BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0148.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGW62939.1| diguanylate cyclase/phosphodiesterase with PAS/PA... 183 3e-44 ref|YP_004468530.1| sensory box/GGDEF family protein [Alteromona... 168 8e-40 ref|YP_001181634.1| diguanylate cyclase/phosphodiesterase [Shewa... 160 1e-37 ref|ZP_04714031.1| sensory box/GGDEF family protein [Alteromonas... 160 2e-37 ref|YP_965325.1| diguanylate cyclase/phosphodiesterase [Shewanel... 160 2e-37 >gb|EGW62939.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechlorosoma suillum PS] Length = 766 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 101/238 (42%), Positives = 155/238 (65%), Gaps = 2/238 (0%) Query: 6 LLKENALSAAENTVWKESALRIILVSGLLLECGIGLLSAIDAFKVGAYYIIAVVTGFFIA 65 LL E VW++SALRIIL+SG+ LE + S+ A +G Y+I +VTGF++ Sbjct: 10 LLHEPEAPELGEPVWRQSALRIILISGICLEFLVAAHSSWQAIGLGLYHIPVIVTGFYLL 69 Query: 66 LVLGVLASVRRPAIGSAILITTIYAASFCMVYFIKDADVAKYGIMFVYTAPLIGRIFFGS 125 L + A++R +G+ L+ TIYAAS +++F+ ++AK GI+F Y+APL+ R+FFG Sbjct: 70 LAAAIYAALRNVRLGAGFLLLTIYAASLHILFFVDVFEIAKLGIIFAYSAPLVARLFFGM 129 Query: 126 RLALVLMTINVFPFMLLLRNQPL--PVYPGLDAPLANAHAYIQSLLFLFFNICVPLGVFR 183 R A+++M +N F +LLRNQPL P+ P L +HAYIQ+L+FLFFN+CVPL VFR Sbjct: 130 RSAVLMMLLNTLLFAVLLRNQPLLNPLGPQYSITLPESHAYIQTLVFLFFNLCVPLAVFR 189 Query: 184 LLHALDASIRRHRAASSELESSHAQYQEIFENAGGAIVLCDAQGRILKANTLADNLXG 241 L AL+ + ++ L S++ ++++F+++G A+++C G I+KANT A L G Sbjct: 190 ALQALEFRGVQLAVSNQRLSRSNSVFRDMFDHSGMALLICGRGGHIIKANTQAAQLLG 247 >ref|YP_004468530.1| sensory box/GGDEF family protein [Alteromonas sp. SN2] gb|AEF04728.1| sensory box/GGDEF family protein [Alteromonas sp. SN2] Length = 751 Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 146/244 (59%), Gaps = 4/244 (1%) Query: 3 QWLLLKENALSAAENTVWKESALRIILVSGLLLECGIGLLSAIDAFKVGAYYIIAVVTGF 62 ++LLL + A + WK S LRIIL+ G+ L I L S+ A++ G YY++ + GF Sbjct: 11 RYLLLDAEHVRAPDADTWKLSVLRIILLIGVTLTSAIVLHSSYAAYQKGMYYVLYLTIGF 70 Query: 63 FIALVLGVLASVRRPAI--GSAILITTIYAASFCMVYFIKDADVAKYGIMFVYTAPLIGR 120 AL+ L +R+ I SA L TI A C+++F D A+YG++F +T P+I R Sbjct: 71 -SALLYATLG-LRKGQIKLASASLTLTIVLAGLCILFFTIDIASARYGLLFFFTLPIILR 128 Query: 121 IFFGSRLALVLMTINVFPFMLLLRNQPLPVYPGLDAPLANAHAYIQSLLFLFFNICVPLG 180 +F+G++ A++ M +N+ PF +L+ NQP+ G+D L + H Y+ SL+F+FFN C+P+ Sbjct: 129 LFYGNKAAIIGMFLNLIPFAVLINNQPIAPLFGIDITLPDTHTYLSSLIFMFFNFCLPMA 188 Query: 181 VFRLLHALDASIRRHRAASSELESSHAQYQEIFENAGGAIVLCDAQGRILKANTLADNLX 240 V R++ +L++ + + ++E ++YQEIF N G + CD QG+IL+AN A L Sbjct: 189 VIRVMTSLESQSSLNLKQTKKMEKLVSRYQEIFNNGGTPSLFCDQQGKILQANRSARKLI 248 Query: 241 GGRP 244 P Sbjct: 249 NQLP 252 >ref|YP_001181634.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens CN-32] gb|ABP73835.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens CN-32] Length = 754 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 135/250 (54%), Gaps = 12/250 (4%) Query: 1 MFQWL----LLKENALSAAENTVWKESALRIILVSGLLLECGIGLLSAIDAFKVGAYYII 56 MFQWL ++E + + K S LRIIL+SG +L I L S++ A+++ ++I Sbjct: 1 MFQWLKGFLFIREQDFLNPDRELLKTSLLRIILLSGAILTTSIVLHSSLMAYQLNLSFVI 60 Query: 57 AVVTGFFIALVLGVLASVRRPAIGSAILITTIYAASFCMVYFIKDADVAKYGIMFVYTAP 116 + F L+ + + R + S L+ + AA C++ F+ D ++++ GI+F+YT P Sbjct: 61 IITVSFLSVLISALWFTRRYLMLSSISLLAMVVAACICILLFVPDFNLSQAGIIFLYTLP 120 Query: 117 LIGRIFFGSRLALVLMTINVFPFMLLLRNQPLPVYPGLDAPLANAHAYIQSLLFLFFNIC 176 L+ FG++ A+++M NV PF+LLL+N+ LP +D + HAY+ LLF FFNIC Sbjct: 121 LMALFLFGAKAAIIMMFFNVLPFLLLLQNRNLPTIIDIDISMPATHAYLNGLLFTFFNIC 180 Query: 177 VPLGVFRLLHAL----DASIRRHRAASSELESSHAQYQEIFENAGGAIVLCDAQGRILKA 232 +PL RLL I+ H A LE QY EIFEN G A C+ G IL Sbjct: 181 IPLSAMRLLKTQKIHSQQMIKHHEALQHTLE----QYTEIFENNGTASFFCNEDGLILNL 236 Query: 233 NTLADNLXGG 242 N A N+ Sbjct: 237 NDAAKNIAND 246 >ref|ZP_04714031.1| sensory box/GGDEF family protein [Alteromonas macleodii ATCC 27126] Length = 745 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 136/245 (55%), Gaps = 1/245 (0%) Query: 3 QWLLLKENALSAAENTVWKESALRIILVSGLLLECGIGLLSAIDAFKVGAYYIIAVVTGF 62 +LL+ E+ L + VW+ S LR IL+ G++L I S+ A+ YY++ + GF Sbjct: 11 HYLLVDEDNLRTTDADVWRLSVLRTILLIGVVLTSAIVAHSSYTAYVQELYYVMYLTLGF 70 Query: 63 FIALVLGVLASVRRPAIGSAILITTIYAASFCMVYFIKDADVAKYGIMFVYTAPLIGRIF 122 L + ++ I SA L+ + AS C+++F D + A+YG++ ++T P+I R+ Sbjct: 71 TAFLFATLSIGLKHIKIASACLVLAVVGASLCILFFTIDLESARYGLLLLFTLPIIVRVL 130 Query: 123 FGSRLALVLMTINVFPFMLLLRNQPLPVYPGLDAPLANAHAYIQSLLFLFFNICVPLGVF 182 +G + ++ M N+ P+ LLL N + G+D L + H Y+ SL+FLFFN C+P+ V Sbjct: 131 YGVKASIATMLFNLIPYYLLLNNTQVSPLFGIDITLPDTHTYLASLIFLFFNFCIPMAVL 190 Query: 183 RLLHALDASIRRHRAASSELESSHAQYQEIFENAGGAIVLCDAQGRILKANTLADNLXGG 242 R++ +L+ + S +L ++YQEIF N G CD QGRI++AN A L Sbjct: 191 RVMSSLEKQSEHNLLQSKKLNKLVSRYQEIFNNGGTPSFFCDEQGRIIQANKAARALVKK 250 Query: 243 -RPPS 246 RP S Sbjct: 251 YRPES 255 >ref|YP_965325.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1] gb|ABM26771.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1] gb|ADV56502.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens 200] Length = 754 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 135/250 (54%), Gaps = 12/250 (4%) Query: 1 MFQWL----LLKENALSAAENTVWKESALRIILVSGLLLECGIGLLSAIDAFKVGAYYII 56 MFQWL ++E + + K S LRIIL+SG +L I L S++ A+++ ++I Sbjct: 1 MFQWLKGFLFIREQDFLNPDRELLKTSLLRIILLSGAILTTSIVLHSSLMAYQLNLSFVI 60 Query: 57 AVVTGFFIALVLGVLASVRRPAIGSAILITTIYAASFCMVYFIKDADVAKYGIMFVYTAP 116 + F L+ + + R + S L+ + AA C++ F+ D ++++ GI+F+YT P Sbjct: 61 IITVSFLSVLISALWFTRRYLMLSSISLLAMVVAACICILLFVPDFNLSQAGIIFLYTLP 120 Query: 117 LIGRIFFGSRLALVLMTINVFPFMLLLRNQPLPVYPGLDAPLANAHAYIQSLLFLFFNIC 176 L+ FG++ A+++M NV PF+LLL+N+ LP +D + HAY+ LLF FFNIC Sbjct: 121 LMALFLFGAKAAIIMMFFNVLPFLLLLQNRNLPTIIDIDISMPATHAYLNGLLFTFFNIC 180 Query: 177 VPLGVFRLLHAL----DASIRRHRAASSELESSHAQYQEIFENAGGAIVLCDAQGRILKA 232 +PL RLL I+ H A LE QY EIFEN G A C+ G IL Sbjct: 181 IPLSAMRLLKTQKIHSQQMIKHHEALQHTLE----QYTEIFENNGTASFFCNEDGLILNL 236 Query: 233 NTLADNLXGG 242 N A N+ Sbjct: 237 NDAAKNIAND 246