BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0160.p (522 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777992.1| cation/multidrug efflux pump protein [Herbas... 701 0.0 ref|YP_004154177.1| acriflavin resistance protein [Variovorax pa... 630 e-178 ref|YP_003748923.1| transport transmembrane protein [Ralstonia s... 567 e-159 ref|YP_001351710.1| AcrB/AcrD/AcrF family multidrug efflux prote... 565 e-159 ref|YP_001862596.1| acriflavin resistance protein [Burkholderia ... 556 e-156 >ref|YP_003777992.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] gb|ADJ66084.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1063 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/400 (84%), Positives = 365/400 (91%), Gaps = 7/400 (1%) Query: 1 VTIENIERHMHMGKPLHDAIIVGAGEIGVPAFVSTVCICIVFVPMFFLSGVARFLFVPLA 60 VTIENIERH+H+GKPLHDAIIVGAGEIGVPAFV+T+CICIVFVPMFFLSGVARFLFVPLA Sbjct: 405 VTIENIERHLHLGKPLHDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLFVPLA 464 Query: 61 EAVVFAMAASYILSRTLVPTLVMLLMGGVHGAEGGNSGGKTSLLQRLYRGFDSRFEHVRR 120 EAVVFAMAASY+LSRTLVPTLVMLLMG + G K SLLQRLYR FD+RFE VR Sbjct: 465 EAVVFAMAASYLLSRTLVPTLVMLLMG----SHGQVDSAKQSLLQRLYRAFDNRFERVRH 520 Query: 121 AYTLVLSSLLSHRRRFALAFLGFCVLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIE 180 YTLVLSSLL+HRRRFALAFLGFC+LSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIE Sbjct: 521 GYTLVLSSLLAHRRRFALAFLGFCLLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIE 580 Query: 181 ETARAADQVEAAIREMIPAHELETILDNIGVPNSGINLSYSNAGTIGTLDGEILMSLHED 240 ETARAAD+VE IR +IPA ELETILDN+GVPNSGINLSYSNAGTIGTLDGEILM+L E Sbjct: 581 ETARAADEVERVIRTLIPASELETILDNLGVPNSGINLSYSNAGTIGTLDGEILMALKEG 640 Query: 241 HRPTEQLVSMLRAELPKRFPGIEFFFQPADIVTQILNFGLPAAIDVQFTGPNLQQNAELA 300 HRPTE LVSMLRAELP+RFPGIEFFFQPADIVTQILNFGLPAAIDVQFTGPN++ NA LA Sbjct: 641 HRPTEALVSMLRAELPRRFPGIEFFFQPADIVTQILNFGLPAAIDVQFTGPNMEANARLA 700 Query: 301 AQLTKQIRQIPGAVDAHVHQRLDGPALDMQMDRTRLQQFGLSAANVGQNVLIALSGSSQT 360 A+LTKQIRQIPGAVDAHVHQRLDGP+LD++MDRTRLQQFGLSA+NVGQN+LIAL+GSSQT Sbjct: 701 AELTKQIRQIPGAVDAHVHQRLDGPSLDLRMDRTRLQQFGLSASNVGQNLLIALAGSSQT 760 Query: 361 TPAFWLNPQNGVVYNIAVQSPQYRTGT---TLSVPALTGA 397 PAFWLNP NGVVYNIAVQSPQY+ + L++P GA Sbjct: 761 QPAFWLNPNNGVVYNIAVQSPQYQVDSLDALLNIPVSPGA 800 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 118/133 (88%), Positives = 124/133 (93%) Query: 383 YRTGTTLSVPALTGAIMTMGVATANSILIVSFARQRREEGATPLAAALESGATRIRPVLM 442 + TGTTLSVPALTGAIMTMGVATANSILIV+FARQRREEGATPLAAALE+G+TRIRPVLM Sbjct: 929 FITGTTLSVPALTGAIMTMGVATANSILIVAFARQRREEGATPLAAALEAGSTRIRPVLM 988 Query: 443 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLIFATVSTLFFVPVVFAGVHQRLARRK 502 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGL+ ATVSTLFFVPVVFAGVHQRLARR Sbjct: 989 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLMLATVSTLFFVPVVFAGVHQRLARRA 1048 Query: 503 EARRQDGRGPADQ 515 + RR GPA Q Sbjct: 1049 DQRRALAGGPAHQ 1061 >ref|YP_004154177.1| acriflavin resistance protein [Variovorax paradoxus EPS] gb|ADU36066.1| acriflavin resistance protein [Variovorax paradoxus EPS] Length = 1071 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 306/399 (76%), Positives = 343/399 (85%), Gaps = 5/399 (1%) Query: 1 VTIENIERHMHMGKPLHDAIIVGAGEIGVPAFVSTVCICIVFVPMFFLSGVARFLFVPLA 60 VTIENIERH+HMG PL +AI VGAGEIG AFVST+CICIVFVPMFFLSGVARFLFVPLA Sbjct: 403 VTIENIERHLHMGTPLREAIEVGAGEIGSAAFVSTLCICIVFVPMFFLSGVARFLFVPLA 462 Query: 61 EAVVFAMAASYILSRTLVPTLVMLLMGGVHGAEGGNSGGKTSLLQRLYRGFDSRFEHVRR 120 EAVVFAM ASY+LSRTLVPTLVMLLMGGVH G K S LQR+Y+ FD RFE VRR Sbjct: 463 EAVVFAMLASYLLSRTLVPTLVMLLMGGVHAQP--VEGKKPSALQRVYQSFDRRFERVRR 520 Query: 121 AYTLVLSSLLSHRRRFALAFLGFCVLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIE 180 AYTL+LS +LS R F FLGFC+LSCLLYP LGRDFFP VD GQIRLH+R PTGTRIE Sbjct: 521 AYTLLLSVVLSKRGGFIGLFLGFCLLSCLLYPVLGRDFFPTVDAGQIRLHVRAPTGTRIE 580 Query: 181 ETARAADQVEAAIREMIPAHELETILDNIGVPNSGINLSYSNAGTIGTLDGEILMSLHED 240 ETAR D+VE AIRE++PA +LETILDN+G+PNSGINLSYSNAGTIGT D E+L+SL + Sbjct: 581 ETARLTDRVEVAIRELVPADQLETILDNLGIPNSGINLSYSNAGTIGTFDAELLLSLKDG 640 Query: 241 HRPTEQLVSMLRAELPKRFPGIEFFFQPADIVTQILNFGLPAAIDVQFTGPNLQQNAELA 300 HRPTE+ V++LRAELPKRFPGIEFFFQPADIVTQILNFGLPAAIDVQF+G ++ NA A Sbjct: 641 HRPTEEFVTLLRAELPKRFPGIEFFFQPADIVTQILNFGLPAAIDVQFSGADIAGNAARA 700 Query: 301 AQLTKQIRQIPGAVDAHVHQRLDGPALDMQMDRTRLQQFGLSAANVGQNVLIALSGSSQT 360 A+LTK I+QIPGAVDAHVHQRLDGP+L++QMDRTRLQQ+GL+AANVGQNVLIALSGSSQT Sbjct: 701 AELTKAIKQIPGAVDAHVHQRLDGPSLNLQMDRTRLQQYGLTAANVGQNVLIALSGSSQT 760 Query: 361 TPAFWLNPQNGVVYNIAVQSPQYRT---GTTLSVPALTG 396 PAFWLNP NGVVY+IAVQ+PQY + L++P TG Sbjct: 761 APAFWLNPVNGVVYSIAVQTPQYNIDSLDSLLNIPVGTG 799 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 112/139 (80%), Positives = 119/139 (85%), Gaps = 3/139 (2%) Query: 383 YRTGTTLSVPALTGAIMTMGVATANSILIVSFARQRREEGATPLAAALESGATRIRPVLM 442 + TGTTLSVPALTGAIMTMGVATANSIL+VSFAR+R + G PL+AALE GATRIRPVLM Sbjct: 931 FITGTTLSVPALTGAIMTMGVATANSILLVSFARERLQAGIPPLSAALEGGATRIRPVLM 990 Query: 443 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLIFATVSTLFFVPVVFAGVHQRLARRK 502 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGL+FATVSTLFFVP VFAGVH RLA RK Sbjct: 991 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLLFATVSTLFFVPAVFAGVHSRLAHRK 1050 Query: 503 EARRQ---DGRGPADQPPQ 518 AR + G PA PQ Sbjct: 1051 AAREEAGHSGHTPAGAAPQ 1069 >ref|YP_003748923.1| transport transmembrane protein [Ralstonia solanacearum CFBP2957] emb|CBJ54555.1| putative transport transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 973 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 309/567 (54%), Positives = 373/567 (65%), Gaps = 59/567 (10%) Query: 1 VTIENIERHMHMGKPLHDAIIVGAGEIGVPAFVSTVCICIVFVPMFFLSGVARFLFVPLA 60 VTIENIERH+H GK AI+ GA EI VPAFVST+CICIVFVPMFFL+GVAR+LFVP+A Sbjct: 405 VTIENIERHLHEGKAPITAILDGAAEIAVPAFVSTLCICIVFVPMFFLTGVARYLFVPMA 464 Query: 61 EAVVFAMAASYILSRTLVPTLVMLLMGGVHGAEGGNSGGKTSLLQRLYRGFDSRFEHVRR 120 EAV+FAM ASY+LSRTLVPTLVM+LM G H + G S +R+Y F++RFEH+R Sbjct: 465 EAVIFAMLASYVLSRTLVPTLVMMLMTG-HTEDAKKPGPGLSTFRRIYLAFNARFEHMRG 523 Query: 121 AYTLVLSSLLSHRRRFALAFLGFCVLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIE 180 Y +L LL RR FA++FLGFCV SC LY LGRDFFP+VD GQIRLHMR P+G RIE Sbjct: 524 NYAAILGGLLERRRAFAMSFLGFCVASCALYLVLGRDFFPDVDAGQIRLHMRAPSGLRIE 583 Query: 181 ETARAADQVEAAIREMIPAHELETILDNIGVPNSGINLSYSNAGTIGTLDGEILMSLHE- 239 ETAR AD+VEAAIR +IP +EL T+LDN+GVPNSGINLSYSNAGTIGTLDGEIL++L E Sbjct: 584 ETARLADEVEAAIRTLIPRNELATLLDNLGVPNSGINLSYSNAGTIGTLDGEILIALREG 643 Query: 240 DHRPTEQLVSMLRAELPKRFPGIEFFFQPADIVTQILNFGLPAAIDVQFTGPNLQQNAEL 299 + +P+ + V LR ELPKRFPG+EF FQPADIV+QILNFGLP+AIDVQF+G ++ N +L Sbjct: 644 ERKPSAEYVRRLREELPKRFPGVEFAFQPADIVSQILNFGLPSAIDVQFSGADVATNQQL 703 Query: 300 AAQLTKQIRQIPGAVDAHVHQRLDGPALDMQMDRTRLQQFGLSAANVGQNVLIALSGSSQ 359 A L +IRQIPGAVD HVHQR D P L + MDRTR+QQ GL +V QN+L++LS S Q Sbjct: 704 AGILANRIRQIPGAVDTHVHQRFDQPTLAVDMDRTRIQQVGLQGRDVAQNLLVSLSSSFQ 763 Query: 360 TTPAFWLNPQNGVVYNIAVQSPQYRTGTTLSV-----------------PALTGAIMTMG 402 T+P FWLNP NGVVY +AVQSPQYR + ++ P L G ++ + Sbjct: 764 TSPTFWLNPVNGVVYQVAVQSPQYRVDSLDALLRTPVAGAGGGATQPGGPQLLGNLVQVR 823 Query: 403 VATA---------NSILIVSFARQRREEGATPLAAALESGATRIRPVL-----MTALAMI 448 A ++ V A Q R+ GA +A ++ IRP L +T + Sbjct: 824 PAVQPQVVSHYDITPVVDVYAAVQGRDLGA--VAKEVQKAVDEIRPRLPRGAQVTVRGQV 881 Query: 449 IGMIPMALGLGEGAEQNA------------------------PLGRAVIGGLIFATVSTL 484 M +GLG G P A I ++F TVSTL Sbjct: 882 RTMESSFVGLGVGLVMAIVLVYLLIVVNFQSWIDPLIIVTALPAALAGIAWMLFVTVSTL 941 Query: 485 FFVPVVFAGVHQRLARRKEARRQDGRG 511 FFVPVVFA VH RL RR R D RG Sbjct: 942 FFVPVVFASVHGRLQRRAGRRGTDLRG 968 >ref|YP_001351710.1| AcrB/AcrD/AcrF family multidrug efflux protein [Janthinobacterium sp. Marseille] gb|ABR89690.1| multidrug efflux pump, AcrB/AcrD/AcrF family [Janthinobacterium sp. Marseille] Length = 1067 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 272/400 (68%), Positives = 319/400 (79%), Gaps = 3/400 (0%) Query: 1 VTIENIERHMHMGKPLHDAIIVGAGEIGVPAFVSTVCICIVFVPMFFLSGVARFLFVPLA 60 VTIENIER++H+G L AI+ GAGEI +P V+T+CICIVFVPMFFL+GVAR+LFVPLA Sbjct: 405 VTIENIERYLHLGHDLETAILEGAGEIAIPTLVATLCICIVFVPMFFLTGVARYLFVPLA 464 Query: 61 EAVVFAMAASYILSRTLVPTLVMLLMGGVHGAEGGNSGGKTSLLQRLYRGFDSRFEHVRR 120 EAV+FAM ASYILSRTLVPTLVML M HGA + GK SLLQR+Y FD+RFE +RR Sbjct: 465 EAVMFAMIASYILSRTLVPTLVMLFMRKSHGAGHTEAKGKPSLLQRVYTSFDARFERMRR 524 Query: 121 AYTLVLSSLLSHRRRFALAFLGFCVLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIE 180 Y LVLS+LL RR +A FLGF VLS LY LG+DFFP+VD G RLH R PTGTRIE Sbjct: 525 GYILVLSALLPRRRFYAAVFLGFTVLSSGLYFTLGQDFFPSVDAGLARLHFRAPTGTRIE 584 Query: 181 ETARAADQVEAAIREMIPAHELETILDNIGVPNSGINLSYSNAGTIGTLDGEILMSLHED 240 ETAR ADQ+EA IRE IPA ELET+LDN+G+P SGINLSYSNAGTIGT DGEI ++L + Sbjct: 585 ETARLADQIEAVIRETIPAEELETVLDNLGLPYSGINLSYSNAGTIGTFDGEIQIALKKG 644 Query: 241 HRPTEQLVSMLRAELPKRFPGIEFFFQPADIVTQILNFGLPAAIDVQFTGPNLQQNAELA 300 H PT+ V LRAELPKRFPGIEF+FQPAD+VTQILNFGLPAAIDVQF G N+++N LA Sbjct: 645 HAPTDDYVKQLRAELPKRFPGIEFYFQPADVVTQILNFGLPAAIDVQFGGSNIKENYRLA 704 Query: 301 AQLTKQIRQIPGAVDAHVHQRLDGPALDMQMDRTRLQQFGLSAANVGQNVLIALSGSSQT 360 AQL ++QIPGAVD ++ QR+D PA+ + MDR+RLQQ GLSAANV QN+LI LSGSSQT Sbjct: 705 AQLQNAVKQIPGAVDVYIRQRIDQPAMQLTMDRSRLQQMGLSAANVAQNLLIPLSGSSQT 764 Query: 361 TPAFWLNPQNGVVYNIAVQSPQYRTGT---TLSVPALTGA 397 PAFWLNP NG+ YNI VQ+PQY+ + + +P TG+ Sbjct: 765 APAFWLNPANGIAYNITVQTPQYKIDSLDALMQIPVGTGS 804 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/204 (55%), Positives = 137/204 (67%), Gaps = 8/204 (3%) Query: 308 RQIPGAVDAHVHQRLDGPALDMQMDRTRLQQ------FGLSAANVGQNVLIALSGSSQTT 361 R++ A++ Q G ++M+ +Q GL A V +LI ++ S Sbjct: 852 REVAKAIEPIRAQLPKGSKINMRGQVETMQSSFVGLGIGLLMAIVLVYLLIVVNFQSWID 911 Query: 362 PAFWLNPQNGVVYNIAVQSPQYRTGTTLSVPALTGAIMTMGVATANSILIVSFARQRREE 421 P + + IA + TGTTLSVPALTGAIMT+GVATANSIL+VSFARQR Sbjct: 912 PLIIITALPAALAGIAWM--LFLTGTTLSVPALTGAIMTVGVATANSILMVSFARQRLLA 969 Query: 422 GATPLAAALESGATRIRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLIFATV 481 G PL+AALE+GATR+RPVLMTALAMIIGM+PMALG GEG EQNAPLGRA IGGL+FAT Sbjct: 970 GEPPLSAALEAGATRLRPVLMTALAMIIGMLPMALGFGEGGEQNAPLGRATIGGLLFATA 1029 Query: 482 STLFFVPVVFAGVHQRLARRKEAR 505 STLFFVP+VFAGVHQ L +R + Sbjct: 1030 STLFFVPLVFAGVHQFLTQRAAKK 1053 >ref|YP_001862596.1| acriflavin resistance protein [Burkholderia phymatum STM815] gb|ACC75550.1| acriflavin resistance protein [Burkholderia phymatum STM815] Length = 1078 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 267/387 (68%), Positives = 311/387 (80%), Gaps = 3/387 (0%) Query: 1 VTIENIERHMHMGKPLHDAIIVGAGEIGVPAFVSTVCICIVFVPMFFLSGVARFLFVPLA 60 VTIENIERH+HMG LHDAI+ GAGEI VPA VST+CICIVFVPMFFL+GVAR+LFVPLA Sbjct: 405 VTIENIERHLHMGTNLHDAILDGAGEIAVPALVSTLCICIVFVPMFFLTGVARYLFVPLA 464 Query: 61 EAVVFAMAASYILSRTLVPTLVMLLMGGVHGAEGGNSGGKTSLLQRLYRGFDSRFEHVRR 120 EAVVFAM ASY+LSRTLVPTL MLLMG H + + + +L RL+R FD+ FE +R Sbjct: 465 EAVVFAMLASYVLSRTLVPTLAMLLMGHAHKHD---ANARPNLFVRLHRRFDASFETMRA 521 Query: 121 AYTLVLSSLLSHRRRFALAFLGFCVLSCLLYPFLGRDFFPNVDGGQIRLHMRMPTGTRIE 180 AY +VLSSLL R+ F FLGFCV+S L LG DFFP VD GQIRLHMR PTGTRIE Sbjct: 522 AYIMVLSSLLVRRKLFGTLFLGFCVVSLALAAVLGEDFFPRVDAGQIRLHMRAPTGTRIE 581 Query: 181 ETARAADQVEAAIREMIPAHELETILDNIGVPNSGINLSYSNAGTIGTLDGEILMSLHED 240 ETAR ADQVE +RE+IP EL T+LDN+G+P SGINLSYSNAGTIGTLDGEI ++L+ED Sbjct: 582 ETARLADQVERVVREVIPRDELVTVLDNLGLPYSGINLSYSNAGTIGTLDGEIQLALNED 641 Query: 241 HRPTEQLVSMLRAELPKRFPGIEFFFQPADIVTQILNFGLPAAIDVQFTGPNLQQNAELA 300 H+P+ + LRA LP+RFPG EFFFQPADIVTQILNFGLPAA+DVQ G N + N E A Sbjct: 642 HKPSLDYIDRLRALLPQRFPGTEFFFQPADIVTQILNFGLPAAVDVQIVGSNQEGNLETA 701 Query: 301 AQLTKQIRQIPGAVDAHVHQRLDGPALDMQMDRTRLQQFGLSAANVGQNVLIALSGSSQT 360 +L KQIR IPGAVD+H+ Q+LD P +++QMDRTRLQQ L+A NV QNVLI+LSGSSQT Sbjct: 702 RKLLKQIRSIPGAVDSHIQQKLDEPVINLQMDRTRLQQLNLNANNVAQNVLISLSGSSQT 761 Query: 361 TPAFWLNPQNGVVYNIAVQSPQYRTGT 387 +P FW NP+NGV YN+AVQ+PQYR + Sbjct: 762 SPGFWFNPRNGVEYNLAVQTPQYRISS 788 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 104/133 (78%), Positives = 115/133 (86%) Query: 383 YRTGTTLSVPALTGAIMTMGVATANSILIVSFARQRREEGATPLAAALESGATRIRPVLM 442 + TGT LSVPALTGAIMTMGVATANSIL+VSFARQR GA PL AALE+GA+RIRPVLM Sbjct: 927 FLTGTHLSVPALTGAIMTMGVATANSILMVSFARQRLTAGAPPLTAALEAGASRIRPVLM 986 Query: 443 TALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLIFATVSTLFFVPVVFAGVHQRLARRK 502 TA AMIIGM+PMALGLGEGAEQNAPLGRAVIGGL+FAT+STLFFVP++FAG+H RLA R Sbjct: 987 TAFAMIIGMVPMALGLGEGAEQNAPLGRAVIGGLLFATLSTLFFVPLLFAGIHSRLAHRN 1046 Query: 503 EARRQDGRGPADQ 515 R+Q G A Q Sbjct: 1047 AGRKQGEHGAAHQ 1059