BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0163.p         (164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004213777.1| hypothetical protein Rahaq_3056 [Rahnella sp...   102   2e-20
ref|YP_003777993.1| hypothetical protein Hsero_4619 [Herbaspiril...   102   2e-20
ref|YP_002442698.1| hypothetical protein PLES_51191 [Pseudomonas...   100   1e-19
ref|NP_253422.1| hypothetical protein PA4734 [Pseudomonas aerugi...   100   1e-19
gb|EGM19935.1| hypothetical protein PA13_11104 [Pseudomonas aeru...    99   1e-19

>ref|YP_004213777.1| hypothetical protein Rahaq_3056 [Rahnella sp. Y9602]
 gb|ADW74650.1| Protein of unknown function DUF2236 [Rahnella sp. Y9602]
          Length = 288

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 65/86 (75%)

Query: 1   VHAAEVWCFLRAYVRYRNPDFSLAMQNRYLDEIALVAEQLGAIDVPRNLKDLESYIDSMR 60
           VH AE + FL++++RYRNP  SL+ QNRY  E + VA+ LGA +VP ++  +E+Y+ +MR
Sbjct: 137 VHVAEAYSFLQSHLRYRNPALSLSDQNRYYQEFSRVAKSLGAANVPESVDAVEAYLQAMR 196

Query: 61  PQLRCEERTLKTVELVLNAPAPAECA 86
           PQLRC+ERTL+ V L+ NAPAP+  A
Sbjct: 197 PQLRCDERTLEVVRLLQNAPAPSRLA 222


>ref|YP_003777993.1| hypothetical protein Hsero_4619 [Herbaspirillum seropedicae SmR1]
 gb|ADJ66085.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 315

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 63/86 (73%)

Query: 1   VHAAEVWCFLRAYVRYRNPDFSLAMQNRYLDEIALVAEQLGAIDVPRNLKDLESYIDSMR 60
           VH AEV CFL+ Y+RYR+P F  A Q++Y DEIA VAE LGA  VPR+   +  YI+ MR
Sbjct: 161 VHVAEVHCFLQGYLRYRHPAFPAARQDQYFDEIAGVAEALGARAVPRSGAAIARYIEDMR 220

Query: 61  PQLRCEERTLKTVELVLNAPAPAECA 86
            QLRC+ERT +T++LVLNAPAP   A
Sbjct: 221 AQLRCDERTRQTLQLVLNAPAPNAVA 246


>ref|YP_002442698.1| hypothetical protein PLES_51191 [Pseudomonas aeruginosa LESB58]
 emb|CAW29873.1| hypothetical protein PLES_51191 [Pseudomonas aeruginosa LESB58]
 dbj|GAA20809.1| hypothetical protein NCGM1179_5678 [Pseudomonas aeruginosa
           NCMG1179]
          Length = 293

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 65/86 (75%)

Query: 1   VHAAEVWCFLRAYVRYRNPDFSLAMQNRYLDEIALVAEQLGAIDVPRNLKDLESYIDSMR 60
           VH AEV  FL++Y+RY NPD   + Q+RY  EIALVAE+LGA  VPR+ + + +Y+++MR
Sbjct: 139 VHVAEVSSFLKSYLRYLNPDLPGSEQDRYYSEIALVAERLGARAVPRDRQQIAAYLEAMR 198

Query: 61  PQLRCEERTLKTVELVLNAPAPAECA 86
           P+LRC+ERT + V ++ NAPAP+  A
Sbjct: 199 PRLRCDERTREVVRILFNAPAPSTLA 224


>ref|NP_253422.1| hypothetical protein PA4734 [Pseudomonas aeruginosa PAO1]
 ref|ZP_04931852.1| hypothetical protein PACG_04681 [Pseudomonas aeruginosa C3719]
 ref|ZP_04937686.1| hypothetical protein PA2G_05218 [Pseudomonas aeruginosa 2192]
 gb|AAG08120.1|AE004887_4 hypothetical protein PA4734 [Pseudomonas aeruginosa PAO1]
 gb|EAZ55971.1| hypothetical protein PACG_04681 [Pseudomonas aeruginosa C3719]
 gb|EAZ61805.1| hypothetical protein PA2G_05218 [Pseudomonas aeruginosa 2192]
 gb|AEO77322.1| hypothetical protein PAM18_4842 [Pseudomonas aeruginosa M18]
          Length = 293

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 65/86 (75%)

Query: 1   VHAAEVWCFLRAYVRYRNPDFSLAMQNRYLDEIALVAEQLGAIDVPRNLKDLESYIDSMR 60
           VH AEV  FL++Y+RY NPD   + Q+RY  EIALVAE+LGA  VPR+ + + +Y+++MR
Sbjct: 139 VHVAEVSSFLKSYLRYLNPDLPGSEQDRYYSEIALVAERLGARAVPRDRQQIAAYLEAMR 198

Query: 61  PQLRCEERTLKTVELVLNAPAPAECA 86
           P+LRC+ERT + V ++ NAPAP+  A
Sbjct: 199 PRLRCDERTREVVRILFNAPAPSTLA 224


>gb|EGM19935.1| hypothetical protein PA13_11104 [Pseudomonas aeruginosa 138244]
          Length = 293

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 65/86 (75%)

Query: 1   VHAAEVWCFLRAYVRYRNPDFSLAMQNRYLDEIALVAEQLGAIDVPRNLKDLESYIDSMR 60
           VH AEV  FL++Y+RY NPD   + Q+RY  EIALVAE+LGA  VPR+ + + +Y+++MR
Sbjct: 139 VHVAEVSSFLKSYLRYLNPDLPGSEQDRYYSEIALVAERLGARAVPRDRQQIAAYLEAMR 198

Query: 61  PQLRCEERTLKTVELVLNAPAPAECA 86
           P+LRC+ERT + V ++ NAPAP+  A
Sbjct: 199 PRLRCDERTREVVRILFNAPAPSTLA 224