BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0149.p (516 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba... 666 0.0 ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 615 e-174 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 589 e-166 ref|YP_003774566.1| methyl-accepting chemotaxis transducer trans... 584 e-164 ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbasp... 568 e-160 >ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/516 (70%), Positives = 428/516 (82%) Query: 1 MRWFYNLKIAKKLVLSFLAVIILTAGLGAFSIVELIKVNRASSDIATNWMPSVKVGLQLQ 60 M WF NLKIAKKL++SF AVI+LT LG F+I EL VN+AS+D+ATNW+P++K +Q Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 ASMSRFRISELQHILATEEKDYDDAEKAMKTRMEIIRKDLASYEQMISEPEEKVLYPQFQ 120 AS+ R RISELQ + A + +DA KA+K+R++I+ K A+YE ISE EEKVLY +F Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 QTMQKYLAENKKIMELSRANQKDEARLQFKGESNKLFRQAVEQLGGLVKINDDGTVRSNA 180 ++ YL +K++ +S +++EAR FKG+SNK FR +E + ++K+ND G+ RS+ Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 EADHTFNEARNWILGLLIAIVVIAMTLAVWVARIVSVPLNKAVDVAQRVAEGDLGADIRS 240 A+ + A WI+GLL AIVVIA+ LAV VAR VS PLN+AV VA+RVA+GDL DIR+ Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 DSRDETGQLMDSLKAMNDSLLRIVGEVRTGTDTIATASTEIASGNLDLSSRTEQQAGSLE 300 S DETG LM SL+AMNDSL +IVGEVRTGTDTI TAS EIA+GNLDLSSRTE+QAGSLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEELTSTVKANADNARQANQLAVSASEVAQQGGAVVGQVVDTMGSINESSRKIVD 360 ETASAMEELT+TVK NADNARQANQLA SAS++A QGGAVVGQVV TM I ESS +I D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVEKVGSGSKLVEQAGVTMSEVVASVRRVTDIVGEISAASTEQSTGIEEVNRAITQMDEV 480 SVEKVG+GS+LVE+AG TMSEVVASVRRVTD+V EISAAS EQSTGIEE+NRAITQMDEV Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEQAAAAAQSLQEQAGKLAQVVSVFKLRR 516 TQQNAALVE+AAAAAQSLQ+QA +L+QVVSVFKL+R Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQR 516 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 336/514 (65%), Positives = 409/514 (79%) Query: 1 MRWFYNLKIAKKLVLSFLAVIILTAGLGAFSIVELIKVNRASSDIATNWMPSVKVGLQLQ 60 M+WFY+L+I++KL+ +FL V+ + A LG FSI +L +VN AS++I+TNW+PS++ +LQ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 ASMSRFRISELQHILATEEKDYDDAEKAMKTRMEIIRKDLASYEQMISEPEEKVLYPQFQ 120 +MSR R ELQHILA + K+Y++ E+ M+ +M ++ A Y ISEPEEK +YP+ + Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 QTMQKYLAENKKIMELSRANQKDEARLQFKGESNKLFRQAVEQLGGLVKINDDGTVRSNA 180 + + +++E+ KI+ LSR + +EAR +GES K +R +++Q+ L +ND G SN Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 EADHTFNEARNWILGLLIAIVVIAMTLAVWVARIVSVPLNKAVDVAQRVAEGDLGADIRS 240 +AD + +AR WI+ + A + +AM LAVWV+R+++ PL +AV VAQRVA GDL I Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 DSRDETGQLMDSLKAMNDSLLRIVGEVRTGTDTIATASTEIASGNLDLSSRTEQQAGSLE 300 +DETGQL+ +LK+MNDSL+ IVG+VR GT TI TASTEIASGNLDLSSRTE+QA SLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEELTSTVKANADNARQANQLAVSASEVAQQGGAVVGQVVDTMGSINESSRKIVD 360 ETASAMEELTSTVK NADNARQANQLAVSASEVA QGGAVV QVVDTMGSIN SSRKI D Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVEKVGSGSKLVEQAGVTMSEVVASVRRVTDIVGEISAASTEQSTGIEEVNRAITQMDEV 480 SV +V GSKLVE+AG+TMSEVV SVRRVTDIVGEIS+AS EQS GIE+VN AI QMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEQAAAAAQSLQEQAGKLAQVVSVFKL 514 TQQNAALVE+AAAAAQSLQEQA L Q V FKL Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKL 514 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 317/516 (61%), Positives = 408/516 (79%), Gaps = 1/516 (0%) Query: 1 MRWFYNLKIAKKLVLSFLAVIILTAGLGAFSIVELIKVNRASSDIATNWMPSVKVGLQLQ 60 M WFYNLKIA KL+LSF +++LT LG SI +L +VN +++I +NW+PSV++ L L+ Sbjct: 96 MTWFYNLKIATKLLLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLK 155 Query: 61 ASMSRFRISELQHILATEEKDYDDAEKAMKTRMEIIRKDLASYEQMISEPEEKVLYPQFQ 120 ++++ R E+QH+++ + D D + + + ++K L+ Y ++SE EE+ +Y Q + Sbjct: 156 SNLALLRNVEMQHVMSNDAADMDKSAQFIGDIRGDVQKTLSEYAPLVSE-EERAVYDQLK 214 Query: 121 QTMQKYLAENKKIMELSRANQKDEARLQFKGESNKLFRQAVEQLGGLVKINDDGTVRSNA 180 + +YL +KKI+++SRA +KD+A + +G+S + +Q+ LVKIN DG+ S Sbjct: 215 DKIPRYLEMDKKIVDISRAFRKDDAIKEIRGDSLAAIVELDKQVERLVKINSDGSAASAK 274 Query: 181 EADHTFNEARNWILGLLIAIVVIAMTLAVWVARIVSVPLNKAVDVAQRVAEGDLGADIRS 240 + + +N+AR W++GL+IA++++ LA+W+AR+V+ PL AVDVA+RVA GDL ADI Sbjct: 275 DGEAIYNKARFWMIGLMIAMLLLGFALALWIARVVAQPLEFAVDVARRVAGGDLTADIEV 334 Query: 241 DSRDETGQLMDSLKAMNDSLLRIVGEVRTGTDTIATASTEIASGNLDLSSRTEQQAGSLE 300 S DETGQLM +LK MN SL +IVGEVR+GTDTIATAS +IA+GN +LS RTEQQA SLE Sbjct: 335 RSSDETGQLMQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASSLE 394 Query: 301 ETASAMEELTSTVKANADNARQANQLAVSASEVAQQGGAVVGQVVDTMGSINESSRKIVD 360 ETA++ME+LTSTVK NADNA QANQLAVSASEVA GG VV QVV TMG+IN SS+KIVD Sbjct: 395 ETAASMEQLTSTVKQNADNASQANQLAVSASEVALHGGTVVTQVVSTMGAINTSSKKIVD 454 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LIDD Sbjct: 455 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKGLIDD 514 Query: 421 SVEKVGSGSKLVEQAGVTMSEVVASVRRVTDIVGEISAASTEQSTGIEEVNRAITQMDEV 480 SVEKVG G++LV+QAG TM E+VASVRRVTDI+GEI+AAS EQ+ GIE++N+AI+QMD+V Sbjct: 515 SVEKVGLGTRLVDQAGSTMEEIVASVRRVTDIMGEITAASQEQTAGIEQINQAISQMDQV 574 Query: 481 TQQNAALVEQAAAAAQSLQEQAGKLAQVVSVFKLRR 516 TQQNAALVE+AAAAA SLQ+QAG LA VV FKL R Sbjct: 575 TQQNAALVEEAAAAAASLQDQAGALAGVVGAFKLER 610 >ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62658.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 326/514 (63%), Positives = 386/514 (75%) Query: 1 MRWFYNLKIAKKLVLSFLAVIILTAGLGAFSIVELIKVNRASSDIATNWMPSVKVGLQLQ 60 M WFYNL IAKKL LSF VI LT G F+I EL +VN+AS +I + WMP++ +LQ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 ASMSRFRISELQHILATEEKDYDDAEKAMKTRMEIIRKDLASYEQMISEPEEKVLYPQFQ 120 S+ R++EL+ + A ++ A KA+K R++ + + A +EQ +SEP+EK Y QF Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 QTMQKYLAENKKIMELSRANQKDEARLQFKGESNKLFRQAVEQLGGLVKINDDGTVRSNA 180 + + Y+ ++++ E++ Q DE R F G+S KL+R V L +VKIN G+ +++ Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 EADHTFNEARNWILGLLIAIVVIAMTLAVWVARIVSVPLNKAVDVAQRVAEGDLGADIRS 240 EA F A+ WI+GLL A V+IA LA VA VS PL +AV +AQRVA GDL IR Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 DSRDETGQLMDSLKAMNDSLLRIVGEVRTGTDTIATASTEIASGNLDLSSRTEQQAGSLE 300 RDETG LM++L+AMN+SL IV EVR GTDTI TAS EIA GNLDLS+RTEQQAGSLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEELTSTVKANADNARQANQLAVSASEVAQQGGAVVGQVVDTMGSINESSRKIVD 360 ETASAMEELTSTV NADNARQANQLA +AS++A QGG VVGQVV TM I ESSR+I D Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVEKVGSGSKLVEQAGVTMSEVVASVRRVTDIVGEISAASTEQSTGIEEVNRAITQMDEV 480 SV+KV +GS LVE+AG TM+EVVASVRRVTD+V EISAA+ EQS GI EVN AITQMDE Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEQAAAAAQSLQEQAGKLAQVVSVFKL 514 TQQNAALVEQAAAAA SL+ QA LA VV FKL Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 >ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65208.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 306/514 (59%), Positives = 397/514 (77%) Query: 1 MRWFYNLKIAKKLVLSFLAVIILTAGLGAFSIVELIKVNRASSDIATNWMPSVKVGLQLQ 60 M WFYNLKIA KL +FL V++ GLG FS +EL VN++S+DIA NW+PS+ ++ Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 ASMSRFRISELQHILATEEKDYDDAEKAMKTRMEIIRKDLASYEQMISEPEEKVLYPQFQ 120 +++R R ++Q +L ++++ + + +M + K++A Y +++SEP EK LYP+ + Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 QTMQKYLAENKKIMELSRANQKDEARLQFKGESNKLFRQAVEQLGGLVKINDDGTVRSNA 180 + + Y ++++ L +QK A S ++R+ EQ+G L ++N G S+A Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 EADHTFNEARNWILGLLIAIVVIAMTLAVWVARIVSVPLNKAVDVAQRVAEGDLGADIRS 240 +ADH + +A IL L+ VV+AM L+ W+AR+V+ PL AVD+A++VA GDL ADI + Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 DSRDETGQLMDSLKAMNDSLLRIVGEVRTGTDTIATASTEIASGNLDLSSRTEQQAGSLE 300 RDETGQL+++L+ MN +LL IV EVR GTDTI TAS EIA+GN+DLSSRTEQQAG+LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEELTSTVKANADNARQANQLAVSASEVAQQGGAVVGQVVDTMGSINESSRKIVD 360 ETASAMEELTSTV+ N+DNARQANQLAV+ASEVAQ GG VVG+VV TM +IN+SSRKIVD Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVEKVGSGSKLVEQAGVTMSEVVASVRRVTDIVGEISAASTEQSTGIEEVNRAITQMDEV 480 SV KV +GSKLV++AG TM+EVVASV+RV+DIV EI+AA EQ+ GIE++N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEQAAAAAQSLQEQAGKLAQVVSVFKL 514 TQQNAALVEQAAAAA++LQEQAG+L++ VSVF+L Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRL 514