERERAQA 249 Query: 86 QAQLSQVRAGIPPLRAELERQLNRLDVLMGAVPGTYARELDTGAANDIAVPAISVADGSA 145 +AQL+Q R IPPL+ ELE QLNRLDVLMGA PGTYA EL T AVP I+VA G A Sbjct: 250 EAQLAQTRVTIPPLQIELETQLNRLDVLMGAHPGTYAAELLT-PTERTAVPQIAVAQGPA 308 Query: 146 GLLRRRPDVLAAERKLAASNGPRLKLLVAFILXFKKM-LKLLVAF 189 LL+RRPDV+AAER+LAAS+ ++ VA + K+ L L+ F Sbjct: 309 NLLQRRPDVIAAERRLAASSA---RIGVATAEYYPKLSLSALLGF 350 >ref|ZP_02886025.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia graminis C4D1M] gb|EDT08413.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia graminis C4D1M] Length = 557 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/152 (51%), Positives = 107/152 (70%), Gaps = 1/152 (0%) Query: 14 AADAERDAAEADHLGVRISIAAEAADAYFRIRSAQARIRIAEDQVQTSDKLLGLVKLRLH 73 AA E AAEA+ LG RI++AA+AADAY ++R Q R+ +A+DQ+ T +LL LV++R Sbjct: 223 AARDEVQAAEAEQLGTRITVAADAADAYLQVRGFQTRLAVAQDQIDTDGRLLELVRVRRR 282 Query: 74 DGLSNQREDALAQAQLSQVRAGIPPLRAELERQLNRLDVLMGAVPGTYARELDTGAANDI 133 G +++RE A A+A L Q R+ +P LR LE QLNRLDVLMGA PGTYA EL ++ Sbjct: 283 AGAADEREIAQAEALLKQARSTVPILRTSLEAQLNRLDVLMGAQPGTYAHELSV-SSTIP 341 Query: 134 AVPAISVADGSAGLLRRRPDVLAAERKLAASN 165 A+P I D +LRRRPD++AAER++AAS+ Sbjct: 342 AIPKIDDNDQPLDVLRRRPDIIAAERRVAASS 373