BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0156.p (470 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777990.1| outer membrane drug efflux lipoprotein [Herb... 660 0.0 ref|YP_004154175.1| NodT family RND efflux system outer membrane... 619 e-175 emb|CAQ18276.1| outer membrane drug efflux lipoprotein [Ralstoni... 511 e-142 ref|YP_001862594.1| RND efflux system outer membrane lipoprotein... 510 e-142 emb|CBJ41244.1| Putative outer membrane drug efflux lipoprotein ... 509 e-142 >ref|YP_003777990.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ66082.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/452 (73%), Positives = 388/452 (85%), Gaps = 1/452 (0%) Query: 12 GCAVGPDYRKPDVDMPVTWQLDAPWRQGTPADEQAKGPWWERFGDAKLNALQQQAIDGNQ 71 GCA GPDY +P VDMP W +APWR PAD +GPWWERFGDA+LNALQQQA+ GNQ Sbjct: 18 GCASGPDYTRPQVDMPAAWTSEAPWRSMQPADATPRGPWWERFGDAQLNALQQQALAGNQ 77 Query: 72 TLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLTNYNSPNFATVQNDFA 131 TLAIA ARL QARA NV A PQV ++ R +R RI+ NRPLTNYNSPNF+TVQNDFA Sbjct: 78 TLAIATARLAQARAQLNVTGAAQTPQVNLNARAARSRISANRPLTNYNSPNFSTVQNDFA 137 Query: 132 LGLNVNYEVDLAGRVQRNVXARASSQQSAA-DFENTRLLLSADLAGNYFNLRELDVELDV 190 LG +V+YEVD GRVQR+V A ++ + +A D ENTRLLL+A+LA NYFNLRELDVELDV Sbjct: 138 LGASVSYEVDFFGRVQRSVEAAGAAAEQSAADLENTRLLLTAELATNYFNLRELDVELDV 197 Query: 191 LSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVLRKSRAQYQHAIATL 250 + R+IALQR+ALELAT+RHDLGATSGLD+AQQQALLD+TLTQ+D+L + RAQY+HAIATL Sbjct: 198 VRRAIALQRQALELATARHDLGATSGLDMAQQQALLDSTLTQIDLLGRQRAQYEHAIATL 257 Query: 251 VGTPAPLFSLAPELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAANAQIGVAKAAFYP 310 GTPAP FS+ P L P+TPPA+P+GVPSD+LERRPDIA+AERAMAAANAQIGVA AA+YP Sbjct: 258 TGTPAPAFSITPSLTPITPPAIPVGVPSDVLERRPDIAAAERAMAAANAQIGVASAAYYP 317 Query: 311 SIMLAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVSANVDFAKGGYAASVASY 370 S ML PSYGVDSRN TLFNAPS++WSLGVS +Q++FDGGR+ A VDF++ GY A+VASY Sbjct: 318 SFMLQPSYGVDSRNWATLFNAPSLLWSLGVSASQSLFDGGRLRAGVDFSQAGYEATVASY 377 Query: 371 RRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYEGGVSTYLDVISAQ 430 RR VLTAMQEVEDGITG+AAL+RAY Q+Q AI SARRVL++A+SRYEGG + YLDVI+AQ Sbjct: 378 RRTVLTAMQEVEDGITGLAALERAYAQSQLAIASARRVLEIASSRYEGGATPYLDVITAQ 437 Query: 431 QSLLNSERQAAQLLGQRMLTSVFLIKALGGDW 462 QSLLNSERQAAQL+GQR+L SVFLIKALGGDW Sbjct: 438 QSLLNSERQAAQLMGQRLLVSVFLIKALGGDW 469 >ref|YP_004154175.1| NodT family RND efflux system outer membrane lipoprotein [Variovorax paradoxus EPS] gb|ADU36064.1| RND efflux system, outer membrane lipoprotein, NodT family [Variovorax paradoxus EPS] Length = 470 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 313/449 (69%), Positives = 378/449 (84%), Gaps = 1/449 (0%) Query: 15 VGPDYRKPDVDMPVTWQLDAPWRQGTPADEQAKGPWWERFGDAKLNALQQQAIDGNQTLA 74 VGPDY+ P+ +PV+W+L+APWRQ TP D KG WW+RF DA+L+ALQ +A+ G+ TL Sbjct: 18 VGPDYKAPETPLPVSWKLEAPWRQATPNDVADKGAWWKRFNDAQLDALQDKALAGSPTLV 77 Query: 75 IAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLTNYNSPNFATVQNDFALGL 134 IA ARL QARA+ + +SA +PQ+G+ R SRL+I+ NRPLTNY + N +TVQNDFAL L Sbjct: 78 IANARLAQARANLDASSASRFPQLGLGARASRLKISANRPLTNYATTNASTVQNDFALSL 137 Query: 135 NVNYEVDLAGRVQRNVX-ARASSQQSAADFENTRLLLSADLAGNYFNLRELDVELDVLSR 193 N +YE+DLAGRVQR V A AS++QSAAD NTRL+L+AD+A NYFNLR D+ELDVL+R Sbjct: 138 NASYELDLAGRVQRTVEGATASAEQSAADLANTRLVLTADVANNYFNLRSTDIELDVLAR 197 Query: 194 SIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVLRKSRAQYQHAIATLVGT 253 SI LQR+ALEL T+RHDLGA SGLDVAQQQALL+TTLTQVDVL+K RAQY+HA+ATL GT Sbjct: 198 SIGLQRRALELVTARHDLGAVSGLDVAQQQALLETTLTQVDVLKKQRAQYEHALATLTGT 257 Query: 254 PAPLFSLAPELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAANAQIGVAKAAFYPSIM 313 PAP F+L +L + PPAVPLGVPS++L+RRPD+ASAER+MAAANAQIGVA AAFYPS + Sbjct: 258 PAPSFALPVDLREIRPPAVPLGVPSEILQRRPDVASAERSMAAANAQIGVATAAFYPSFI 317 Query: 314 LAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVSANVDFAKGGYAASVASYRRV 373 ++P+ GVDSR I++LFN PS++WS+GVS Q +FDGGRV ANVDFAK GY A+V +YRR Sbjct: 318 ISPTVGVDSRLIESLFNGPSLLWSVGVSATQVLFDGGRVRANVDFAKAGYDATVGNYRRT 377 Query: 374 VLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYEGGVSTYLDVISAQQSL 433 VL AMQEVEDGITG++ALD A TQAQAA+ +ARRVLD+A SRYEGG STYLDVI+AQQSL Sbjct: 378 VLVAMQEVEDGITGLSALDSATTQAQAAVAAARRVLDMATSRYEGGASTYLDVITAQQSL 437 Query: 434 LNSERQAAQLLGQRMLTSVFLIKALGGDW 462 L ERQAAQL GQR+LTSVFL+KALGGDW Sbjct: 438 LTVERQAAQLQGQRLLTSVFLVKALGGDW 466 >emb|CAQ18276.1| outer membrane drug efflux lipoprotein [Ralstonia solanacearum MolK2] Length = 483 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 251/452 (55%), Positives = 344/452 (76%), Gaps = 1/452 (0%) Query: 12 GCAVGPDYRKPDVDMPVTWQLDAPWRQGTPADEQAKGPWWERFGDAKLNALQQQAIDGNQ 71 GC++ P Y +P +++P WQ +APWR PAD KGPWW+RF D +LN L +QA+ NQ Sbjct: 21 GCSLAPPYERPAMELPAHWQTEAPWRAAQPADAAPKGPWWQRFDDPQLNRLMEQALRENQ 80 Query: 72 TLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLTNYNSPNFATVQNDFA 131 +L +A + L QA+A VA A + PQV +T +RLR + +RPL++Y++P +TVQNDF Sbjct: 81 SLKVAVSNLEQAQALTRVARASLLPQVTAATNDTRLRTSADRPLSSYSTPTVSTVQNDFV 140 Query: 132 LGLNVNYEVDLAGRVQRNVX-ARASSQQSAADFENTRLLLSADLAGNYFNLRELDVELDV 190 + +V+YE DL GRV+ N+ A AS Q+AA+ EN RLLL+A +A +++LRE D E+DV Sbjct: 141 VRADVSYEADLFGRVRSNIANATASETQAAANLENFRLLLAAQVATTWYSLRETDAEIDV 200 Query: 191 LSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVLRKSRAQYQHAIATL 250 + + +ALQRKAL TSRH G SGLD+AQQQAL+DTT TQ ++L+K R QY+HA+ATL Sbjct: 201 VQQGLALQRKALAFVTSRHQDGVASGLDLAQQQALVDTTATQAELLQKQRTQYEHALATL 260 Query: 251 VGTPAPLFSLAPELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAANAQIGVAKAAFYP 310 VGTPAP F LAP + PP +P+ +PSD++ERRPD+A+AER AAANA +GVA+AAF+P Sbjct: 261 VGTPAPAFHLAPVPLAGQPPVIPVALPSDVIERRPDVAAAERGAAAANASVGVARAAFFP 320 Query: 311 SIMLAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVSANVDFAKGGYAASVASY 370 SIML G +SR++ LF+APS++WS G +AQT+FD GR A VDFA GY ++A+Y Sbjct: 321 SIMLGGGAGWESRDLALLFSAPSLLWSFGTQIAQTVFDAGRTRARVDFADAGYRGAIANY 380 Query: 371 RRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYEGGVSTYLDVISAQ 430 R+ VL A+QEVEDG++G+ ALDRA TQA+A++ SAR+V D+A++RYEGG++T LDVI+AQ Sbjct: 381 RQTVLGALQEVEDGLSGLQALDRAATQARASVESARKVYDIASARYEGGLATSLDVITAQ 440 Query: 431 QSLLNSERQAAQLLGQRMLTSVFLIKALGGDW 462 Q+LLN++R A Q+LGQ++ TSVFL+KA+GGDW Sbjct: 441 QALLNNQRTAVQILGQQLTTSVFLVKAVGGDW 472 >ref|YP_001862594.1| RND efflux system outer membrane lipoprotein [Burkholderia phymatum STM815] gb|ACC75548.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia phymatum STM815] Length = 500 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 253/461 (54%), Positives = 333/461 (72%), Gaps = 1/461 (0%) Query: 3 AVAVAATLAGCAVGPDYRKPDVDMPVTWQLDAPWRQGTPADEQAKGPWWERFGDAKLNAL 62 ++AVAA L C VGPDY+ P D P W D+ WR P+ WW+ FGDA L+ L Sbjct: 15 SIAVAAALCACTVGPDYQTPLTDAPPAWHTDSYWRLAQPSHAPLAPDWWKAFGDATLDRL 74 Query: 63 QQQAIDGNQTLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLTNYNSPN 122 + QA+ NQTL A+A QARA+ A + P+V +S +R R++ NRP+TNY PN Sbjct: 75 ETQALAQNQTLVAASAHYAQARATLANTRAQLIPEVDLSASAARERVSKNRPVTNYAVPN 134 Query: 123 FATVQNDFALGLNVNYEVDLAGRVQRNVX-ARASSQQSAADFENTRLLLSADLAGNYFNL 181 +TVQN+ +G +NY+VDL GR++R+V A+AS++QS D N RL+L+ D+A +YF+L Sbjct: 135 QSTVQNNLQIGPTINYDVDLFGRIRRDVEGAQASAEQSRDDLANARLVLTTDVATDYFSL 194 Query: 182 RELDVELDVLSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVLRKSRA 241 RELD E+DVL+RS+ LQ+KAL+ T+ HDLG+ SGLDV QQ++LLD T Q +L RA Sbjct: 195 RELDAEIDVLNRSVQLQQKALDYVTTEHDLGSVSGLDVLQQKSLLDQTRVQAQLLVTQRA 254 Query: 242 QYQHAIATLVGTPAPLFSLAPELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAANAQI 301 Q++HAIA LV PAP FS+ ++V PA+PLG+PSDLL+RRPD+ASAERAMA+ANAQI Sbjct: 255 QFEHAIAALVAVPAPQFSIESQVVEYPVPAIPLGLPSDLLQRRPDVASAERAMASANAQI 314 Query: 302 GVAKAAFYPSIMLAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVSANVDFAKG 361 GVAKAAF+PS+ L P G S L +APS++WSLG +L+Q +FDGGR +ANVDFA Sbjct: 315 GVAKAAFFPSLTLTPGIGWQSTEFANLLSAPSLMWSLGAALSQVVFDGGRRAANVDFANQ 374 Query: 362 GYAASVASYRRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYEGGVS 421 GY A+ A+YR+ VLTA Q+V+DGITG++ LDRA +Q+ A+ A+R+L LAN RY GG+ Sbjct: 375 GYQAAQANYRQAVLTAFQQVQDGITGLSVLDRAASQSHDAVADAQRLLTLANDRYSGGLV 434 Query: 422 TYLDVISAQQSLLNSERQAAQLLGQRMLTSVFLIKALGGDW 462 YLDVI+AQQSLL SERQ Q+ GQ+M TSV L+KALGG W Sbjct: 435 AYLDVITAQQSLLTSERQDVQIHGQQMTTSVALVKALGGGW 475 >emb|CBJ41244.1| Putative outer membrane drug efflux lipoprotein [Ralstonia solanacearum CMR15] Length = 483 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/452 (55%), Positives = 343/452 (75%), Gaps = 1/452 (0%) Query: 12 GCAVGPDYRKPDVDMPVTWQLDAPWRQGTPADEQAKGPWWERFGDAKLNALQQQAIDGNQ 71 GC++ P Y +P +D+P WQ +APWR PAD+ KGPWW+ F D +L+ L QA+ NQ Sbjct: 21 GCSLAPPYERPAMDVPAHWQTEAPWRAAQPADDAPKGPWWQHFNDPQLDRLMAQALRENQ 80 Query: 72 TLAIAAARLTQARASANVASAGMYPQVGVSTRTSRLRIAGNRPLTNYNSPNFATVQNDFA 131 +L +A + L QA+A VA A + PQV ST +RLR + +RPL++Y+SP +TVQND Sbjct: 81 SLKVAVSNLEQAQALTRVARASLLPQVTASTSGARLRTSADRPLSSYSSPTMSTVQNDVV 140 Query: 132 LGLNVNYEVDLAGRVQRNVX-ARASSQQSAADFENTRLLLSADLAGNYFNLRELDVELDV 190 + +V+YE DL GRV+ N+ A A +Q+AA+ EN RLLL+A +A +++LRE D E+DV Sbjct: 141 VRADVSYEADLFGRVRSNIANATAGEEQAAANLENVRLLLAAQVATTWYSLRETDAEIDV 200 Query: 191 LSRSIALQRKALELATSRHDLGATSGLDVAQQQALLDTTLTQVDVLRKSRAQYQHAIATL 250 + + +ALQRKAL+ TSRH G SGLD+AQQQAL+D+T TQ ++L+K R QY+HA+ATL Sbjct: 201 VQQGLALQRKALDFVTSRHQDGVASGLDLAQQQALVDSTATQAELLQKQRTQYEHALATL 260 Query: 251 VGTPAPLFSLAPELVPMTPPAVPLGVPSDLLERRPDIASAERAMAAANAQIGVAKAAFYP 310 VGTPAP F LAP + PP +P+ +PSD++ERRPD+A+AER AAANA +GVA+AAF+P Sbjct: 261 VGTPAPAFHLAPAPLAGQPPVIPVALPSDVIERRPDVAAAERGAAAANASVGVARAAFFP 320 Query: 311 SIMLAPSYGVDSRNIDTLFNAPSVVWSLGVSLAQTIFDGGRVSANVDFAKGGYAASVASY 370 SIML G +SR++ LF+APS++WS G +AQT+FD GR A VDFA GY ++A+Y Sbjct: 321 SIMLNGGAGWESRDLALLFSAPSLLWSFGTQIAQTVFDAGRTRARVDFANAGYQGAIANY 380 Query: 371 RRVVLTAMQEVEDGITGVAALDRAYTQAQAAIVSARRVLDLANSRYEGGVSTYLDVISAQ 430 R+ VL A+QEVEDG++G+ ALDRA TQA+A++ SAR+V D+A++RYEGG++T LDVI+AQ Sbjct: 381 RQTVLGALQEVEDGLSGLQALDRAATQARASVESARKVYDIASARYEGGLATSLDVITAQ 440 Query: 431 QSLLNSERQAAQLLGQRMLTSVFLIKALGGDW 462 QSLLN++R A Q+LGQ++ TSVFL+KA+GGDW Sbjct: 441 QSLLNNQRTAVQILGQQLTTSVFLVKAVGGDW 472