BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0157.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777991.1| RND family efflux transporter MFP subunit [H... 255 4e-66 ref|YP_004154176.1| RND family efflux transporter mfp subunit [V... 214 6e-54 ref|YP_004231743.1| RND family efflux transporter MFP subunit [B... 181 7e-44 ref|YP_003909346.1| efflux transporter RND family, MFP subunit [... 181 8e-44 ref|ZP_02883927.1| efflux transporter, RND family, MFP subunit [... 179 2e-43 >ref|YP_003777991.1| RND family efflux transporter MFP subunit [Herbaspirillum seropedicae SmR1] gb|ADJ66083.1| efflux transport, RND family, MFP subunit protein [Herbaspirillum seropedicae SmR1] Length = 406 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 120/173 (69%), Positives = 150/173 (86%), Gaps = 2/173 (1%) Query: 46 RALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTTR 105 RALF+LSQTDPLRVY+NVPQSY+NL+K GQ+V VTQ+ELRG+KF+GKVARTA +ID TR Sbjct: 231 RALFVLSQTDPLRVYVNVPQSYANLVKPGQQVTVTQSELRGRKFEGKVARTAGAIDAATR 290 Query: 106 TMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIRL 165 +MQVEV+L N D AL+PGAFVQVALP+KPSGAL+V+ D L+FRRDG +VAAVD N++RL Sbjct: 291 SMQVEVTLSNADHALLPGAFVQVALPIKPSGALLVAADTLMFRRDGTLVAAVDPHNQVRL 350 Query: 166 KRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVAAETAAPKDKDK 218 K+++LGRNFGQ+VEVL+G+ GDE LILNPSD++AEGD+V E PK+ +K Sbjct: 351 KKLRLGRNFGQTVEVLDGLQGDEHLILNPSDALAEGDQVEPTLEQ--PKEPEK 401 >ref|YP_004154176.1| RND family efflux transporter mfp subunit [Variovorax paradoxus EPS] gb|ADU36065.1| efflux transporter, RND family, MFP subunit [Variovorax paradoxus EPS] Length = 417 Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 101/161 (62%), Positives = 131/161 (81%) Query: 46 RALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTTR 105 RALF+L+QTDPLRVYINVPQ+Y+ L+K GQ VVVTQ ELRGQ F G+VART+ +ID TTR Sbjct: 239 RALFMLAQTDPLRVYINVPQAYAQLVKAGQPVVVTQAELRGQTFKGEVARTSGAIDATTR 298 Query: 106 TMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIRL 165 MQVEVSLPN DGAL+PGA+VQV+LPL + + V + LLFR +G +A VDA +I L Sbjct: 299 MMQVEVSLPNRDGALLPGAYVQVSLPLAAARTITVPANALLFRAEGTRIAVVDAQGRIGL 358 Query: 166 KRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSV 206 + V LGRN+G++VEV++G+ ++R++LNPSDS+AEGD V+V Sbjct: 359 RPVTLGRNYGENVEVIDGLGTNDRMVLNPSDSLAEGDVVTV 399 >ref|YP_004231743.1| RND family efflux transporter MFP subunit [Burkholderia sp. CCGE1001] gb|ADX58683.1| efflux transporter, RND family, MFP subunit [Burkholderia sp. CCGE1001] Length = 407 Score = 181 bits (459), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 83/164 (50%), Positives = 121/164 (73%) Query: 45 ARALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTT 104 +RALF L+Q+DPLRVY+ +PQ+Y+ + GQKVVVTQ EL GQ+F G V + +ID T Sbjct: 235 SRALFALAQSDPLRVYVQLPQAYAQNVSVGQKVVVTQAELPGQQFHGTVTHISGAIDVPT 294 Query: 105 RTMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIR 164 R++QVEV+LPNPD L PGA+VQVALP +V + LLFR +G +A VDA ++ Sbjct: 295 RSLQVEVTLPNPDNTLRPGAYVQVALPSIARAQWMVPGNALLFRAEGPRLAVVDAKGDVQ 354 Query: 165 LKRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVAA 208 L+++ + ++ GQ++E+ GI+G++R+I+NPSDS+A+GD V +AA Sbjct: 355 LRKIVIAQDLGQTLEIESGIDGNDRIIINPSDSIADGDHVEIAA 398 >ref|YP_003909346.1| efflux transporter RND family, MFP subunit [Burkholderia sp. CCGE1003] gb|ADN60055.1| efflux transporter, RND family, MFP subunit [Burkholderia sp. CCGE1003] Length = 407 Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 120/163 (73%) Query: 45 ARALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTT 104 +RALF L+Q+DPLRVY+ +PQ+Y+ + GQKVVVTQ EL GQ+F G V + +ID T Sbjct: 235 SRALFALAQSDPLRVYVQLPQAYAQNVSVGQKVVVTQAELPGQQFHGTVTHISGAIDVPT 294 Query: 105 RTMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIR 164 R++QVEV+LPNPD L PGA+VQVALP +V + LLFR +G VA VDA ++ Sbjct: 295 RSLQVEVTLPNPDNTLRPGAYVQVALPSVARAQWMVPGNALLFRAEGPRVAVVDANGNVQ 354 Query: 165 LKRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVA 207 L++V + ++ GQ++E+ GI+G++++I+NPSDS+A+GD V +A Sbjct: 355 LRKVVIAQDLGQTLEIESGIDGNDKVIINPSDSIADGDHVEIA 397 >ref|ZP_02883927.1| efflux transporter, RND family, MFP subunit [Burkholderia graminis C4D1M] gb|EDT10587.1| efflux transporter, RND family, MFP subunit [Burkholderia graminis C4D1M] Length = 407 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 81/163 (49%), Positives = 120/163 (73%) Query: 45 ARALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTT 104 +RALF L+Q+DPLRVY+ +PQ+Y+ + GQKVVVTQ EL GQ+F G V + +ID T Sbjct: 235 SRALFALAQSDPLRVYVQLPQAYAQNVSVGQKVVVTQAELPGQQFHGSVTHISGAIDVPT 294 Query: 105 RTMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIR 164 R++QVEV+LPNPD L PGA+VQVALP +V + LLFR +G +A VDA ++ Sbjct: 295 RSLQVEVTLPNPDNTLRPGAYVQVALPSVARAEWMVPGNALLFRAEGPRLAVVDAKGNVQ 354 Query: 165 LKRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVA 207 L+++ + ++ GQ++E+ GI+G++R+++NPSDS+A+GD V +A Sbjct: 355 LRKIVIAQDLGQTLEIESGIDGNDRVVINPSDSIADGDHVEIA 397