BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0152.p (465 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776656.1| outer membrane multidrug resistance lipoprot... 624 e-176 ref|YP_004752317.1| tripartite multidrug resistance system outer... 590 e-166 ref|YP_003910796.1| RND efflux system, outer membrane lipoprotei... 477 e-132 ref|YP_001684811.1| RND efflux system outer membrane lipoprotein... 414 e-113 ref|NP_519975.1| outer membrane multidrug resistance lipoprotein... 409 e-112 >ref|YP_003776656.1| outer membrane multidrug resistance lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ64748.1| outer membrane multidrug resistance lipoprotein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 332/482 (68%), Positives = 375/482 (77%), Gaps = 34/482 (7%) Query: 16 PQPRLPGLPRLATLSALAVAALTLAGCAQFSDLGPRAEPKDINAYQSSQSLNATNAQAVA 75 PQ PR ++ A +AA +AGCA FSDLG RA+PK I+ YQS QSL A+ QA A Sbjct: 15 PQRSGRAWPRAVSVLAAVLAATLMAGCASFSDLGERAQPKSIDRYQSQQSLAASAVQA-A 73 Query: 76 WPDDNWWTAYGDKQLNTLMAEALRGAPSMAVASARLLKAEGAAQQQGAALLPQVTGNASL 135 WP D WW YGD QLN L+ EAL+ APSMAVA ARL+KAEGAAQQQGAAL PQV+ NASL Sbjct: 74 WPSDQWWRVYGDAQLNALIDEALQSAPSMAVAKARLMKAEGAAQQQGAALYPQVSANASL 133 Query: 136 DRMKQSYNNGVPADFVPRGYNNX---------------------------------DAAQ 162 DRMKQSYNNGVP DFVP+ YNN DAAQ Sbjct: 134 DRMKQSYNNGVPPDFVPKDYNNATRATLDFSYEIDFWGKNRAALAAATSELEASRADAAQ 193 Query: 163 ARITLATSIAAGYAELERLFSQRDTSQAALQVRQETENLFAQRRLNGLETEGSVKQVVAR 222 ARITLATSIA+ YAEL +L++QRDT++AAL+VR E+ +LF QR NGLET GSVKQ+ AR Sbjct: 194 ARITLATSIASAYAELAQLYAQRDTNEAALKVRVESLDLFNQRFTNGLETRGSVKQMEAR 253 Query: 223 RAMAEADLMAVDESIALQRNKLAALAGAGPDRGLQLARPVIDMSKPFNLPQELPANLLGR 282 RA+A+ADL A DESI LQRNKLAAL GAGPDRGLQL RP ID+S+PF LP +LP LLGR Sbjct: 254 RAIAQADLKATDESIGLQRNKLAALLGAGPDRGLQLTRPQIDLSRPFALPAQLPVELLGR 313 Query: 283 RPDIVAARLRAEAAAKQIKVARAQFYPNVNLSAYFGFQSLGTNLLTQSGSSIGSFGPAIS 342 RPDIVAARLRAEAA KQIKVARA FYPNVNL+AYFGFQSLG ++LT++GS IGS GPAIS Sbjct: 314 RPDIVAARLRAEAAGKQIKVARAAFYPNVNLTAYFGFQSLGIDMLTRAGSDIGSIGPAIS 373 Query: 343 LPIFEGGRLRGQFRSASASYDEAVANYDSAVTQALQDVADVAVSERALSGRLNRTEAAAD 402 LPIF GGRLRGQFRSASASYDEAVANYD AVTQALQDVADV VSE+AL+GRL +AAAD Sbjct: 374 LPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALAGRLADVQAAAD 433 Query: 403 AARDAYRIVRNRYEGGLTNYLDVLNAQDTLLTNLRELSTLRSRLFALDVSMVRALGGGYQ 462 AA +AYRIV NRY GGL YLDVLNAQDTL++NLR+LS LRSR+F LDV++VRALGGGY+ Sbjct: 434 AAEEAYRIVSNRYNGGLATYLDVLNAQDTLISNLRQLSDLRSRMFTLDVALVRALGGGYR 493 Query: 463 HA 464 A Sbjct: 494 AA 495 >ref|YP_004752317.1| tripartite multidrug resistance system outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61494.1| Outer membrane component of tripartite multidrug resistance system [Collimonas fungivorans Ter331] Length = 488 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 325/484 (67%), Positives = 372/484 (76%), Gaps = 39/484 (8%) Query: 15 YPQPRLPGLPRLATLSALAVAALTLAGCAQFSDLGPRAEPKDINAYQSSQSLNATNAQAV 74 +P PR P P A LS L V AL+++GCA FS++GPRA PKDI++YQ+ Q AV Sbjct: 10 FPMPR-PCFPPYAALS-LCVLALSISGCAPFSEIGPRAVPKDISSYQAGQ----LAGNAV 63 Query: 75 AWPDDNWWTAYGDKQLNTLMAEALRGAPSMAVASARLLKAEGAAQQQGAALLPQVTGNAS 134 +WPDDNWWT Y D QL+ L+AE L+GAPS+A A ARLLKA+G AQQQGAALLPQV+ NAS Sbjct: 64 SWPDDNWWTIYRDPQLDRLIAEGLKGAPSLAAAQARLLKAQGVAQQQGAALLPQVSANAS 123 Query: 135 LDRMKQSYNNGVPADFVPRGYNNXDAAQARIT---------------------------- 166 D MKQSYNNGVP +FVP YN A ++ Sbjct: 124 ADYMKQSYNNGVPPEFVPPNYNVEGKATLNLSYEIDFWGKNRAALAAATSDLEAARADAA 183 Query: 167 -----LATSIAAGYAELERLFSQRDTSQAALQVRQETENLFAQRRLNGLETEGSVKQVVA 221 LATSIAA YAE ERL SQ DT+Q ALQVR +T +LF QRRLNGLET GSVKQVVA Sbjct: 184 QARIALATSIAAAYAEFERLLSQHDTAQEALQVRIQTLDLFEQRRLNGLETLGSVKQVVA 243 Query: 222 RRAMAEADLMAVDESIALQRNKLAALAGAGPDRGLQLARPVIDMSKPFNLPQELPANLLG 281 R+A AEADL+++DESIALQRNKLAAL GAGPDRGL L RPV+D+SKPF LP +LP NLLG Sbjct: 244 RKASAEADLLSLDESIALQRNKLAALLGAGPDRGLSLQRPVLDLSKPFALPSQLPVNLLG 303 Query: 282 RRPDIVAARLRAEAAAKQIKVARAQFYPNVNLSAYFGFQSLGTNLLTQSGSSIGSFGPAI 341 RRPD+VAARLRAEAAAKQIKVA+AQFYPNVNL+AY GFQSLG +LT++GS IGS GPAI Sbjct: 304 RRPDVVAARLRAEAAAKQIKVAKAQFYPNVNLTAYLGFQSLGLGMLTKAGSDIGSIGPAI 363 Query: 342 SLPIFEGGRLRGQFRSASASYDEAVANYDSAVTQALQDVADVAVSERALSGRLNRTEAAA 401 SLPIFEGGRLRGQ+R ASASYDEAVANYD+AVTQALQDVAD AVSE+ALSGRL + + A Sbjct: 364 SLPIFEGGRLRGQYRQASASYDEAVANYDNAVTQALQDVADAAVSEKALSGRLGKVQEAV 423 Query: 402 DAARDAYRIVRNRYEGGLTNYLDVLNAQDTLLTNLRELSTLRSRLFALDVSMVRALGGGY 461 DAA A +I +NRY GGL YLDVLNAQDTLLTN R+LSTLRSR+FALDV +VRALGGGY Sbjct: 424 DAAAAAAQIAQNRYAGGLATYLDVLNAQDTLLTNQRDLSTLRSRMFALDVQLVRALGGGY 483 Query: 462 QHAS 465 + A+ Sbjct: 484 RQAA 487 >ref|YP_003910796.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. CCGE1003] gb|ADN61505.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. CCGE1003] Length = 496 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 245/471 (52%), Positives = 322/471 (68%), Gaps = 36/471 (7%) Query: 25 RLATLSALAVAALTLAGCAQFSDLGPRAEPKDINAYQSSQSLNATNAQAVAWPDDNWWTA 84 R AT ALAV L A CAQF D+ + PKD+ +Y+++ S + WP + WW Sbjct: 2 RFAT--ALAVTMLASA-CAQFPDMPQKPSPKDVGSYETTHSFSTAAQAQSTWPIEQWWLR 58 Query: 85 YGDKQLNTLMAEALRGAPSMAVASARLLKAEGAAQQQGAALLPQVTGNASLDRMKQSYNN 144 Y D QLN L+AEAL+G P++A A ARL AE +AQQ GA LLP+++ S+++ KQSYNN Sbjct: 59 YNDPQLNALIAEALKGEPTLASAQARLHNAEASAQQAGATLLPEISAQGSVEKEKQSYNN 118 Query: 145 GVPADFVPRGYN---------------------------------NXDAAQARITLATSI 171 G P VP G+ D AQAR+ LA SI Sbjct: 119 GFPPALVPHGWRPYGTAELNFSYEVDFWGKNRASLAAATSELEAARADVAQARMVLAASI 178 Query: 172 AAGYAELERLFSQRDTSQAALQVRQETENLFAQRRLNGLETEGSVKQVVARRAMAEADLM 231 A YA+L R F++RD+++AA++VR ++ LFA+R NGLET+ VKQ +R A ADL Sbjct: 179 ADAYADLARQFAERDSAEAAVKVRTQSAQLFAERFANGLETQAGVKQAESRLQSARADLF 238 Query: 232 AVDESIALQRNKLAALAGAGPDRGLQLARPVIDMSKPFNLPQELPANLLGRRPDIVAARL 291 +DE+IAL RN++AAL G GPDRGL + RP +D+++P +P L LLGRRPD+V ARL Sbjct: 239 ELDEAIALTRNRIAALMGEGPDRGLGIGRPAVDLTQPVAMPAGLALGLLGRRPDVVIARL 298 Query: 292 RAEAAAKQIKVARAQFYPNVNLSAYFGFQSLGTNLLTQSGSSIGSFGPAISLPIFEGGRL 351 RAEAA+K+I VA+A FYPNVNLSA GFQSLG N+LT++GS++G+ GPAI+LPIF GGRL Sbjct: 299 RAEAASKRIDVAKAGFYPNVNLSAMIGFQSLGLNMLTRAGSAVGNVGPAITLPIFNGGRL 358 Query: 352 RGQFRSASASYDEAVANYDSAVTQALQDVADVAVSERALSGRLNRTEAAADAARDAYRIV 411 RGQ R A A+YDEAVANYD +T+AL DVADVAVS+RAL+ RL T+A+ DAA ++R+ Sbjct: 359 RGQLRGARATYDEAVANYDETLTKALHDVADVAVSKRALTDRLQATQASYDAAAQSHRVA 418 Query: 412 RNRYEGGLTNYLDVLNAQDTLLTNLRELSTLRSRLFALDVSMVRALGGGYQ 462 RY+GGL+ YLDVL+A DTL++ R+L+ +RSR F LDVS++RALGGGY+ Sbjct: 419 LERYQGGLSGYLDVLSAADTLVSAQRQLADMRSRTFTLDVSLIRALGGGYE 469 >ref|YP_001684811.1| RND efflux system outer membrane lipoprotein [Caulobacter sp. K31] gb|ABZ72313.1| RND efflux system, outer membrane lipoprotein, NodT family [Caulobacter sp. K31] Length = 502 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 240/470 (51%), Positives = 308/470 (65%), Gaps = 36/470 (7%) Query: 28 TLSALAVAALTLAGCAQFSDLGPRAEPKDINAYQSSQSLNATNAQAVAWPDDNWWTAYGD 87 T+S L +AAL + CA D P K +AY ++QSL AT A AWP D WW AYGD Sbjct: 36 TVSIL-LAALLTSACATMPDATPARVAKAPDAYATAQSL-ATTTDA-AWPVDTWWKAYGD 92 Query: 88 KQLNTLMAEALRGAPSMAVASARLLKAEGAAQQQGAALLPQVTGNASLDRMKQSYNNGVP 147 QL++L+ EAL G+P++A A ARL +A+ A Q AA P V+ + ++R KQSYNNG+P Sbjct: 93 TQLDSLIDEALIGSPTLAQAEARLRRAQALANQAKAAQRPSVSASGGVERSKQSYNNGIP 152 Query: 148 ADFVPRGYNN---------------------------------XDAAQARITLATSIAAG 174 ADFVP+GYN+ DAAQAR+ LATS+AA Sbjct: 153 ADFVPQGYNDYGRLSLDFSWELDFWGKNRAAVAAATSEARAAQADAAQARLMLATSVAAA 212 Query: 175 YAELERLFSQRDTSQAALQVRQETENLFAQRRLNGLETEGSVKQVVARRAMAEADLMAVD 234 YA+L RL+++RD ++ ++ +RQET +L + R NGL+T G ++Q A A A+L A+D Sbjct: 213 YADLARLYAERDVAERSVALRQETLHLVSDRVTNGLDTRGELRQAEAGPPNARAELAAID 272 Query: 235 ESIALQRNKLAALAGAGPDRGLQLARPVIDMSKPFNLPQELPANLLGRRPDIVAARLRAE 294 E IA RN LAAL GAGPDRGL + RP + KPF LP L A+L+GRRPD+VAA+ RAE Sbjct: 273 EQIAQTRNGLAALLGAGPDRGLTIVRPAVASLKPFGLPANLAADLIGRRPDVVAAKWRAE 332 Query: 295 AAAKQIKVARAQFYPNVNLSAYFGFQSLGTNLLTQSGSSIGSFGPAISLPIFEGGRLRGQ 354 A++K+I A+A FYPNVNL+A G QSL + L SGS +GS GPA+SLPIFEGGRL+ Sbjct: 333 ASSKRIGQAKAAFYPNVNLAAAIGVQSLHLDKLFDSGSDVGSVGPAVSLPIFEGGRLKAN 392 Query: 355 FRSASASYDEAVANYDSAVTQALQDVADVAVSERALSGRLNRTEAAADAARDAYRIVRNR 414 R+A A D AVA YDSAVTQAL+DVADVA SERAL RL+ + AA A D YRI + R Sbjct: 393 LRAAEADRDGAVAAYDSAVTQALRDVADVAASERALDKRLSESRAALAANEDGYRIAKLR 452 Query: 415 YEGGLTNYLDVLNAQDTLLTNLRELSTLRSRLFALDVSMVRALGGGYQHA 464 Y+GGL+ Y +VL + LLT R ++ L SR ALDV++VRALGGG+ A Sbjct: 453 YQGGLSTYQNVLIVEQALLTQRRIVADLESRALALDVALVRALGGGFTPA 502 >ref|NP_519975.1| outer membrane multidrug resistance lipoprotein [Ralstonia solanacearum GMI1000] emb|CAD15556.1| putative outer membrane multidrug resistance lipoprotein [Ralstonia solanacearum GMI1000] Length = 475 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/451 (54%), Positives = 298/451 (66%), Gaps = 27/451 (5%) Query: 36 ALTLAGCAQFSDLGPRAEPKDINAYQSSQSLNATNAQAVAWPDDNWWTAYGDKQLNTLMA 95 AL CAQF + R P+ S+ S A AVAWPDD+WW AYGD QLN L+ Sbjct: 24 ALVAGACAQFPEASERPTPQTPEGLHSASS---LAASAVAWPDDHWWQAYGDAQLNALIG 80 Query: 96 EALRGAPSMAVASARLLKAEGAAQQQGAALLPQVTGNASLDRMKQS----YNN------- 144 EALR +P MA A+ARL AE A GAALLPQV+ NAS R +QS +N Sbjct: 81 EALRDSPDMAAAAARLRGAEAAGAVAGAALLPQVSANASAARQRQSGSSDWNEVGRATLD 140 Query: 145 -GVPADFVPRGY------------NNXDAAQARITLATSIAAGYAELERLFSQRDTSQAA 191 DF R + DAAQAR+TLA++IA+ YA+L L++ RD +AA Sbjct: 141 FSWEIDFWGRNRASLAAATSDLEASRADAAQARLTLASAIASSYADLAGLYAVRDADEAA 200 Query: 192 LQVRQETENLFAQRRLNGLETEGSVKQVVARRAMAEADLMAVDESIALQRNKLAALAGAG 251 L VR+ + LF +R +GLET VKQ A A AE +L+ VDESI L R+ LAAL GAG Sbjct: 201 LAVRRHSAQLFTERFASGLETRSGVKQAEALLASAEGELLRVDESIGLTRHALAALVGAG 260 Query: 252 PDRGLQLARPVIDMSKPFNLPQELPANLLGRRPDIVAARLRAEAAAKQIKVARAQFYPNV 311 PDRGL + RP + + P LP EL NLLGRRPD+VAARL+AEA +I RA+FYPNV Sbjct: 261 PDRGLTIRRPSVAIRSPEGLPAELAVNLLGRRPDVVAARLQAEAQVHRIDSKRAEFYPNV 320 Query: 312 NLSAYFGFQSLGTNLLTQSGSSIGSFGPAISLPIFEGGRLRGQFRSASASYDEAVANYDS 371 NLSA+ GF+S+G + L +SGS IGS GPA+SLPIF GGRLRG+ + A ASYDEAVANY+ Sbjct: 321 NLSAFIGFESIGLSNLFKSGSRIGSIGPAVSLPIFNGGRLRGELKRAQASYDEAVANYNR 380 Query: 372 AVTQALQDVADVAVSERALSGRLNRTEAAADAARDAYRIVRNRYEGGLTNYLDVLNAQDT 431 +TQALQDVAD +S +AL+ RL + E A AA AYR+ NRYEGGL +YL+VL AQDT Sbjct: 381 TLTQALQDVADAWLSRKALAPRLAKVEEAFRAAEQAYRVTLNRYEGGLASYLEVLTAQDT 440 Query: 432 LLTNLRELSTLRSRLFALDVSMVRALGGGYQ 462 LLTN R L+ L+SR F LDV+M RALGGGY+ Sbjct: 441 LLTNQRALTDLQSRAFTLDVAMTRALGGGYR 471