BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0151.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752318.1| TetR family transcriptional regulator [Colli... 243 2e-62 ref|YP_003776655.1| transcription regulator protein [Herbaspiril... 231 7e-59 emb|CBJ40435.1| putative transcription regulator protein, TetR f... 186 2e-45 ref|YP_002892243.1| transcriptional regulator, TetR family [Tolu... 185 4e-45 ref|NP_522376.1| transcription regulator protein [Ralstonia sola... 183 2e-44 >ref|YP_004752318.1| TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61495.1| Transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 199 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/202 (59%), Positives = 154/202 (76%), Gaps = 3/202 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MRKKSEERRQAI+DVAA++FNE GF+ SM++ISARLGGSKATLYNYFSSKEEIF++V+ Sbjct: 1 MRKKSEERRQAILDVAAQMFNESGFEGTSMSDISARLGGSKATLYNYFSSKEEIFVEVLL 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 +QAG QF+ FA L+E D D+R L+ F YL L PE+IA RRL+ Y+AERS LG Sbjct: 61 RQAGAQFDLTFASLVESD---DLRAVLQRFGAMYLQAKLQPEIIAARRLILYHAERSQLG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 + YE GPK+G ++EF AM R +READ WL A+QF L+EAEW E R+LGV+T++ Sbjct: 118 QVMYERGPKKGTTRMAEFFASAMARKQIREADAWLAALQFHGLMEAEWIEVRMLGVVTAV 177 Query: 191 PPAKIKASVERSLEAFFRIYGV 212 AK++ SVER+++AF RIY + Sbjct: 178 TAAKVRDSVERAVDAFMRIYAI 199 >ref|YP_003776655.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64747.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 113/200 (56%), Positives = 149/200 (74%), Gaps = 3/200 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MRKKSEERRQA+ID+AAE+FNEIGF+ ASMAEISAR+GGSKATLYNYF+SKEEIF++VM Sbjct: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 +Q G QFE LF L +D D++ L A YL ++ PE++AV+RL Y A +S+LG Sbjct: 61 KQVGCQFEELFMALRNED---DVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 + YE GPKRGW I+EF++ M+ G L DPWL A+Q+R L+EAEW E R+L V+T + Sbjct: 118 PLLYERGPKRGWTRIAEFLQAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDI 177 Query: 191 PPAKIKASVERSLEAFFRIY 210 ++ AS +R++EAF +Y Sbjct: 178 AEDQLDASAQRAVEAFLYLY 197 >emb|CBJ40435.1| putative transcription regulator protein, TetR family [Ralstonia solanacearum CMR15] Length = 202 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 130/202 (64%), Gaps = 3/202 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MRKK+EE+RQ+IID A +F E+GFD+ASM++I+AR G SKATLYNYFSSKEE+F ++M Sbjct: 1 MRKKTEEKRQSIIDAALHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 A + FA L S + DTL +F YL+ IL P ++A+RRL +RS+LG Sbjct: 61 GTAADEIREAFAQL---KSSGPVADTLAVFGEHYLNAILRPSLVAIRRLAICEGDRSNLG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 +YE+GPKRGW +++EF+ AM+ G L++ + + A L EAE E +LGV + Sbjct: 118 RAFYEHGPKRGWAMLAEFLGEAMEAGALKQRNTDIAAAHLHALYEAECVELCLLGVPVDI 177 Query: 191 PPAKIKASVERSLEAFFRIYGV 212 P +I V R+++ F YG Sbjct: 178 SPGRIAEGVARAVDVFMAAYGA 199 >ref|YP_002892243.1| transcriptional regulator, TetR family [Tolumonas auensis DSM 9187] gb|ACQ92657.1| transcriptional regulator, TetR family [Tolumonas auensis DSM 9187] Length = 199 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 93/200 (46%), Positives = 133/200 (66%), Gaps = 3/200 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MR KSE RRQAII+VA + F GF+ SM+EI++R+GGSKATLYNYFSSKEEIF VM+ Sbjct: 1 MRVKSEARRQAIIEVAKDAFIRQGFENTSMSEIASRVGGSKATLYNYFSSKEEIFAAVME 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 A + + F IL + S D+R TL F YLH IL+P+++A+R++ A+RSD+G Sbjct: 61 SSATEKIANAFKIL---EDSDDIRTTLTNFGMHYLHSILAPDIMAIRKMALNEADRSDIG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 +YENGPK+GW +IS ++++ +D+ +L D + A+ + L+EAE E LGVI Sbjct: 118 RHFYENGPKKGWELISNYLQKQIDQHNLSTCDAGICAMHLKALLEAELVEPYALGVIAPP 177 Query: 191 PPAKIKASVERSLEAFFRIY 210 +++ A V R++ F R Y Sbjct: 178 DESQLIAIVSRAITVFLRAY 197 >ref|NP_522376.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD17966.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 207 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 3/201 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MRKK+EE+RQ+IID A +F E+GFD+ASM++I+AR G SKATLYNYFSSKEE+F ++M Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 A + FA L S + DTL +F YL+ IL P +A+RRL +RS+LG Sbjct: 61 GTAADEIREAFAQL---KSSGPVADTLVVFGEHYLNAILRPSTLAIRRLAICEGDRSNLG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 +YE+GPK GW +++EF++ AM+ G L++ D + A L EAE E +LGV + Sbjct: 118 RAFYEHGPKLGWAMLAEFLREAMEAGALKQRDTDIAAAHLHALYEAECVELCLLGVPLDI 177 Query: 191 PPAKIKASVERSLEAFFRIYG 211 P +I V R+++ F YG Sbjct: 178 SPGRIAEGVARAVDVFMAAYG 198