BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0144.p         (205 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773668.1| prolidase [Herbaspirillum seropedicae SmR1] ...   289   2e-76
ref|YP_295113.1| amidohydrolase [Ralstonia eutropha JMP134] >gi|...   253   1e-65
ref|YP_841024.1| M38 familypeptidase [Ralstonia eutropha H16] >g...   249   2e-64
ref|YP_001777423.1| amidohydrolase [Burkholderia cenocepacia MC0...   245   2e-63
ref|YP_004681702.1| peptidase M38 family [Cupriavidus necator N-...   245   3e-63

>ref|YP_003773668.1| prolidase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61760.1| prolidase protein [Herbaspirillum seropedicae SmR1]
          Length = 409

 Score =  289 bits (739), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/163 (88%), Positives = 150/163 (92%), Gaps = 3/163 (1%)

Query: 1   MTKILLQGGNVLDPAHGSLLLRHDVLIENDRIVDVSATPIDAPNASDMQRIDVTGKTVMP 60
           MTKILL+GGNVLDPA GSL  RHDVLI+ DRIVDVSATP++   A   + IDV GKTVMP
Sbjct: 1   MTKILLKGGNVLDPALGSLFPRHDVLIDKDRIVDVSATPLEVSGA---RVIDVAGKTVMP 57

Query: 61  GLIDCHVHVLASLANLGANALQPGSLTSIRALPIVEAMLNRGFTTVRDAGGADWGLAQAI 120
           GLIDCHVHVLASLANLG NALQPGSLTSIRALPIVEAMLNRGFT+VRDAGGADWGLAQAI
Sbjct: 58  GLIDCHVHVLASLANLGLNALQPGSLTSIRALPIVEAMLNRGFTSVRDAGGADWGLAQAI 117

Query: 121 AIGLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 163
           AIGLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG
Sbjct: 118 AIGLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 160


>ref|YP_295113.1| amidohydrolase [Ralstonia eutropha JMP134]
 gb|AAZ60269.1| Amidohydrolase [Ralstonia eutropha JMP134]
          Length = 412

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/161 (78%), Positives = 137/161 (85%), Gaps = 4/161 (2%)

Query: 3   KILLQGGNVLDPAHGSLLLRHDVLIENDRIVDVSATPIDAPNASDMQRIDVTGKTVMPGL 62
           +IL  GG+VLDP  G LL  HDVL+E +RIV V    IDAPNA   QRID  GKTVMPGL
Sbjct: 6   QILFHGGDVLDPGMGELLRGHDVLVEGERIVAVGPA-IDAPNA---QRIDARGKTVMPGL 61

Query: 63  IDCHVHVLASLANLGANALQPGSLTSIRALPIVEAMLNRGFTTVRDAGGADWGLAQAIAI 122
           IDCHVHVLASLANLG NA+QP  L +IRALPI++ ML+RGFTTVRDAGGADWGL+QA+A 
Sbjct: 62  IDCHVHVLASLANLGLNAVQPNVLVAIRALPIMKGMLDRGFTTVRDAGGADWGLSQAVAT 121

Query: 123 GLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 163
           GLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG
Sbjct: 122 GLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 162


>ref|YP_841024.1| M38 familypeptidase [Ralstonia eutropha H16]
 emb|CAJ96294.1| putative peptidase, M38 family [Ralstonia eutropha H16]
          Length = 412

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 135/161 (83%), Gaps = 4/161 (2%)

Query: 3   KILLQGGNVLDPAHGSLLLRHDVLIENDRIVDVSATPIDAPNASDMQRIDVTGKTVMPGL 62
           +IL  GG+VL+PA G LL  HDVL+E +RI  V    IDAPNA   QRID  GKTVMPGL
Sbjct: 6   QILFHGGDVLEPATGELLRGHDVLVEGERIAAVGPA-IDAPNA---QRIDARGKTVMPGL 61

Query: 63  IDCHVHVLASLANLGANALQPGSLTSIRALPIVEAMLNRGFTTVRDAGGADWGLAQAIAI 122
           IDCHVHVLASLANLG NA+QP  L +IRALPI++ ML RGFTTVRDAGGADWGL+QA+A 
Sbjct: 62  IDCHVHVLASLANLGLNAVQPNVLVAIRALPIMQRMLERGFTTVRDAGGADWGLSQAVAT 121

Query: 123 GLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 163
           GLVPGPRIF SGKALSQTGGHGDFRPRSDVLEPCSCAFRAG
Sbjct: 122 GLVPGPRIFASGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 162


>ref|YP_001777423.1| amidohydrolase [Burkholderia cenocepacia MC0-3]
 gb|ACA92933.1| amidohydrolase [Burkholderia cenocepacia MC0-3]
          Length = 413

 Score =  245 bits (626), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/163 (73%), Positives = 133/163 (81%), Gaps = 3/163 (1%)

Query: 1   MTKILLQGGNVLDPAHGSLLLRHDVLIENDRIVDVSATPIDAPNASDMQRIDVTGKTVMP 60
           MT  +LQGGNVLD   G LL  HDV+IE +RIV+V+  P+D PNA   Q IDV GKTVMP
Sbjct: 1   MTITVLQGGNVLDLERGVLLEHHDVVIEGERIVEVTDRPVDLPNA---QVIDVRGKTVMP 57

Query: 61  GLIDCHVHVLASLANLGANALQPGSLTSIRALPIVEAMLNRGFTTVRDAGGADWGLAQAI 120
           G IDCHVHVLAS ANLGANA QP  L +IR+LPI++AML+RGFT+VRDAGGADW L QA+
Sbjct: 58  GFIDCHVHVLASNANLGANATQPNILAAIRSLPILDAMLSRGFTSVRDAGGADWSLMQAV 117

Query: 121 AIGLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 163
             GL+PGPRIFPSGKALSQTGGHGDFRPR DVLEPCSC FR G
Sbjct: 118 ETGLIPGPRIFPSGKALSQTGGHGDFRPRGDVLEPCSCCFRTG 160


>ref|YP_004681702.1| peptidase M38 family [Cupriavidus necator N-1]
 gb|AEI80470.1| peptidase M38 family [Cupriavidus necator N-1]
          Length = 412

 Score =  245 bits (625), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/161 (75%), Positives = 134/161 (83%), Gaps = 4/161 (2%)

Query: 3   KILLQGGNVLDPAHGSLLLRHDVLIENDRIVDVSATPIDAPNASDMQRIDVTGKTVMPGL 62
           +IL  GG+VL+P  G LL  HDVL+E +RI  V    IDAP+A   QRID  GKTVMPGL
Sbjct: 6   QILFHGGDVLEPGTGELLRCHDVLVEGERIAAVGPA-IDAPSA---QRIDARGKTVMPGL 61

Query: 63  IDCHVHVLASLANLGANALQPGSLTSIRALPIVEAMLNRGFTTVRDAGGADWGLAQAIAI 122
           IDCHVHVLASLANLG NA+QP  L +IRALPI++ ML RGFTTVRDAGGADWGL+QA+A 
Sbjct: 62  IDCHVHVLASLANLGLNAVQPNVLVAIRALPIMQRMLERGFTTVRDAGGADWGLSQAVAT 121

Query: 123 GLVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 163
           GLVPGPRIF SGKALSQTGGHGDFRPRSDVLEPCSCAFRAG
Sbjct: 122 GLVPGPRIFASGKALSQTGGHGDFRPRSDVLEPCSCAFRAG 162