BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0133.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773687.1| transcription regulator protein [Herbaspiril...   205   2e-51
ref|YP_004751191.1| TetR family regulatory protein [Collimonas f...   190   6e-47
ref|ZP_08274336.1| putative transcriptional regulator for fatty ...   181   5e-44
ref|YP_001019617.1| TetR family regulatory protein [Methylibium ...   149   1e-34
ref|YP_001793052.1| TetR family transcriptional regulator [Lepto...   144   5e-33

>ref|YP_003773687.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ61779.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  205 bits (522), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/136 (73%), Positives = 113/136 (83%), Gaps = 4/136 (2%)

Query: 1   MFARWVKLVSVEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRDALHRCINQSMEMGH 60
           MFARWVK V+VEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRDAL RCI Q+++ GH
Sbjct: 102 MFARWVKQVTVEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRDALERCIQQAIDAGH 161

Query: 61  LRSDINVEQMVYEIYGLILALHHDARFLKIPGSVERAQAGFDRLIDSYRNPQVPQISASA 120
           LR +++V QMVYE+YGLILALHHDARFL IPGSVERA+A F RLI SYR    PQ S S 
Sbjct: 162 LRPEVDVSQMVYEMYGLILALHHDARFLHIPGSVERAEASFRRLIGSYR----PQGSDSL 217

Query: 121 KTANSKTTKPPAKKAA 136
            +  +K +K  A+KAA
Sbjct: 218 SSTPAKHSKSAARKAA 233


>ref|YP_004751191.1| TetR family regulatory protein [Collimonas fungivorans Ter331]
 gb|AEK60368.1| TetR family regulatory protein [Collimonas fungivorans Ter331]
          Length = 233

 Score =  190 bits (483), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 104/136 (76%), Gaps = 1/136 (0%)

Query: 1   MFARWVKLVSVEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRDALHRCINQSMEMGH 60
           MFARW++ V++EIA GCIYISGAVEYDDRPG IR+ LV MVQ W+ ALHRC  Q++E GH
Sbjct: 96  MFARWIRQVTIEIASGCIYISGAVEYDDRPGEIREQLVTMVQTWQQALHRCALQAIEAGH 155

Query: 61  LRSDINVEQMVYEIYGLILALHHDARFLKIPGSVERAQAGFDRLIDSYRNPQV-PQISAS 119
           LR D + +Q+VYE+YGLIL LHHDARFLK  GSVERAQ GFDRLIDSYR+ QV  Q +  
Sbjct: 156 LRGDTDADQLVYEMYGLILGLHHDARFLKKAGSVERAQKGFDRLIDSYRDTQVDTQATKK 215

Query: 120 AKTANSKTTKPPAKKA 135
           +   N K    PA ++
Sbjct: 216 SSQTNQKIAAKPAARS 231


>ref|ZP_08274336.1| putative transcriptional regulator for fatty acid degradation FadP,
           TetR family [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32197.1| putative transcriptional regulator for fatty acid degradation FadP,
           TetR family [Oxalobacteraceae bacterium IMCC9480]
          Length = 212

 Score =  181 bits (458), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 102/127 (80%)

Query: 1   MFARWVKLVSVEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRDALHRCINQSMEMGH 60
           MFARWVK V+VEIA GCIYISGAVEYDDRPGAIR+ L AMV AW+ AL RC+ Q+  MGH
Sbjct: 86  MFARWVKRVTVEIASGCIYISGAVEYDDRPGAIREELEAMVLAWQTALFRCVEQATAMGH 145

Query: 61  LRSDINVEQMVYEIYGLILALHHDARFLKIPGSVERAQAGFDRLIDSYRNPQVPQISASA 120
           LR+D + +QMV+E+YGLILALHHDARF+K PGSVERAQ GF+RL+ SY+N   P   A+ 
Sbjct: 146 LRADTDPQQMVFEMYGLILALHHDARFIKRPGSVERAQLGFERLMQSYQNVAPPAPGANE 205

Query: 121 KTANSKT 127
           K+  + T
Sbjct: 206 KSNPAVT 212


>ref|YP_001019617.1| TetR family regulatory protein [Methylibium petroleiphilum PM1]
 gb|ABM93382.1| TetR family regulatory protein [Methylibium petroleiphilum PM1]
          Length = 226

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 88/118 (74%)

Query: 1   MFARWVKLVSVEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRDALHRCINQSMEMGH 60
           +F RWVK VSVE+  GCIYISGAVE+DDRPG +RD LVAMV+ W  AL R I  +++ GH
Sbjct: 108 LFQRWVKRVSVEVDSGCIYISGAVEFDDRPGPVRDALVAMVRTWHQALQRAIRLAIDAGH 167

Query: 61  LRSDINVEQMVYEIYGLILALHHDARFLKIPGSVERAQAGFDRLIDSYRNPQVPQISA 118
           LR D +  Q+++EI+GLILALHHDARF++ PG+VERA  GF+R++  +     P + A
Sbjct: 168 LRPDTDPAQLLFEIHGLILALHHDARFMRNPGAVERAGRGFERILADHLTATAPPMPA 225


>ref|YP_001793052.1| TetR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gb|ACB36287.1| transcriptional regulator, TetR family [Leptothrix cholodnii SP-6]
          Length = 219

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 82/108 (75%)

Query: 1   MFARWVKLVSVEIALGCIYISGAVEYDDRPGAIRDHLVAMVQAWRDALHRCINQSMEMGH 60
           MF RW++ V+VEI  GCIYISGAVE+DDRPG +RD L  MV+ W  ALHR I  + E+G 
Sbjct: 103 MFDRWIRRVTVEIDSGCIYISGAVEFDDRPGPVRDALADMVRTWHAALHRAIEIAREVGD 162

Query: 61  LRSDINVEQMVYEIYGLILALHHDARFLKIPGSVERAQAGFDRLIDSY 108
           LR D +  QM +E++GLILALHHDARFL+ PG+VERA+ GF+ ++  Y
Sbjct: 163 LRPDTDARQMAFEMHGLILALHHDARFLREPGAVERARRGFEHMLARY 210