BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0141.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773669.1| transcription regulator protein [Herbaspiril...   191   3e-47
ref|YP_841025.1| LysR family transcriptional regulator [Ralstoni...   173   7e-42
ref|YP_004681703.1| LysR family transcriptional regulator [Cupri...   169   1e-40
ref|YP_295114.1| LysR family transcriptional regulator [Ralstoni...   161   3e-38
ref|YP_558001.1| LysR family transcriptional regulator [Burkhold...   123   1e-26

>ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ61761.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 301

 Score =  191 bits (485), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 95/102 (93%)

Query: 3   EDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACMRE 62
           EDGQRQWMSWQNWMA N + + RIEHQILSNQYP+LLQLAMEG G+VLAWRHMIDACM +
Sbjct: 195 EDGQRQWMSWQNWMAHNGMPDVRIEHQILSNQYPVLLQLAMEGQGVVLAWRHMIDACMEQ 254

Query: 63  GLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEES 104
           GLLVRAC+ASASLGGGYYAVWPRDRIEHAAAR+FR+WLV ES
Sbjct: 255 GLLVRACQASASLGGGYYAVWPRDRIEHAAARAFRSWLVAES 296


>ref|YP_841025.1| LysR family transcriptional regulator [Ralstonia eutropha H16]
 emb|CAJ96295.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16]
          Length = 310

 Score =  173 bits (439), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 92/109 (84%)

Query: 1   MQEDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACM 60
           M +DGQRQWMSWQ W+A   L +A + + + SNQYPILLQLAMEGHGIVL WRHMIDAC+
Sbjct: 202 MLDDGQRQWMSWQTWLANQGLPDATLRNVLTSNQYPILLQLAMEGHGIVLGWRHMIDACL 261

Query: 61  REGLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEESAVAVA 109
           REGLLVRA EASASLGGGYYAVWPRDR+E AAAR+FR+WLV ++  A A
Sbjct: 262 REGLLVRASEASASLGGGYYAVWPRDRMEPAAARAFRSWLVRQATPAPA 310


>ref|YP_004681703.1| LysR family transcriptional regulator [Cupriavidus necator N-1]
 gb|AEI80471.1| transcriptional regulator LysR family [Cupriavidus necator N-1]
          Length = 301

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 91/109 (83%)

Query: 1   MQEDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACM 60
           M +DGQRQWMSWQ W+A   L +A + + + SNQYPILLQLAMEG GIVL WRHMIDAC+
Sbjct: 193 MLDDGQRQWMSWQTWLASQGLPDATLRNVLTSNQYPILLQLAMEGQGIVLGWRHMIDACL 252

Query: 61  REGLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEESAVAVA 109
           REGLLVRA +ASASLGGGYYAVWPRDR+E AAAR+FR+WLV ++  A A
Sbjct: 253 REGLLVRASDASASLGGGYYAVWPRDRMEPAAARAFRSWLVRQATPAPA 301


>ref|YP_295114.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134]
 gb|AAZ60270.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134]
          Length = 299

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 86/107 (80%)

Query: 1   MQEDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACM 60
           M +DGQRQWMSWQ W A   + +A     + SNQYPILLQLA+EG GI L WRHMID C+
Sbjct: 193 MLDDGQRQWMSWQAWFAHQGVHDANPRAFLTSNQYPILLQLAIEGQGIALGWRHMIDGCL 252

Query: 61  REGLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEESAVA 107
           R+GLLVRACEASASLGGGYY VWPRDR+E AAAR+FRNW+V +++ A
Sbjct: 253 RDGLLVRACEASASLGGGYYVVWPRDRMEPAAARAFRNWMVRQASTA 299


>ref|YP_558001.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gb|ABE29949.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 305

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 72/104 (69%)

Query: 1   MQEDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACM 60
           +QEDGQRQWMSW  W   N +        ++ N YP L+Q+A+ G G+VL WRHMIDAC+
Sbjct: 193 VQEDGQRQWMSWSEWFRLNHVQMPASPQAVVVNHYPQLVQMAILGQGVVLGWRHMIDACL 252

Query: 61  REGLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEES 104
            EGLLVRA +ASAS GGGYY V P DR ++ AAR F  W+ E++
Sbjct: 253 SEGLLVRATQASASHGGGYYVVSPNDRSQNQAARLFTRWVFEQA 296